Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00267 | ATGCGTCTCAGCTGTAATGGATGCCGAGTTCTTCGCAAAGGCTGCAGTGAAAGCTGCTCCATCAGGCCTTGTCTTCAATGGATCAAAACCCCCCAATCCCAAGCCAATGCCACCTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTCCTTAACCTCATCAATGCCGGCCCCGATCACCTCCGCCCTGCGATTTTTAAATCTTTGCTATTCGAGGCGTGTGGGCGGATTGTGAACCCGATTTATGGGTCGGCCGGACTGTTGTGGTCCGGGAGCTGGCAGCTCTGTCAGGACGCCGTCGAAGCCGTTCTCAAAGGTGCACCGATTCTGCCTGTTTCTTCCGAGTCTGCGGCGTCGCACATGGGCCCACCGTTGAAGGGCTGCGACATCCGCCACGTTTCGAGACAACAAGGCTCCGCCCCTGATTCCGCGCTCCAGAAGATCAAAACGCGACGGCGGCTCAAGCGATCAGCGCCCAACAAGCCGATGCCGAAGGAGGAGCCGGTGGTGGTAACCGAGTTCGCATTCGACGACCCGACCCGAATTGTCTCGGAGCCCCGGTGTTTGATGTTCGAGCTGGATAGTTGGGTGGGCCATAAATCGCAGGAGAAGGACGGCAGCAGTGGCAGCAGCGACGAGGCCGAGTGTTTGTCGGTGGAGGGTTCTGCAGTTGAGCAGGTTGGTGACGTGGAGTTAGAACTTAGCTTGGGGTTATAG | 717 | 57.88 | MRLSCNGCRVLRKGCSESCSIRPCLQWIKTPQSQANATFFLAKFYGRAGLLNLINAGPDHLRPAIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSESAASHMGPPLKGCDIRHVSRQQGSAPDSALQKIKTRRRLKRSAPNKPMPKEEPVVVTEFAFDDPTRIVSEPRCLMFELDSWVGHKSQEKDGSSGSSDEAECLSVEGSAVEQVGDVELELSLGL | 238 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1358315 | 1359522 | - | CmaCh11G002670.1 | Cma11g00267 | 302776 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00267 | 238 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 102 | IPR004883 | - | |
Cma11g00267 | 238 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - | |
Cma11g00267 | 238 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 40 | 1 | 214 | - | - | |
Cma11g00267 | 238 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 214 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00235 | Cma11g00267 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00384 | Cma-Chr1:1921974 | Cma11g00267 | Cma-Chr11:1358315 | 1.70E-86 | dispersed | |
Cma11g00267 | Cma-Chr11:1358315 | Cma14g00811 | Cma-Chr14:4107612 | 3.38E-88 | dispersed | |
Cma10g00235 | Cma-Chr10:1053099 | Cma11g00267 | Cma-Chr11:1358315 | 6.02E-125 | wgd | |
Cma11g00267 | Cma-Chr11:1358315 | Cma18g01019 | Cma-Chr18:8518054 | 6.52E-66 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35797 | PF03195 | LOB | 1.00E-22 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00267 | - | - | csv:101219232 | 386.341 |