Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00247 | ATGGATGCTCGGCGAGGATCCCGCGTCGTCAAACCCAAAGTTCGTCAGGTCGGATTCTTCACCCTCGACGCTCCAAACCCCCCCGGACGCTCCCTATCCGGTCCGGTCGGCTTTGGTTCTTCTCAACAATCCCTCTCTCCTCCCACCGATCCCTTGTCTCCGGTCATGATTCCTCCTCCTCGTCATCTCTCCGATAACTTTGCCTCACGCTCTACTATTCTTCCTGTTCCGACTCCGGCCAATTGGAGGAATTCCGGTGATCAGATTCATGTTGGCAGTTATAACCCTTCCCAGACCCTGCTTGCGACTTCTCCTTCGAGTAGAATTTGGGACGATGAGCTGGAGATGTCCGAGGATTCTTCCACCTCCGTTCCGTATCGCCGGAGTGGTTCCGGGAAGATTGCGTCGAGCCTTCCTGGCCTTGGAGTCCACATGGCGGCTAAGTCGTCTGAGAATTCGCAGGCGGTGCCTCTCAGGACGCTGGGACCTAATAAGCCTTCTGGAGTTGCAGAAAATAATGGAGGGGTGCCCACAGAGGTGCAAAATCAACCACCGCCATCAAGTTCAAAATCCCTGAAGGCAAAAACAACGAAGGCTGAAAGACGGGCTCTGCAGGAGGCACAACGAGCAGCAAAAGTTTCTGCAAAAGGTGAGACGAATAAGTCAGGTACTGCTCCTGGTAAAACTGTGAAGCAGCCTTCGGCTATGAAAGATAGCACTGCTGCACCTTCGGTTGCATCTACTGATAAAAGAGGAGGTGATCGCACACTTGATAAAGAAAGGAAGAAAGATGCGCCCCATCCACGAATGCAGTTTGATGATAAAAATAGGGTAGAAAAGGCTAAAAAACGAGCAGTTTTCAACCAAACTGAAGCTCGAAATAGGGTTGAATTATTTCGCCATTTGCCTCAATATGAGCAGGGAACTCAGCTTCCTGATCTTGTGTCGAAGTTTTTCCAACTTGACACCATTCATCCTGCCATTTACAAGGTTGGTTTACAATATATGGCCGGAGATATATGTGGAGGCAATGCTCGCTGTATTGCTATGCTTCATGCCTTTCAACAGGCCATCAAAGACTACTCAACTCCGCCACAGAAATCTCTGGGTAGAGATTTAACTGCAAAAATTGGTGGCTATGTGTCATTCTTCAACGAGTGCAGGCCACTGTCTGTTAGCATGGGAAATTCAATTAGGTTTCTGAAGAACCGCATTGCCAAATTACCAGTGAATCTTCTGGAATCTGAAGTAAAAGCTACACTTTGCTCAGATATTGATCGCTTTATCAATGAGAAGATTATCATTGCAGATGAGGTCATAGTTAGACATGCTGCTACTAAAATCAGGGATGGAGATGTTCTTCTCACATATGGATCATCATGTGCTGTAGAGATGCTTCTATTATATGCACATGAACTCGGAAAAGAATTCCGTGTTGTGGTGGTGGATTCCCGACCAAAACTGGAAGGGCAAGCATTGCTTCGTAGGCTAATAGCAAGCGGCCTAAAGTGTACCTACACTCATATAAATGCTATTTCTTACGTGATGCACGAAGTAACACGAGTTTTTCTGGGGGCTGCTGCAGTATTGTCTAATGGAACTGTATATTCTAGAGTGGGAACTGCAGGTGTTGCCATGGTTGCTAATGCATTCCATGTGCCAGTCTTAATCTGCTGCGAAGCCTATAAATTTCATGAAAGGGTACAGCTTGACTCAATATGTTTCAATGAATTAGTCGCATACCTATACTCTTATCAGGTTGGTTTACAATATATGGCCGGAGATATATGTGGAGGCAATGCTCGCTGTATTGCTATGCTTCATGCCTTTCAACAGGCCATCAAAGACTACTCAACTCCGCCACAGAAATCTCTGGGTAGAGATTTAACTGCAAAAATTGGTGGCTATGTGTCATTCTTCAACGAGTGCAGGCCACTGTCTGTTAGCATGGGAAATTCAATTAGGTTTCTGAAGAACCGCATTGCCAAATTACCAGTGAATCTTCTGGAATCTGAAGTAAAAGCTACACTTTGCTCAGATATTGATCGCTTTATCAATGAGAAGATTATCATTGCAGATGAGGTCATAGTTAGACATGCTGCTACTAAAATCAGGGATGGAGATGTTCTTCTCACATATGGATCATCATGTGCTGTAGAGATGCTTCTATTATATGCACATGAACTCGGAAAAGAATTCCGTGTTGTGGTGGTGGATTCCCGACCAAAACTGGAAGGGCAAGCATTGCTTCGTAGGCTAATAGCAAGCGGCCTAAAGTGTACCTACACTCATATAAATGCTATTTCTTACGTGATGCACGAAGTAACACGAGTTTTTCTGGGGGCTGCTGCAGTATTGTCTAATGGAACTGTATATTCTAGAGTGGGAACTGCAGGTGTTGCCATGGTTGCTAATGCATTCCATGTGCCAGTCTTAATCTGCTGCGAAGCCTATAAATTTCATGAAAGGGTACAGCTTGACTCAATATGTTTCAATGAATTAGGTGATCCAGATGCTATCTCAAAGGTCCCAGGAAGGAAGGATGTTAATTATCTAGATAATTTGACTGCTAAAGAACAACTGCAATGTCTAAATTTAATGTATGATGCTACACCTTCAGATTATGTCTCAATGATTGTCACAGATTATGGCATGGTGGTCAAGCATCTAGATCCCGCCTACAAGTGTACCCGTGATCGTACGCGAGTATCGGAGAGAGCACCTGTGGATTTAAGGACTTCATTTGTAAGGAAGCTTATTTTTGCAAGGATGAATCATAGATGTTTGTTGCCGAAGCATGCTGCCAGAAGTTTTTACATTCAAAATCTGCAACTATATTTTAATTTTTAG | 2850 | 44.49 | MDARRGSRVVKPKVRQVGFFTLDAPNPPGRSLSGPVGFGSSQQSLSPPTDPLSPVMIPPPRHLSDNFASRSTILPVPTPANWRNSGDQIHVGSYNPSQTLLATSPSSRIWDDELEMSEDSSTSVPYRRSGSGKIASSLPGLGVHMAAKSSENSQAVPLRTLGPNKPSGVAENNGGVPTEVQNQPPPSSSKSLKAKTTKAERRALQEAQRAAKVSAKGETNKSGTAPGKTVKQPSAMKDSTAAPSVASTDKRGGDRTLDKERKKDAPHPRMQFDDKNRVEKAKKRAVFNQTEARNRVELFRHLPQYEQGTQLPDLVSKFFQLDTIHPAIYKVGLQYMAGDICGGNARCIAMLHAFQQAIKDYSTPPQKSLGRDLTAKIGGYVSFFNECRPLSVSMGNSIRFLKNRIAKLPVNLLESEVKATLCSDIDRFINEKIIIADEVIVRHAATKIRDGDVLLTYGSSCAVEMLLLYAHELGKEFRVVVVDSRPKLEGQALLRRLIASGLKCTYTHINAISYVMHEVTRVFLGAAAVLSNGTVYSRVGTAGVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELVAYLYSYQVGLQYMAGDICGGNARCIAMLHAFQQAIKDYSTPPQKSLGRDLTAKIGGYVSFFNECRPLSVSMGNSIRFLKNRIAKLPVNLLESEVKATLCSDIDRFINEKIIIADEVIVRHAATKIRDGDVLLTYGSSCAVEMLLLYAHELGKEFRVVVVDSRPKLEGQALLRRLIASGLKCTYTHINAISYVMHEVTRVFLGAAAVLSNGTVYSRVGTAGVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELGDPDAISKVPGRKDVNYLDNLTAKEQLQCLNLMYDATPSDYVSMIVTDYGMVVKHLDPAYKCTRDRTRVSERAPVDLRTSFVRKLIFARMNHRCLLPKHAARSFYIQNLQLYFNF | 949 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1252220 | 1259014 | + | CmaCh11G002470.1 | Cma11g00247 | 302756 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00247 | 949 | PANTHER | NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN | 585 | 886 | - | - | |
Cma11g00247 | 949 | PANTHER | NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN | 1 | 578 | - | - | |
Cma11g00247 | 949 | Gene3D | - | 435 | 581 | IPR042529 | - | |
Cma11g00247 | 949 | Gene3D | - | 691 | 890 | IPR042529 | - | |
Cma11g00247 | 949 | MobiDBLite | consensus disorder prediction | 20 | 66 | - | - | |
Cma11g00247 | 949 | MobiDBLite | consensus disorder prediction | 215 | 246 | - | - | |
Cma11g00247 | 949 | PANTHER | TRANSLATION INITIATION FACTOR EIF-2B | 1 | 578 | - | - | |
Cma11g00247 | 949 | Pfam | Initiation factor 2 subunit family | 341 | 579 | IPR000649 | GO:0044237 | |
Cma11g00247 | 949 | Pfam | Initiation factor 2 subunit family | 597 | 886 | IPR000649 | GO:0044237 | |
Cma11g00247 | 949 | MobiDBLite | consensus disorder prediction | 78 | 106 | - | - | |
Cma11g00247 | 949 | MobiDBLite | consensus disorder prediction | 251 | 279 | - | - | |
Cma11g00247 | 949 | SUPERFAMILY | NagB/RpiA/CoA transferase-like | 596 | 888 | IPR037171 | - | |
Cma11g00247 | 949 | SUPERFAMILY | NagB/RpiA/CoA transferase-like | 295 | 578 | IPR037171 | - | |
Cma11g00247 | 949 | MobiDBLite | consensus disorder prediction | 35 | 50 | - | - | |
Cma11g00247 | 949 | MobiDBLite | consensus disorder prediction | 174 | 193 | - | - | |
Cma11g00247 | 949 | PANTHER | TRANSLATION INITIATION FACTOR EIF-2B | 585 | 886 | - | - | |
Cma11g00247 | 949 | MobiDBLite | consensus disorder prediction | 78 | 279 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00830 | Cma-Chr8:5028613 | Cma11g00247 | Cma-Chr11:1252220 | 2.44E-11 | dispersed | |
Cma10g00256 | Cma-Chr10:1139004 | Cma11g00247 | Cma-Chr11:1252220 | 0 | dispersed | |
Cma11g00247 | Cma-Chr11:1252220 | Cma15g00822 | Cma-Chr15:4132604 | 5.62E-08 | dispersed | |
Cma11g00245 | Cma-Chr11:1244761 | Cma11g00247 | Cma-Chr11:1252220 | 0 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00247 | K03680 | - | csv:101215104 | 978.778 |