Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00245 ATGGATGCCCGCCGAGCCTCTCGCGTCGTCATCGACCCCAAAGTTCGGCAGGTCGGCTTCTTCACCCCCGACGCCCCGCATTCTCCGGGTGGGGCCCTTCCCACTCCGCCCGACTGCACTACTTCACTGCTCCCCGACTCTCCGACCAGTAATTCTCTGTCTCCTGTAATGATTCCGCCTCCACGTCACCCTTCCGACAACCTTTCCTCCCGGTCGGCTGGAAATTGGAGGCACCCTGAGGACCTGGTCCGTGTTGGGAGCCACAATCCCTCAGAAATGCTGCTCCGATCGTCGCCGATGGCGTCGCCCTCGACTCGAATTGCAGGTGAAGAATTGGAATCCTCGGAGGTTTCGTCGGCCTCCGTCTTGCTTCGGCGGAGTGGTTCGGGGAAGTTAGCCTCTAGCTGCCCTGGCGTTGGATTCTACATGGCGGCTAAGCGGGGGGATAATTTGGAGACAATGCCTGCCAATAGTGTGAGGACATTGGGAACTAACAAGCCTGCTGAAGCGACAGAAAAGATGGGAGGAGCATCCACAGAGGCCAAAGACCATCTTCCTTCAAGTTCGAAACCCTTGAAGGAAAAAACTACTAAGGCTGAAAGACGGGCTTTACAGGAGGCTCAGCGAGCAGCAAAAGTTTCTGCAAAAGGTGAGGCAAATAAGTCAGGTTCTGCCTCTGGGGCAACAGCCGGTAAAGTTGGGAAACAGCCTTCAACAGTTAAAGGTCCTGCTACACCTTCAGTTGCATCTGCTGACAATAGAGGAGGTGATCGTATTGTTGATAAAGAAAGGAAGAAAGATGCCCCCCCTCCACGTATGCAATTTGATGATAAAAATCGGGTCGAAAGGGCTAAAAAGCGAGCTGTGTTTAATCAAACTGAAGCAAGAAATAGGGTTGCATTATTTCGCCATTTGCCACAATATGAGCAGGGGACTCAACTTCCTGATCTTGTGTCAAAATTTTTCCAACTCGATACCTTTCATCCTGCCATTTACAAGGTTGGTTTACAATACATGGCTGGAGATATATCTGGCGGTAATGCTCGTTGTATAGCAATGCTCCATGCATTTCAGGAGGCTATTAAAGACTACTCAACTCCGCCACAGAAATCTCTCGTTAGAGATTTAACTGCAAAAATTGGTGTCTATGTGTCATTCTTTAATGAATGCAGGCCATTGTCTGTTAGCATGGGTAATGCAATCAGATTTTTGAAAAATCGCATTGCCAAATTACCACCAAGTCTTCTAGAATCTGAGGCGAAAGCTACACTTTCCCTAGATATCAGTCGTTTTATCAACGAGAAGATAATGCTTGCTGATGAGGTCATAGTTAGACACGCTGCTACGAAGATCAGGGATGGAGACGTTCTTCTCACATATGGATCACCCTGTGTTGTAGAGATGCTTCTATTGTATGCTCATGATCTTGGGAAACAATTTCGTGTTGTAGTGGTAGATTCTCGACCAAAACTTGAGGGCCAAGCATTGCTGCGTAGGCTGATAGCAAAGGGCCTCAGTTGTACTTACACTCATATAAATGCTATTTCCTATGTGATGCGTGAAGTAAACCGTGTTTTTCTGGGTGCTGCTGCTGTATTAGCTAACGGAACTGTATATTCAAGAGTGGGGACTGCAGGTATTGCCATGGTTGCAGATGCATTTCATGTTCCAGTATTATTCTGCTGTGAAGCATATAAATTTCATGAAAGGGTACAACTTGATTCAATATGCTTTAATGAATTAGGCGACCCAGATGCTATATCCAAGATTTCAGGAAGGGCTGATATTAGTTATCTAGATAGTCTGACTTCTAAAGAACATTTTCAACTTCTGAATTTAATGTATGATGCTACACCTTCAGATTACATCTCAATGATTGTCACAGATTATGGCATGATCCCAGCAACAAGCGTGCCTGTGATCGTACGCGAGTATCGCAGAGAGCACCTCCTATGGGTATGA 1962 46.74 MDARRASRVVIDPKVRQVGFFTPDAPHSPGGALPTPPDCTTSLLPDSPTSNSLSPVMIPPPRHPSDNLSSRSAGNWRHPEDLVRVGSHNPSEMLLRSSPMASPSTRIAGEELESSEVSSASVLLRRSGSGKLASSCPGVGFYMAAKRGDNLETMPANSVRTLGTNKPAEATEKMGGASTEAKDHLPSSSKPLKEKTTKAERRALQEAQRAAKVSAKGEANKSGSASGATAGKVGKQPSTVKGPATPSVASADNRGGDRIVDKERKKDAPPPRMQFDDKNRVERAKKRAVFNQTEARNRVALFRHLPQYEQGTQLPDLVSKFFQLDTFHPAIYKVGLQYMAGDISGGNARCIAMLHAFQEAIKDYSTPPQKSLVRDLTAKIGVYVSFFNECRPLSVSMGNAIRFLKNRIAKLPPSLLESEAKATLSLDISRFINEKIMLADEVIVRHAATKIRDGDVLLTYGSPCVVEMLLLYAHDLGKQFRVVVVDSRPKLEGQALLRRLIAKGLSCTYTHINAISYVMREVNRVFLGAAAVLANGTVYSRVGTAGIAMVADAFHVPVLFCCEAYKFHERVQLDSICFNELGDPDAISKISGRADISYLDSLTSKEHFQLLNLMYDATPSDYISMIVTDYGMIPATSVPVIVREYRREHLLWV 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1244761 1250245 + CmaCh11G002450.1 Cma11g00245 302754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00245 653 SUPERFAMILY NagB/RpiA/CoA transferase-like 300 645 IPR037171 -
Cma11g00245 653 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 1 651 - -
Cma11g00245 653 MobiDBLite consensus disorder prediction 148 275 - -
Cma11g00245 653 Pfam Initiation factor 2 subunit family 343 634 IPR000649 GO:0044237
Cma11g00245 653 MobiDBLite consensus disorder prediction 186 207 - -
Cma11g00245 653 MobiDBLite consensus disorder prediction 91 119 - -
Cma11g00245 653 MobiDBLite consensus disorder prediction 219 233 - -
Cma11g00245 653 MobiDBLite consensus disorder prediction 255 275 - -
Cma11g00245 653 MobiDBLite consensus disorder prediction 1 119 - -
Cma11g00245 653 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 1 651 - -
Cma11g00245 653 Gene3D - 439 645 IPR042529 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00256 Cma11g00245 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00245 Cma-Chr11:1244761 Cma15g00822 Cma-Chr15:4132604 8.17E-09 dispersed
Cma11g00245 Cma-Chr11:1244761 Cma11g00247 Cma-Chr11:1252220 0 proximal
Cma10g00256 Cma-Chr10:1139004 Cma11g00245 Cma-Chr11:1244761 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00245 K03680 - csv:101215104 926.391