Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00251 | ATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCTAAGGCGACTATGACTAAAATTATCAAAGAGATGTTGCCCCCTGATGTTCGTGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTGTCGTCGGAGTCCAATGAAGTTTGTAGCAAAGAAGATAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAGTACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGAAAACTCTCCAGCAAGACTCGTTGAAAGGTGGAAAGTGGAGTAATGGAGCCGAGATGACTGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAGGCACGTGCAAGAATGAATGGCAGTAACACCGCTCCGAAGCAACTGGAGCCTGAGCAAAGTTTAGAGAGCTAA | 483 | 44.93 | MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMKTLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQLEPEQSLES | 160 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1269086 | 1272417 | - | CmaCh11G002510.1 | Cma11g00251 | 302760 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00251 | 160 | PANTHER | PROTEIN DR1 HOMOLOG | 1 | 159 | IPR044255 | - | |
Cma11g00251 | 160 | SUPERFAMILY | Histone-fold | 12 | 146 | IPR009072 | GO:0046982 | |
Cma11g00251 | 160 | MobiDBLite | consensus disorder prediction | 139 | 160 | - | - | |
Cma11g00251 | 160 | MobiDBLite | consensus disorder prediction | 144 | 160 | - | - | |
Cma11g00251 | 160 | Gene3D | Histone, subunit A | 4 | 149 | IPR009072 | GO:0046982 | |
Cma11g00251 | 160 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 14 | 79 | IPR003958 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g00251 | Cma-Chr11:1269086 | Cma04g01239 | Cma-Chr4:6346452 | 4.97E-19 | dispersed | |
Cma10g00260 | Cma-Chr10:1156363 | Cma11g00251 | Cma-Chr11:1269086 | 4.81E-112 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35794 | PF00808 | CBFD_NFYB_HMF | 3.20E-22 | CL0012 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00251 | K21751 | - | csv:101214627 | 295.819 |