Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00228 ATGCAGGGCATACACTCGATTGCTGGCGGAAACCGCTTGTTTGGCGGCGGAGGAGGTGGCGGCGGGGACCGTAGCCTGAGGCCCCACCTCCACCACCACCAGAACCACCAAGCCTTGAAGTGCCCAAGGTGTGATTCTCTCAATACAAAGTTCTGTTATTACAATAACTATAATCTCTCTCAGCCTCGTCACTTCTGCAAGAGCTGCCGCCGTTACTGGACCAAAGGCGGCGTCCTACGCAACGTTCCTGTCGGTGGTGGCTGTCGGAAAACCAAACGAGCTTCCAAGTCCAAGCCGACATCTGACACAACCGGGCCTCCACCTCCACTTCACGAACAGAAATCCACCTCTCATTCTAGCAGTGAGAGCTCTAGCCTCACCGCCGCAACAACAACCGCCGCCGCGGCAACCGAGGCTGTTTCCGCTCCGTCTACGAGTTCCGCGTCGACTCTATTAAGCGTACAGGATTCGAAATTGTTCCCCACTCCAAGCACAAACACGAATTTCGAGATGGCGGCAGCTCCAGTTTCGGACTGCGGAATTTTCTCGGAAATTGGAAGCTTCACGAGCTTGATCACGTCGTCGAACGAGACATTGCCGTTCGGATTCGGCAACATCGCTGACGCGACGCCTTTCGGGATGAATCATCAGTTTCAAAATCAATGGACGCCACAGAGAATGATGAACGTTAACGATGAACTAAAGATGCAGGAAATCACAGGCGGCGGCGGCGGCGGGTACATGGATCAGACGGCTCACGTCGATCCATCAGGGCTGCAGAATAGCAGATCAAGTAACATTGGATTCGGACCGTTGGATTGGCAGTCAAACGGAGATCATCAGGTTCTTTTTGATCTTCCCAACGCCGTTGATCAAGCATACTGGAGTCAAAATCAATGGAGTGATCCAGACCCCCCCAATCTGTACCTTCCGTAA 936 53.31 MQGIHSIAGGNRLFGGGGGGGGDRSLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRASKSKPTSDTTGPPPPLHEQKSTSHSSSESSSLTAATTTAAAATEAVSAPSTSSASTLLSVQDSKLFPTPSTNTNFEMAAAPVSDCGIFSEIGSFTSLITSSNETLPFGFGNIADATPFGMNHQFQNQWTPQRMMNVNDELKMQEITGGGGGGYMDQTAHVDPSGLQNSRSSNIGFGPLDWQSNGDHQVLFDLPNAVDQAYWSQNQWSDPDPPNLYLP 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1151250 1152185 - CmaCh11G002280.1 Cma11g00228 302737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00228 311 MobiDBLite consensus disorder prediction 84 132 - -
Cma11g00228 311 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Cma11g00228 311 MobiDBLite consensus disorder prediction 107 132 - -
Cma11g00228 311 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Cma11g00228 311 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 299 IPR045174 GO:0003700|GO:0006355
Cma11g00228 311 PANTHER DOF ZINC FINGER PROTEIN 4 17 299 - -
Cma11g00228 311 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Cma11g00228 311 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00228 - - - cmax:111469312 560.836
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00228 Cma13g00889 CCT
Cma10g00281 Cma11g00228 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00228 Cma-Chr11:1151250 Cma13g00889 Cma-Chr13:7183557 3.02E-33 dispersed
Cma10g00281 Cma-Chr10:1252523 Cma11g00228 Cma-Chr11:1151250 2.34E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g423 . Blo16g00241 . Bda15g00634 Bpe12g00514 . Bma06g00234 Bma12g01019 Cmo13g00918 . Cma10g00281 Cma11g00228 Car10g00264 Car11g00205 Sed08g0300 Cpe20g00241 Cpe04g01443 Bhi02g00056 Tan09g2004 Cmetu02g1182 . Hepe09g0293 . . Cla06g01522 Cam06g1679 Cec06g1740 Cco06g1737 Clacu06g1644 Cmu06g1592 Cre06g2403 Cone2ag0789 . Cone13ag0023 Cone19ag0032 Lsi02g00370 Csa01g00849 . Cme12g01696 Blo13g00035 . Bda11g01633 . . Bpe15g00563 Bma03g00870 Bma08g00252 . Cmo10g00299 Cmo11g00231 Cma13g00889 . Car13g00729 Car18g00159 . Cpe18g00719 . . . . . . . . . . . . . . Lsi06g01388 Csa01g00332 Chy02g02411 Cme02g01804
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma13g00606 CCT,CST 16 156 C2C2-Dof Transcription Factor Family AT1G29160 56.9 1.6e-40 163.3
Cma18g00411 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 51.7 3.5e-40 162.2
Cma03g01320 CCT,CST 11 164 C2C2-Dof Transcription Factor Family AT1G29160 53.0 4.6e-40 161.8
Cma07g00189 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 53.8 6.0e-40 161.4
Cma18g00411 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 51.8 4.0e-41 165.2
Cma13g00606 CCT,CST 16 156 C2C2-Dof Transcription Factor Family AT2G34140 56.4 4.0e-41 165.2
Cma03g01320 CCT,CST 11 164 C2C2-Dof Transcription Factor Family AT2G34140 51.8 1.2e-37 153.7
Cma07g00189 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 50.9 4.6e-37 151.8
Cma04g02639 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 65.2 8.6e-40 161.8
Cma15g00398 . 1 128 C2C2-Dof Transcription Factor Family AT2G37590 61.7 8.1e-38 155.2
Cma06g00304 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT2G37590 64.8 1.4e-37 154.5
Cma14g00157 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 62.4 1.2e-36 151.4
Cma04g01188 CST 1 134 C2C2-Dof Transcription Factor Family AT2G37590 63.8 1.5e-36 151.0
Cma13g00133 CCT,CST,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 2.0e-36 150.6
Cma11g00141 CCT,CST,ECH 132 478 C2C2-Dof Transcription Factor Family AT3G47500 51.6 5.0e-83 305.8
Cma14g00157 CCT,CST,ECH 59 132 C2C2-Dof Transcription Factor Family AT5G02460 93.2 8.8e-39 158.7
Cma01g00595 CCT,CST,ECH 1 130 C2C2-Dof Transcription Factor Family AT5G02460 55.0 2.0e-38 157.5
Cma06g00304 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT5G02460 60.4 2.0e-38 157.5
Cma13g00133 CCT,CST,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 4.4e-38 156.4
Cma15g00398 . 1 128 C2C2-Dof Transcription Factor Family AT5G02460 61.9 2.4e-36 150.6
Cma14g00157 CCT,CST,ECH 53 139 C2C2-Dof Transcription Factor Family AT3G55370 79.3 2.6e-37 153.7
Cma13g00133 CCT,CST,ECH 19 157 C2C2-Dof Transcription Factor Family AT3G55370 50.6 5.8e-37 152.5
Cma03g00431 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.8e-37 152.5
Cma11g00228 CCT,CST 30 311 C2C2-Dof Transcription Factor Family AT5G60850 51.9 4.0e-47 186.0
Cma10g00281 CCT,CST 26 318 C2C2-Dof Transcription Factor Family AT5G60850 52.8 8.8e-47 184.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004522 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35792 PF02701 zf-Dof 3.80E-33 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00228 Cma_Chr11 FPKM 27.836538 33.257885 24.932291 25.808676 19.082113 16.604473 17.722345 33.349297 39.763931 36.072731