Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00239 ATGCCTCAAGATACGCTTCCTAGCATTGAATCACCTCGGAGGCGTTCTGGCCTTTTGAGAGATCAAGTTCAGTTAGTAAGGAAGAAGGACTCAAATCGATATGAGATACTTAGAATTCAAGACCCTCTGTCATTTGATAAAGGTTTCTTCATTGTAATTCGGGCATGCCAGTTGCTGTCTCAAAATAATGATGGGATAATCCTAGTTGGAGTGGCAGGCCCTTCTGGAGCTGGGAAGACAGTATTCACTGAGAAGGTGCTTAACTTTATACCCAGCATTGCTGTTATCACGATGGATAACTACAATGATGCTAGTCGTATCATCGATGGCAACTTTGATGACCCACGTCTAACGGATTATGATACATTGCTCGAAAATATTCATGGTTTAAGGCAAGGAAAATCAGTCCAGGTTCCTATTTATGATTTCAAGACCAGTAGTCGTGTGGGTTACAGAACTCTTGAAGTCCCCAAGTCAAGAATCGTCATTATTGAGGGCATTTATGCTTTAAGTGAAAAACTGCGTCCATTGCTAGATCTTCGTGTATCAATCACCGGTGGTGTTCATTTTGACTTAGTTAAACGGGTACTACGCGATATCCAGCGAGCTGGCCAAGAGCCAGAAGAAATAATACATCAAGTTTCCGAAACGGTTTATCCAATGTATAAAGCTTTTATAGAGCCAGATCTTCAGACTGCCCATATTAGAATTATCAACAAATTCAATCCCTTTACTGGTTTCCAGAATCCTACTTACATTCTTAAGTCAACAAAAGCAGTACCTATGGATCAAATTAAGGCTGTTATATCTGAAAATCACAAGGAGTCTACAGAGGAAACTTATGACATTTATCTTCTACCTCCTGGTGAAGATCCTGAAGCTTGTCAATCCTATCTCAGGATGAGGAACAGGGATGGCAAATACAATCTCATGTTCGAGGAGTGGGTTACAGATATTCCATTCATAATATCGCCTAGAATAACGTTCGAAGTTAGTGTCCGCCTTCTTGGCGGGCTTATGGCACTGGGATACACAATTGCAACCATTCTTAAAAGAAGCAGCCACATATTCTCTGATGATAGGGTGTGTGTCAAGATTGATTGGTTGGAGCAACTTAACCGGAAATATATTCAGGTGCAAGGAAAAGATCGGGTCCATGTTAAGCACATTGCTGCGCAGTTGGGTTTGGATGGTTCCTATATCCCTCGAACCTATATAGAACAAATACAGCTAGAGAAGCTTGTCAATGATGTTATGGCCTTGCCAGATGATTTAAAAACCAGGCTCAGCATAGATGACGATTCAGTTTCGAGTCCAAAGGAAGCCCTTTCCCGAGCTTCTGCAGATAGGAGAAATAAGTACCTAAACCGTGGATTATCACAATCGTTTTCCAATCGGAGGGACAAGAGCTTGTCAAAGCTGACAAAGCTTGCTGTTAATAGTGGAAGGTTTGATGTCAGGGCTCCAGATTCCCCTGCAGTAGTCTCTAACCAGGGAGCCATTACACAACTTTCAGAACAGATTTCTACTCTCAGCGAGAGGATGGATGAGTTCACAACACGTATTGATGAGCTGAACTCCAAGATCTCTACTAGAAACGTTTCTGCTAGCCAGCAGAACTTGTCTTCACAAGCCGATGCGGGCAACAACGGCTCCGGGGCAACTTCAATTTTCATATCTGGCTTGAGTAATGGTGCGTTAACTGGATCACTGCTGTCTCATTCTTTGTCGTCCTCCCAATTGGCTAAGGAATCACCCCTGCTAGAAGAGATACAAAATATAGCACGGGCGCAGCGTCAAATTATCCTCCAAGTTGACAATTTGAGCAATCTTCTCCGGGAGTACTCGAGCGAGAGGAATCATCGGGGCAAAGCTGACAATGAGGGGATGTGGAAGATTGCTGATTTTGAATACATCAGAAACCCACTTTTACTAACGCTTGCAGTTGGTAGTTTAGGCTTACTTTTGTTCAAGAGCCTCAGAAATGATTCCTTTTGA 1998 42.69 MPQDTLPSIESPRRRSGLLRDQVQLVRKKDSNRYEILRIQDPLSFDKGFFIVIRACQLLSQNNDGIILVGVAGPSGAGKTVFTEKVLNFIPSIAVITMDNYNDASRIIDGNFDDPRLTDYDTLLENIHGLRQGKSVQVPIYDFKTSSRVGYRTLEVPKSRIVIIEGIYALSEKLRPLLDLRVSITGGVHFDLVKRVLRDIQRAGQEPEEIIHQVSETVYPMYKAFIEPDLQTAHIRIINKFNPFTGFQNPTYILKSTKAVPMDQIKAVISENHKESTEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDIPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFSDDRVCVKIDWLEQLNRKYIQVQGKDRVHVKHIAAQLGLDGSYIPRTYIEQIQLEKLVNDVMALPDDLKTRLSIDDDSVSSPKEALSRASADRRNKYLNRGLSQSFSNRRDKSLSKLTKLAVNSGRFDVRAPDSPAVVSNQGAITQLSEQISTLSERMDEFTTRIDELNSKISTRNVSASQQNLSSQADAGNNGSGATSIFISGLSNGALTGSLLSHSLSSSQLAKESPLLEEIQNIARAQRQIILQVDNLSNLLREYSSERNHRGKADNEGMWKIADFEYIRNPLLLTLAVGSLGLLLFKSLRNDSF 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1218814 1225214 + CmaCh11G002390.1 Cma11g00239 302748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00239 665 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 7 652 - -
Cma11g00239 665 Pfam Phosphoribulokinase / Uridine kinase family 69 237 IPR006083 GO:0005524|GO:0016301
Cma11g00239 665 ProSiteProfiles CYTH domain profile. 249 411 IPR023577 -
Cma11g00239 665 Gene3D - 464 545 - -
Cma11g00239 665 Gene3D - 67 248 IPR027417 -
Cma11g00239 665 PRINTS Uridine kinase signature 66 83 - -
Cma11g00239 665 PRINTS Uridine kinase signature 133 148 - -
Cma11g00239 665 PRINTS Uridine kinase signature 189 199 - -
Cma11g00239 665 PRINTS Uridine kinase signature 225 238 - -
Cma11g00239 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 237 IPR027417 -
Cma11g00239 665 Gene3D - 257 414 - -
Cma11g00239 665 SUPERFAMILY CYTH-like phosphatases 261 408 IPR033469 -
Cma11g00239 665 Coils Coil 501 528 - -
Cma11g00239 665 Pfam CYTH domain 271 405 IPR023577 -
Cma11g00239 665 PANTHER URIDINE KINASE 7 652 - -
Cma11g00239 665 CDD UMPK_like 68 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00239 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101210506 1152.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00269 Cma11g00239 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00239 Cma-Chr11:1218814 Cma11g01493 Cma-Chr11:9822021 8.42E-16 dispersed
Cma04g00029 Cma-Chr4:145507 Cma11g00239 Cma-Chr11:1218814 4.23E-62 transposed
Cma10g00269 Cma-Chr10:1195804 Cma11g00239 Cma-Chr11:1218814 0 wgd
Cma11g00239 Cma-Chr11:1218814 Cma18g01072 Cma-Chr18:8867931 0 wgd
Cma11g00239 Cma-Chr11:1218814 Cma04g01561 Cma-Chr4:7931748 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g403 Blo04g00806 . . . . . . . . . Cma10g00269 Cma11g00239 Car10g00252 Car11g00218 . . Cpe04g01432 Bhi02g00041 Tan09g1983 . . . . . . . . . . . . . . . Cone19ag0022 . . . . . . . Bda14g00899 . Bpe15g00559 Bma03g00874 . . Cmo10g00287 Cmo11g00243 . . . . . Cpe18g00728 . . . . . . . . . . . . . . Lsi06g01374 Csa01g00316 . Cme02g01792
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001604 2 5 3 2 2 1 4 1 1 1 1 1 4 2 2 4 1 3 4 1 2 2 3 2 2 2 2 5 4 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00239 Cma_Chr11 FPKM 8.905373 10.955959 15.304439 14.296241 10.745874 10.133145 13.267259 5.584005 5.917606 6.312078