Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00251 ATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCTAAGGCGACTATGACTAAAATTATCAAAGAGATGTTGCCCCCTGATGTTCGTGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTGTCGTCGGAGTCCAATGAAGTTTGTAGCAAAGAAGATAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAGTACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGAAAACTCTCCAGCAAGACTCGTTGAAAGGTGGAAAGTGGAGTAATGGAGCCGAGATGACTGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAGGCACGTGCAAGAATGAATGGCAGTAACACCGCTCCGAAGCAACTGGAGCCTGAGCAAAGTTTAGAGAGCTAA 483 44.93 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMKTLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQLEPEQSLES 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1269086 1272417 - CmaCh11G002510.1 Cma11g00251 302760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00251 160 PANTHER PROTEIN DR1 HOMOLOG 1 159 IPR044255 -
Cma11g00251 160 SUPERFAMILY Histone-fold 12 146 IPR009072 GO:0046982
Cma11g00251 160 MobiDBLite consensus disorder prediction 139 160 - -
Cma11g00251 160 MobiDBLite consensus disorder prediction 144 160 - -
Cma11g00251 160 Gene3D Histone, subunit A 4 149 IPR009072 GO:0046982
Cma11g00251 160 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00251 K21751 DR1, NC2-beta; down-regulator of transcription 1 - csv:101214627 295.819
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00251 Cma-Chr11:1269086 Cma04g01239 Cma-Chr4:6346452 4.97E-19 dispersed
Cma10g00260 Cma-Chr10:1156363 Cma11g00251 Cma-Chr11:1269086 4.81E-112 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma10g00260 . 19 171 CCAAT-DR1 Transcription Factor Family AT5G08190 82.4 2.1e-63 239.2
Cma11g00251 . 1 156 CCAAT-DR1 Transcription Factor Family AT5G08190 81.4 2.1e-63 239.2
Cma10g00260 . 19 173 CCAAT-DR1 Transcription Factor Family AT5G23090 81.3 2.9e-65 245.4
Cma11g00251 . 1 155 CCAAT-DR1 Transcription Factor Family AT5G23090 81.9 3.7e-65 245.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004258 4 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 0 3 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35794 PF00808 CBFD_NFYB_HMF 3.20E-22 CL0012 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00251 Cma_Chr11 FPKM 55.426949 57.563316 49.882015 45.750401 71.774986 71.079788 71.180664 102.308792 110.209251 100.429565