Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00230 ATGGATTTTTGGAACAAAGCTCGAAGTTTTGCTGAGGAAACAGCGAAGCGCTCACAGGAGCTGACTCTGGAAGCTGCAAGGCGTTCCCAAGAGCTCACGATCGGATCCTCTAGACTGTCCGATATCGTTTCCGAGACTGCTAAACGCTCCAAGGAATTTGCTAACGAAGCCTCCAAGCGAGCTGAACAAATTAAAGCGGAAGCTGTTAAACGAGCTGATCTTATCAAGCACTTGGTCGAAGGGTCTTCGCCGTCTGGCGCGCTGGAGGAGAACGCTTATGATGAAGAGACGCGGGAGGAGGATTTGCAGCGGTTTGGAATAAACGAAGAGCTGAGGGACTTCGTCAAAGGGATCACTATGAGTACATTTCGAGATTTCCCACTCGAAGATGATTCACAAATGTCCAGTGTCCCCACAGTCTCAAATATTAGTCAGGATCTAACTGAGTGGCAGGCGAAGCATGCAAGTCTTGTTCTTTCAACTGTCAAGGAAATTTCTAAGTTACGTTATGAATTGTGTCCACGCATCATGAAAGAGAGAAAATTCTGGAGGATTTACTTTATGTTGGTGAACAGGCACATAGCACCCTATGAGAAAAAGTACATGGAGGATGCCATACTGACATCAGCTAAGCAAGCTGAAGATGGAAAGATGGAACCTGTTAAAACTGAAATAACATCTACATCTCAAGAGGAGAAGAAAGTTGCTCCAGCCTCCTCATCAAGTGATCAGGAGAAGAAAATTGCTTCAACCTCCTCGTCAAGTGGTCAAGAGAAGAAAAATGCTCTAACCTCATCAAGTGATCAAGACTTGGATGTATTTCTTCTTGGGGATCTTGGAGACAGCGATGAAGTTCTAGATGATGGAGATGAGGACTTTGATGATGACTTTGACAAGATGGTTGACAGTTCGGATGGCGAGCAAGACAAATTTGGGATGAATGATGATCCAATAAAACCCAAGTCTTCTCCCGCCACTAGAGCAGCTCTTGCATCTGCACCTGTGCTGGAGAAAAATGGATTTGAATCTCTGGTCTTTAAATAA 1044 44.73 MDFWNKARSFAEETAKRSQELTLEAARRSQELTIGSSRLSDIVSETAKRSKEFANEASKRAEQIKAEAVKRADLIKHLVEGSSPSGALEENAYDEETREEDLQRFGINEELRDFVKGITMSTFRDFPLEDDSQMSSVPTVSNISQDLTEWQAKHASLVLSTVKEISKLRYELCPRIMKERKFWRIYFMLVNRHIAPYEKKYMEDAILTSAKQAEDGKMEPVKTEITSTSQEEKKVAPASSSSDQEKKIASTSSSSGQEKKNALTSSSDQDLDVFLLGDLGDSDEVLDDGDEDFDDDFDKMVDSSDGEQDKFGMNDDPIKPKSSPATRAALASAPVLEKNGFESLVFK 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1160847 1167354 + CmaCh11G002300.1 Cma11g00230 302739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00230 347 MobiDBLite consensus disorder prediction 281 324 - -
Cma11g00230 347 Pfam BSD domain 149 194 IPR005607 -
Cma11g00230 347 PANTHER BSD DOMAIN PROTEIN 1 307 - -
Cma11g00230 347 SMART wurzfinal6 142 194 IPR005607 -
Cma11g00230 347 ProSiteProfiles BSD domain profile. 142 194 IPR005607 -
Cma11g00230 347 MobiDBLite consensus disorder prediction 281 302 - -
Cma11g00230 347 MobiDBLite consensus disorder prediction 230 265 - -
Cma11g00230 347 Gene3D BSD domain 119 204 IPR035925 -
Cma11g00230 347 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 307 - -
Cma11g00230 347 MobiDBLite consensus disorder prediction 215 229 - -
Cma11g00230 347 MobiDBLite consensus disorder prediction 213 265 - -
Cma11g00230 347 SUPERFAMILY BSD domain-like 106 198 IPR035925 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00230 - - - bhj:120071581 437.187
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00279 Cma11g00230 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00230 Cma-Chr11:1160847 Cma01g01773 Cma-Chr1:11897853 1.39E-08 dispersed
Cma10g00279 Cma-Chr10:1238153 Cma11g00230 Cma-Chr11:1160847 4.48E-141 wgd
Cma11g00230 Cma-Chr11:1160847 Cma18g01085 Cma-Chr18:8939952 7.91E-84 wgd
Cma11g00230 Cma-Chr11:1160847 Cma04g01578 Cma-Chr4:7998597 5.25E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g420 . . . Bda15g00635 Bpe12g00513 . . . . . Cma10g00279 Cma11g00230 Car10g00262 Car11g00207 Sed08g0303 . Cpe04g01528 Bhi02g00053 Tan09g2002 Cmetu02g1950 . . . . Cla06g01625 Cam06g1806 Cec06g1857 Cco06g1863 Clacu06g1766 . Cre06g2528 . Cone16ag0242 . . . . . . . . . . . . . . . Cmo10g00296 Cmo11g00233 . . . . . Cpe18g00817 . . . . . . . . . . . . . . Lsi06g01506 Csa01g00330 Chy02g02413 Cme02g01923
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008148 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00230 Cma_Chr11 FPKM 9.691507 7.941797 5.837808 5.741941 4.833929 4.740786 4.916627 12.993844 12.022317 12.288074