Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00247 ATGGATGCTCGGCGAGGATCCCGCGTCGTCAAACCCAAAGTTCGTCAGGTCGGATTCTTCACCCTCGACGCTCCAAACCCCCCCGGACGCTCCCTATCCGGTCCGGTCGGCTTTGGTTCTTCTCAACAATCCCTCTCTCCTCCCACCGATCCCTTGTCTCCGGTCATGATTCCTCCTCCTCGTCATCTCTCCGATAACTTTGCCTCACGCTCTACTATTCTTCCTGTTCCGACTCCGGCCAATTGGAGGAATTCCGGTGATCAGATTCATGTTGGCAGTTATAACCCTTCCCAGACCCTGCTTGCGACTTCTCCTTCGAGTAGAATTTGGGACGATGAGCTGGAGATGTCCGAGGATTCTTCCACCTCCGTTCCGTATCGCCGGAGTGGTTCCGGGAAGATTGCGTCGAGCCTTCCTGGCCTTGGAGTCCACATGGCGGCTAAGTCGTCTGAGAATTCGCAGGCGGTGCCTCTCAGGACGCTGGGACCTAATAAGCCTTCTGGAGTTGCAGAAAATAATGGAGGGGTGCCCACAGAGGTGCAAAATCAACCACCGCCATCAAGTTCAAAATCCCTGAAGGCAAAAACAACGAAGGCTGAAAGACGGGCTCTGCAGGAGGCACAACGAGCAGCAAAAGTTTCTGCAAAAGGTGAGACGAATAAGTCAGGTACTGCTCCTGGTAAAACTGTGAAGCAGCCTTCGGCTATGAAAGATAGCACTGCTGCACCTTCGGTTGCATCTACTGATAAAAGAGGAGGTGATCGCACACTTGATAAAGAAAGGAAGAAAGATGCGCCCCATCCACGAATGCAGTTTGATGATAAAAATAGGGTAGAAAAGGCTAAAAAACGAGCAGTTTTCAACCAAACTGAAGCTCGAAATAGGGTTGAATTATTTCGCCATTTGCCTCAATATGAGCAGGGAACTCAGCTTCCTGATCTTGTGTCGAAGTTTTTCCAACTTGACACCATTCATCCTGCCATTTACAAGGTTGGTTTACAATATATGGCCGGAGATATATGTGGAGGCAATGCTCGCTGTATTGCTATGCTTCATGCCTTTCAACAGGCCATCAAAGACTACTCAACTCCGCCACAGAAATCTCTGGGTAGAGATTTAACTGCAAAAATTGGTGGCTATGTGTCATTCTTCAACGAGTGCAGGCCACTGTCTGTTAGCATGGGAAATTCAATTAGGTTTCTGAAGAACCGCATTGCCAAATTACCAGTGAATCTTCTGGAATCTGAAGTAAAAGCTACACTTTGCTCAGATATTGATCGCTTTATCAATGAGAAGATTATCATTGCAGATGAGGTCATAGTTAGACATGCTGCTACTAAAATCAGGGATGGAGATGTTCTTCTCACATATGGATCATCATGTGCTGTAGAGATGCTTCTATTATATGCACATGAACTCGGAAAAGAATTCCGTGTTGTGGTGGTGGATTCCCGACCAAAACTGGAAGGGCAAGCATTGCTTCGTAGGCTAATAGCAAGCGGCCTAAAGTGTACCTACACTCATATAAATGCTATTTCTTACGTGATGCACGAAGTAACACGAGTTTTTCTGGGGGCTGCTGCAGTATTGTCTAATGGAACTGTATATTCTAGAGTGGGAACTGCAGGTGTTGCCATGGTTGCTAATGCATTCCATGTGCCAGTCTTAATCTGCTGCGAAGCCTATAAATTTCATGAAAGGGTACAGCTTGACTCAATATGTTTCAATGAATTAGTCGCATACCTATACTCTTATCAGGTTGGTTTACAATATATGGCCGGAGATATATGTGGAGGCAATGCTCGCTGTATTGCTATGCTTCATGCCTTTCAACAGGCCATCAAAGACTACTCAACTCCGCCACAGAAATCTCTGGGTAGAGATTTAACTGCAAAAATTGGTGGCTATGTGTCATTCTTCAACGAGTGCAGGCCACTGTCTGTTAGCATGGGAAATTCAATTAGGTTTCTGAAGAACCGCATTGCCAAATTACCAGTGAATCTTCTGGAATCTGAAGTAAAAGCTACACTTTGCTCAGATATTGATCGCTTTATCAATGAGAAGATTATCATTGCAGATGAGGTCATAGTTAGACATGCTGCTACTAAAATCAGGGATGGAGATGTTCTTCTCACATATGGATCATCATGTGCTGTAGAGATGCTTCTATTATATGCACATGAACTCGGAAAAGAATTCCGTGTTGTGGTGGTGGATTCCCGACCAAAACTGGAAGGGCAAGCATTGCTTCGTAGGCTAATAGCAAGCGGCCTAAAGTGTACCTACACTCATATAAATGCTATTTCTTACGTGATGCACGAAGTAACACGAGTTTTTCTGGGGGCTGCTGCAGTATTGTCTAATGGAACTGTATATTCTAGAGTGGGAACTGCAGGTGTTGCCATGGTTGCTAATGCATTCCATGTGCCAGTCTTAATCTGCTGCGAAGCCTATAAATTTCATGAAAGGGTACAGCTTGACTCAATATGTTTCAATGAATTAGGTGATCCAGATGCTATCTCAAAGGTCCCAGGAAGGAAGGATGTTAATTATCTAGATAATTTGACTGCTAAAGAACAACTGCAATGTCTAAATTTAATGTATGATGCTACACCTTCAGATTATGTCTCAATGATTGTCACAGATTATGGCATGGTGGTCAAGCATCTAGATCCCGCCTACAAGTGTACCCGTGATCGTACGCGAGTATCGGAGAGAGCACCTGTGGATTTAAGGACTTCATTTGTAAGGAAGCTTATTTTTGCAAGGATGAATCATAGATGTTTGTTGCCGAAGCATGCTGCCAGAAGTTTTTACATTCAAAATCTGCAACTATATTTTAATTTTTAG 2850 44.49 MDARRGSRVVKPKVRQVGFFTLDAPNPPGRSLSGPVGFGSSQQSLSPPTDPLSPVMIPPPRHLSDNFASRSTILPVPTPANWRNSGDQIHVGSYNPSQTLLATSPSSRIWDDELEMSEDSSTSVPYRRSGSGKIASSLPGLGVHMAAKSSENSQAVPLRTLGPNKPSGVAENNGGVPTEVQNQPPPSSSKSLKAKTTKAERRALQEAQRAAKVSAKGETNKSGTAPGKTVKQPSAMKDSTAAPSVASTDKRGGDRTLDKERKKDAPHPRMQFDDKNRVEKAKKRAVFNQTEARNRVELFRHLPQYEQGTQLPDLVSKFFQLDTIHPAIYKVGLQYMAGDICGGNARCIAMLHAFQQAIKDYSTPPQKSLGRDLTAKIGGYVSFFNECRPLSVSMGNSIRFLKNRIAKLPVNLLESEVKATLCSDIDRFINEKIIIADEVIVRHAATKIRDGDVLLTYGSSCAVEMLLLYAHELGKEFRVVVVDSRPKLEGQALLRRLIASGLKCTYTHINAISYVMHEVTRVFLGAAAVLSNGTVYSRVGTAGVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELVAYLYSYQVGLQYMAGDICGGNARCIAMLHAFQQAIKDYSTPPQKSLGRDLTAKIGGYVSFFNECRPLSVSMGNSIRFLKNRIAKLPVNLLESEVKATLCSDIDRFINEKIIIADEVIVRHAATKIRDGDVLLTYGSSCAVEMLLLYAHELGKEFRVVVVDSRPKLEGQALLRRLIASGLKCTYTHINAISYVMHEVTRVFLGAAAVLSNGTVYSRVGTAGVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELGDPDAISKVPGRKDVNYLDNLTAKEQLQCLNLMYDATPSDYVSMIVTDYGMVVKHLDPAYKCTRDRTRVSERAPVDLRTSFVRKLIFARMNHRCLLPKHAARSFYIQNLQLYFNF 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1252220 1259014 + CmaCh11G002470.1 Cma11g00247 302756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00247 949 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 585 886 - -
Cma11g00247 949 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 1 578 - -
Cma11g00247 949 Gene3D - 435 581 IPR042529 -
Cma11g00247 949 Gene3D - 691 890 IPR042529 -
Cma11g00247 949 MobiDBLite consensus disorder prediction 20 66 - -
Cma11g00247 949 MobiDBLite consensus disorder prediction 215 246 - -
Cma11g00247 949 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 1 578 - -
Cma11g00247 949 Pfam Initiation factor 2 subunit family 341 579 IPR000649 GO:0044237
Cma11g00247 949 Pfam Initiation factor 2 subunit family 597 886 IPR000649 GO:0044237
Cma11g00247 949 MobiDBLite consensus disorder prediction 78 106 - -
Cma11g00247 949 MobiDBLite consensus disorder prediction 251 279 - -
Cma11g00247 949 SUPERFAMILY NagB/RpiA/CoA transferase-like 596 888 IPR037171 -
Cma11g00247 949 SUPERFAMILY NagB/RpiA/CoA transferase-like 295 578 IPR037171 -
Cma11g00247 949 MobiDBLite consensus disorder prediction 35 50 - -
Cma11g00247 949 MobiDBLite consensus disorder prediction 174 193 - -
Cma11g00247 949 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 585 886 - -
Cma11g00247 949 MobiDBLite consensus disorder prediction 78 279 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00830 Cma-Chr8:5028613 Cma11g00247 Cma-Chr11:1252220 2.44E-11 dispersed
Cma10g00256 Cma-Chr10:1139004 Cma11g00247 Cma-Chr11:1252220 0 dispersed
Cma11g00247 Cma-Chr11:1252220 Cma15g00822 Cma-Chr15:4132604 5.62E-08 dispersed
Cma11g00245 Cma-Chr11:1244761 Cma11g00247 Cma-Chr11:1252220 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00247 K03680 - csv:101215104 978.778