Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00228 | ATGCAGGGCATACACTCGATTGCTGGCGGAAACCGCTTGTTTGGCGGCGGAGGAGGTGGCGGCGGGGACCGTAGCCTGAGGCCCCACCTCCACCACCACCAGAACCACCAAGCCTTGAAGTGCCCAAGGTGTGATTCTCTCAATACAAAGTTCTGTTATTACAATAACTATAATCTCTCTCAGCCTCGTCACTTCTGCAAGAGCTGCCGCCGTTACTGGACCAAAGGCGGCGTCCTACGCAACGTTCCTGTCGGTGGTGGCTGTCGGAAAACCAAACGAGCTTCCAAGTCCAAGCCGACATCTGACACAACCGGGCCTCCACCTCCACTTCACGAACAGAAATCCACCTCTCATTCTAGCAGTGAGAGCTCTAGCCTCACCGCCGCAACAACAACCGCCGCCGCGGCAACCGAGGCTGTTTCCGCTCCGTCTACGAGTTCCGCGTCGACTCTATTAAGCGTACAGGATTCGAAATTGTTCCCCACTCCAAGCACAAACACGAATTTCGAGATGGCGGCAGCTCCAGTTTCGGACTGCGGAATTTTCTCGGAAATTGGAAGCTTCACGAGCTTGATCACGTCGTCGAACGAGACATTGCCGTTCGGATTCGGCAACATCGCTGACGCGACGCCTTTCGGGATGAATCATCAGTTTCAAAATCAATGGACGCCACAGAGAATGATGAACGTTAACGATGAACTAAAGATGCAGGAAATCACAGGCGGCGGCGGCGGCGGGTACATGGATCAGACGGCTCACGTCGATCCATCAGGGCTGCAGAATAGCAGATCAAGTAACATTGGATTCGGACCGTTGGATTGGCAGTCAAACGGAGATCATCAGGTTCTTTTTGATCTTCCCAACGCCGTTGATCAAGCATACTGGAGTCAAAATCAATGGAGTGATCCAGACCCCCCCAATCTGTACCTTCCGTAA | 936 | 53.31 | MQGIHSIAGGNRLFGGGGGGGGDRSLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRASKSKPTSDTTGPPPPLHEQKSTSHSSSESSSLTAATTTAAAATEAVSAPSTSSASTLLSVQDSKLFPTPSTNTNFEMAAAPVSDCGIFSEIGSFTSLITSSNETLPFGFGNIADATPFGMNHQFQNQWTPQRMMNVNDELKMQEITGGGGGGYMDQTAHVDPSGLQNSRSSNIGFGPLDWQSNGDHQVLFDLPNAVDQAYWSQNQWSDPDPPNLYLP | 311 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1151250 | 1152185 | - | CmaCh11G002280.1 | Cma11g00228 | 302737 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00228 | 311 | MobiDBLite | consensus disorder prediction | 84 | 132 | - | - | |
Cma11g00228 | 311 | Pfam | Dof domain, zinc finger | 37 | 93 | IPR003851 | GO:0003677|GO:0006355 | |
Cma11g00228 | 311 | MobiDBLite | consensus disorder prediction | 107 | 132 | - | - | |
Cma11g00228 | 311 | ProSitePatterns | Zinc finger Dof-type signature. | 41 | 77 | IPR003851 | GO:0003677|GO:0006355 | |
Cma11g00228 | 311 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 17 | 299 | IPR045174 | GO:0003700|GO:0006355 | |
Cma11g00228 | 311 | PANTHER | DOF ZINC FINGER PROTEIN 4 | 17 | 299 | - | - | |
Cma11g00228 | 311 | ProSiteProfiles | Zinc finger Dof-type profile. | 39 | 93 | IPR003851 | GO:0003677|GO:0006355 | |
Cma11g00228 | 311 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g00228 | Cma13g00889 | CCT | |
Cma10g00281 | Cma11g00228 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g00228 | Cma-Chr11:1151250 | Cma13g00889 | Cma-Chr13:7183557 | 3.02E-33 | dispersed | |
Cma10g00281 | Cma-Chr10:1252523 | Cma11g00228 | Cma-Chr11:1151250 | 2.34E-150 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35792 | PF02701 | zf-Dof | 3.80E-33 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00228 | - | - | cmax:111469312 | 560.836 |