Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00228 ATGCAGGGCATACACTCGATTGCTGGCGGAAACCGCTTGTTTGGCGGCGGAGGAGGTGGCGGCGGGGACCGTAGCCTGAGGCCCCACCTCCACCACCACCAGAACCACCAAGCCTTGAAGTGCCCAAGGTGTGATTCTCTCAATACAAAGTTCTGTTATTACAATAACTATAATCTCTCTCAGCCTCGTCACTTCTGCAAGAGCTGCCGCCGTTACTGGACCAAAGGCGGCGTCCTACGCAACGTTCCTGTCGGTGGTGGCTGTCGGAAAACCAAACGAGCTTCCAAGTCCAAGCCGACATCTGACACAACCGGGCCTCCACCTCCACTTCACGAACAGAAATCCACCTCTCATTCTAGCAGTGAGAGCTCTAGCCTCACCGCCGCAACAACAACCGCCGCCGCGGCAACCGAGGCTGTTTCCGCTCCGTCTACGAGTTCCGCGTCGACTCTATTAAGCGTACAGGATTCGAAATTGTTCCCCACTCCAAGCACAAACACGAATTTCGAGATGGCGGCAGCTCCAGTTTCGGACTGCGGAATTTTCTCGGAAATTGGAAGCTTCACGAGCTTGATCACGTCGTCGAACGAGACATTGCCGTTCGGATTCGGCAACATCGCTGACGCGACGCCTTTCGGGATGAATCATCAGTTTCAAAATCAATGGACGCCACAGAGAATGATGAACGTTAACGATGAACTAAAGATGCAGGAAATCACAGGCGGCGGCGGCGGCGGGTACATGGATCAGACGGCTCACGTCGATCCATCAGGGCTGCAGAATAGCAGATCAAGTAACATTGGATTCGGACCGTTGGATTGGCAGTCAAACGGAGATCATCAGGTTCTTTTTGATCTTCCCAACGCCGTTGATCAAGCATACTGGAGTCAAAATCAATGGAGTGATCCAGACCCCCCCAATCTGTACCTTCCGTAA 936 53.31 MQGIHSIAGGNRLFGGGGGGGGDRSLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRASKSKPTSDTTGPPPPLHEQKSTSHSSSESSSLTAATTTAAAATEAVSAPSTSSASTLLSVQDSKLFPTPSTNTNFEMAAAPVSDCGIFSEIGSFTSLITSSNETLPFGFGNIADATPFGMNHQFQNQWTPQRMMNVNDELKMQEITGGGGGGYMDQTAHVDPSGLQNSRSSNIGFGPLDWQSNGDHQVLFDLPNAVDQAYWSQNQWSDPDPPNLYLP 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1151250 1152185 - CmaCh11G002280.1 Cma11g00228 302737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00228 311 MobiDBLite consensus disorder prediction 84 132 - -
Cma11g00228 311 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Cma11g00228 311 MobiDBLite consensus disorder prediction 107 132 - -
Cma11g00228 311 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Cma11g00228 311 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 299 IPR045174 GO:0003700|GO:0006355
Cma11g00228 311 PANTHER DOF ZINC FINGER PROTEIN 4 17 299 - -
Cma11g00228 311 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Cma11g00228 311 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00228 Cma13g00889 CCT
Cma10g00281 Cma11g00228 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00228 Cma-Chr11:1151250 Cma13g00889 Cma-Chr13:7183557 3.02E-33 dispersed
Cma10g00281 Cma-Chr10:1252523 Cma11g00228 Cma-Chr11:1151250 2.34E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35792 PF02701 zf-Dof 3.80E-33 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00228 - - cmax:111469312 560.836