Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00267 ATGCGTCTCAGCTGTAATGGATGCCGAGTTCTTCGCAAAGGCTGCAGTGAAAGCTGCTCCATCAGGCCTTGTCTTCAATGGATCAAAACCCCCCAATCCCAAGCCAATGCCACCTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTCCTTAACCTCATCAATGCCGGCCCCGATCACCTCCGCCCTGCGATTTTTAAATCTTTGCTATTCGAGGCGTGTGGGCGGATTGTGAACCCGATTTATGGGTCGGCCGGACTGTTGTGGTCCGGGAGCTGGCAGCTCTGTCAGGACGCCGTCGAAGCCGTTCTCAAAGGTGCACCGATTCTGCCTGTTTCTTCCGAGTCTGCGGCGTCGCACATGGGCCCACCGTTGAAGGGCTGCGACATCCGCCACGTTTCGAGACAACAAGGCTCCGCCCCTGATTCCGCGCTCCAGAAGATCAAAACGCGACGGCGGCTCAAGCGATCAGCGCCCAACAAGCCGATGCCGAAGGAGGAGCCGGTGGTGGTAACCGAGTTCGCATTCGACGACCCGACCCGAATTGTCTCGGAGCCCCGGTGTTTGATGTTCGAGCTGGATAGTTGGGTGGGCCATAAATCGCAGGAGAAGGACGGCAGCAGTGGCAGCAGCGACGAGGCCGAGTGTTTGTCGGTGGAGGGTTCTGCAGTTGAGCAGGTTGGTGACGTGGAGTTAGAACTTAGCTTGGGGTTATAG 717 57.88 MRLSCNGCRVLRKGCSESCSIRPCLQWIKTPQSQANATFFLAKFYGRAGLLNLINAGPDHLRPAIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSESAASHMGPPLKGCDIRHVSRQQGSAPDSALQKIKTRRRLKRSAPNKPMPKEEPVVVTEFAFDDPTRIVSEPRCLMFELDSWVGHKSQEKDGSSGSSDEAECLSVEGSAVEQVGDVELELSLGL 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1358315 1359522 - CmaCh11G002670.1 Cma11g00267 302776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00267 238 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Cma11g00267 238 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cma11g00267 238 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 214 - -
Cma11g00267 238 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 214 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00235 Cma11g00267 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00384 Cma-Chr1:1921974 Cma11g00267 Cma-Chr11:1358315 1.70E-86 dispersed
Cma11g00267 Cma-Chr11:1358315 Cma14g00811 Cma-Chr14:4107612 3.38E-88 dispersed
Cma10g00235 Cma-Chr10:1053099 Cma11g00267 Cma-Chr11:1358315 6.02E-125 wgd
Cma11g00267 Cma-Chr11:1358315 Cma18g01019 Cma-Chr18:8518054 6.52E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35797 PF03195 LOB 1.00E-22 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00267 - - csv:101219232 386.341