Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00259 ATGAGCCGATCCCCTTCATTTTCTGTGAAGTCAGAAGTTAATGTGAAGTTGGATCCAGAATCTCTCCAAAAATGGGTTGTGGCCTTTTGCATTATTAGGTTTGATCTTGAACAGGGTCAACTCATTGAGGAGTGCTACCCTCCAGGCGTTCTTACACAAGATGAGGAACTTGAAGTTGCATTTAGTTCATTTCCCGATTCGATTTCGCAGCATCAGAACCGGTCAAGTATACATGATTGTATATTCTTTTTCCGGGTTCGAAGGAAGGAAATTTCTCAACCAAGAAATGTTTCTTCTTCTGAGATAACTGAAATGGATGACTCGAAACTTCCAAGATCGAAAAGCAGCCTTGCTAACAAGTCCAAGTTCATGTATGGTTTTGTTTTTAATAGGCAGAGACATGATGAGAGGCTAAGAAGAGGTGGAGAGCAGAAGTCTGTGGTTATTTTATCTCATAGTCCTTATTCTACTGTCTTCAAACCTCTGTTGCAAATCATGGGTCCATTATATTTCGACATCGGGAGTAGGGCTCTTGAGCATATTGCTGCTTGTGTTTCAATGTGGCCTGCTCCTATAACTGGTAAACAAATGGAGCTTCCTATTGGAAATGCTCTGCTTAAAGCACACTTGCCACCTGCTCATAGTTTGCCAATGGATGGCGAGACGTTTTCGAAAGAGTCTACATCCTCTATGGCTCCTTTTCTTCCTAATAATCAGTCTGTTCCGCAGGGTCTTTTCCACGATTCCGATCTCTTTGGTACATTCCGGGGTCTTCTTCTGCAGCTCTGGCTGTTGTGGGAGTTGCAACTTATTGGTGAACCCATCCTAATCATTGCACCGACGCCTCCCCAGTGTTGTGAAGCTGTTGCTGGTCTTGTTAGTTTGGTTGCTCCTCTTCTTTGTAGTGTTGATTTTAGACCTTATTTCACCATTCATGACCCTGAGTTTTCATACTTAAACACACTTCAAGAGGGAGCTACTTTCCCCCCTATGGTTTTGGGGGTGACAAACCTCTTCTTCCTTAAAGCCCTTCGTAGTATTCCTCATATTGTCTCAGTTGGAAACTCTACTGCGAATCGGCTTCCCCAGACATCCAGGTCCTCTTCTGGCAGTGTTTCTGGTACTCCTGAAGGGTTCGGATTTCGGCAGCTGTCCTTGAAAAAATTCTCTCCGACAAACTTACTAAATGCTGTGAAGTTGAGGAGAGATGGTCCTCTAAGCCTCATGACAGAACATAAGGAAGCCATCTGGAGCACTTATCCTGCAGCAATGAAGCCAGACACATCGATCTTGAATCGGCTTATTGACGCTGGCTTATCACCGAGGGTTGAGGAGTCCATGTCTGTTGTTAACAATGAGATTTTGCGTCGACACTTCCTGGAACTTACGACCAACTTTTTGGCTCCTTTTGGGCCATACTTTCGAACCACCACACCTTCAGAAGGATCTTCTCCATTTGATGAGCCTTCTCGCCCTCAATTTAGTGCTGATGAGTTTCTTGCCAATCTATCAACAAGAGGACCAGGAAAATTTCTGGCCAAGCGAATGAGATCTAACTGGCTGGACTTGTACAGGCGGTTTCTCAAAGGACCAAACTTTATGCCTTGGTTTGAAAGAAGGCGTGCGGTTGCCGAACAAGAACAGCATAGACTATGGAGGCAAGCAAGAATCAATGCCGATGTACCACGGCTTATATCTAAAATGCCCGAGTTGGAAGTTGTCGACTTATTTAACGCTATTGAAAGACATCTTCTAAGAGAAATGGAGCTGCAGGAATCCAGAAGGGCTTATGTAGACTCTGTGACAATTTGCCAGAAACTGAAAGGCGATCTGCTGACTGTTTTTAATGTGCTTCCTAAGGACATGCAACAGCTTTTGCTTCTTAATCCACAAAGAGCATCGCTTCTCCGAGGAAGTCCCGAAGTAACGAAACTTCCAGGGCGCCCGCTTGTACAAGTTGGTGTTATATCACCAAGATAG 1980 44.39 MSRSPSFSVKSEVNVKLDPESLQKWVVAFCIIRFDLEQGQLIEECYPPGVLTQDEELEVAFSSFPDSISQHQNRSSIHDCIFFFRVRRKEISQPRNVSSSEITEMDDSKLPRSKSSLANKSKFMYGFVFNRQRHDERLRRGGEQKSVVILSHSPYSTVFKPLLQIMGPLYFDIGSRALEHIAACVSMWPAPITGKQMELPIGNALLKAHLPPAHSLPMDGETFSKESTSSMAPFLPNNQSVPQGLFHDSDLFGTFRGLLLQLWLLWELQLIGEPILIIAPTPPQCCEAVAGLVSLVAPLLCSVDFRPYFTIHDPEFSYLNTLQEGATFPPMVLGVTNLFFLKALRSIPHIVSVGNSTANRLPQTSRSSSGSVSGTPEGFGFRQLSLKKFSPTNLLNAVKLRRDGPLSLMTEHKEAIWSTYPAAMKPDTSILNRLIDAGLSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRTTTPSEGSSPFDEPSRPQFSADEFLANLSTRGPGKFLAKRMRSNWLDLYRRFLKGPNFMPWFERRRAVAEQEQHRLWRQARINADVPRLISKMPELEVVDLFNAIERHLLREMELQESRRAYVDSVTICQKLKGDLLTVFNVLPKDMQQLLLLNPQRASLLRGSPEVTKLPGRPLVQVGVISPR 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1312485 1316348 + CmaCh11G002590.1 Cma11g00259 302768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00259 659 PANTHER UNCHARACTERIZED 1 632 IPR024224 GO:0005085
Cma11g00259 659 ProSiteProfiles Tripartite DENN domain profile. 27 538 IPR037516 -
Cma11g00259 659 PANTHER LD41638P 1 632 - -
Cma11g00259 659 Pfam Stabilization of polarity axis 254 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00259 - - - csv:101216067 1215.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00247 Cma11g00259 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00247 Cma-Chr10:1096663 Cma11g00259 Cma-Chr11:1312485 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g361 . . Bda06g00489 Bda15g00657 . . . Bma12g00939 . . Cma10g00247 Cma11g00259 Car10g00234 Car11g00237 . . Cpe04g01415 . . . . . . . Cla06g01483 Cam06g1638 . Cco06g1696 Clacu06g1604 Cmu06g1553 . . . Cone13ag0298 Cone19ag0267 . . . . . Blo15g00367 . . Bpe07g00729 . . . . Cmo10g00267 Cmo11g00265 . . . . . Cpe18g00745 . . . . . . . . . . . . . . . Csa01g00365 . Cme02g01763
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006560 1 1 1 2 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00259 Cma_Chr11 FPKM 6.922474 8.99839 7.427612 7.345221 9.814481 10.076882 10.984097 6.366607 6.057047 7.458537