Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00257 ATGACTTGGAGGAGAGTGTTGAAGTCCGTGCAGGCACTTTTGGCCCACGGTTCACTCTTCTGTTTCACGCTCTTGCTCGTTCTCAAGCTCGATCATTTCGTCTCCCACAGTTGGTGGGTTATTTTTTTCCCACTTTGGGTATTTCATGTCGTTGTTGCTCGGGGAAGGTTCTCATTACCTGCCCCATCTCTTCCTCATAATCGCCATTGGGCACCGTGCCATGCCGTTGTCTCCACGCCTTTGCTTGTAACATTTGAATTACTTCTTTGTATATACCTCGAGAGCCTGTCTGTTTATGGTTTTCCTGCTGTGAATTTGAAGATTGTCTTTCTACCGTTGCTGGCTTTTGAAATCATCATTTTAATAGATAATTTCAGAATGTGTAGATCACTAATGCCTGGTGACGACGAAAGCATGAGCGATGAGGCAATATGGGAAACTCTTCCTCACTTTTGGGTTGCTATTTCAATGGTCTTCTTCGTTGCTGCTACAGTGTTTACTCTACTGAAGCTATGTGGGAGTGTTGGTGCTCTTGGCTGGTGGGACTTATTTATTAACTTTGGCATTGCGGAGTGCTTTGCGTTTCTCGTCTGTACAAAGTGGTCTAATCCTGTAATTCATAGAAATATTCAAACAAGAGAAACTTGTTCATCATCAGCCGTAGTTAGATATCTAGATTGGAACAACGGTCTGATGGTTTATCCAGAGCAGGATCAGCATCAAGACAGAATGTGTGGCCTTCAAGACATTGGCGGCCATATCATGAAAATTCCCATAATTGTTTTTCAAGTCCTACTTTGCATGTATTTAGAGGGAACACCTGCGAGCGCAAAACATATACCACTTCCTGTCCTTTTCTCGCCCCTTTTTATACTGCAAGGTGCTGCTGTTATTTATGCTGCATCTAGATTGTTAGAGAAAGTTATACTTCTCTTAAGAGGTGGATCAGGCACCGCCCCGCATCTCAGTTTTTCTGCTAGAGCTCATGCCTTCTTGGAGTTCTTTCATCATGGTTCGAGGCTATTGGGATGGTGGTCAATTGATGAAGGCAGTAGAGAGGAGCAGGCACGACTGTACCATGAGGGTGCCTCAGGGTACAATACGTTTAGTGGATATCCTCCCGAGATTGTGAAGAAGATGCCCAAGAAAGATCTTGCCGAGGAGGTCTGGCGCCTTCAAGCTGCATTAGGGGAGCAAACAGAAATCACCAAATACAGTCAGCAGGAATATGAAAGACTTCAAAATGAAAAGGTGTTATGTCGGGTTTGTTTTGAGGGGGAAATTAGCGTGGTTCTTCTTCCATGTAGGCATCGTGTACTATGCAGTACCTGCTGTGAGAAGTGTAAAAAGTGCCCAATTTGTCGTGTCTGTATCGAAGAACGATTAGCGGTATACGATGTTTAG 1404 44.23 MTWRRVLKSVQALLAHGSLFCFTLLLVLKLDHFVSHSWWVIFFPLWVFHVVVARGRFSLPAPSLPHNRHWAPCHAVVSTPLLVTFELLLCIYLESLSVYGFPAVNLKIVFLPLLAFEIIILIDNFRMCRSLMPGDDESMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLCGSVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRNIQTRETCSSSAVVRYLDWNNGLMVYPEQDQHQDRMCGLQDIGGHIMKIPIIVFQVLLCMYLEGTPASAKHIPLPVLFSPLFILQGAAVIYAASRLLEKVILLLRGGSGTAPHLSFSARAHAFLEFFHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRVLCSTCCEKCKKCPICRVCIEERLAVYDV 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1304803 1310581 + CmaCh11G002570.1 Cma11g00257 302766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00257 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 467 - -
Cma11g00257 467 Pfam Zinc finger, C3HC4 type (RING finger) 417 460 - -
Cma11g00257 467 Pfam Transmembrane Fragile-X-F protein 28 292 IPR019396 -
Cma11g00257 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 466 IPR013083 -
Cma11g00257 467 SUPERFAMILY RING/U-box 411 461 - -
Cma11g00257 467 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 467 - -
Cma11g00257 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00248 Cma11g00257 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00257 Cma-Chr11:1304803 Cma16g01147 Cma-Chr16:8819354 9.54E-09 dispersed
Cma04g02006 Cma-Chr4:12411883 Cma11g00257 Cma-Chr11:1304803 0 transposed
Cma10g00248 Cma-Chr10:1102128 Cma11g00257 Cma-Chr11:1304803 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00257 - - csv:101215825 901.738