Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00251 ATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCTAAGGCGACTATGACTAAAATTATCAAAGAGATGTTGCCCCCTGATGTTCGTGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTGTCGTCGGAGTCCAATGAAGTTTGTAGCAAAGAAGATAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAGTACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGAAAACTCTCCAGCAAGACTCGTTGAAAGGTGGAAAGTGGAGTAATGGAGCCGAGATGACTGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAGGCACGTGCAAGAATGAATGGCAGTAACACCGCTCCGAAGCAACTGGAGCCTGAGCAAAGTTTAGAGAGCTAA 483 44.93 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMKTLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQLEPEQSLES 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1269086 1272417 - CmaCh11G002510.1 Cma11g00251 302760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00251 160 PANTHER PROTEIN DR1 HOMOLOG 1 159 IPR044255 -
Cma11g00251 160 SUPERFAMILY Histone-fold 12 146 IPR009072 GO:0046982
Cma11g00251 160 MobiDBLite consensus disorder prediction 139 160 - -
Cma11g00251 160 MobiDBLite consensus disorder prediction 144 160 - -
Cma11g00251 160 Gene3D Histone, subunit A 4 149 IPR009072 GO:0046982
Cma11g00251 160 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00251 Cma-Chr11:1269086 Cma04g01239 Cma-Chr4:6346452 4.97E-19 dispersed
Cma10g00260 Cma-Chr10:1156363 Cma11g00251 Cma-Chr11:1269086 4.81E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35794 PF00808 CBFD_NFYB_HMF 3.20E-22 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00251 K21751 - csv:101214627 295.819