Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00268 ATGGTGATCTTTGAACTGCTAGGAGGAATATCTGAGAGAATGAACAAGTGGGTTTATGAGCAGAATGCCATGGCTGCCTGCCAAGAGATGAGGATGGAATCTGTGGTTTGTCCAAAGCCACGTCGTTTGGTTCTGCAAACTCCATATGATAATGACCCCATCAGAGCTCATAGATGGCCCATCAGCCACACCAAGACAGGAAATTCAAAAGCAGGAGCCGAGCTTCTGGATATGATCCTCACTAAGGAAAGTTATGGTGAAACATATAGCCAGCAATTAGGAACATCTCCACCGTTCTTTTGGGGGTCTCCACCGAGCAGGGCATCCAACCCTCTAGTCCAAGATGAGCAATTTGGCAATAGAAACAATATGTACCAAGCCAGTGAAGGGCCACCATCTCCCTCAACCCGTAAAGGAGGTTGTGCCCGAATGAAATTCGGTCATCGACCTGCAGCAGTTCGAATCGAAGGATTCGACTGTCTGAATCGAGATGCTCGAAATTGCAGCATTTCTGCTGTGGCTTAA 525 47.43 MVIFELLGGISERMNKWVYEQNAMAACQEMRMESVVCPKPRRLVLQTPYDNDPIRAHRWPISHTKTGNSKAGAELLDMILTKESYGETYSQQLGTSPPFFWGSPPSRASNPLVQDEQFGNRNNMYQASEGPPSPSTRKGGCARMKFGHRPAAVRIEGFDCLNRDARNCSISAVA 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1360435 1362530 - CmaCh11G002680.1 Cma11g00268 302777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00268 174 PANTHER EXPRESSED PROTEIN 14 174 - -
Cma11g00268 174 PANTHER - 14 174 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00268 - - - csv:101219468 295.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02046 Cma-Chr4:13391570 Cma11g00268 Cma-Chr11:1360435 4.18E-28 dispersed
Cma11g00268 Cma-Chr11:1360435 Cma14g00813 Cma-Chr14:4112871 3.03E-26 dispersed
Cma11g00268 Cma-Chr11:1360435 Cma18g01017 Cma-Chr18:8502049 3.47E-33 wgd
Cma11g00268 Cma-Chr11:1360435 Cma04g01504 Cma-Chr4:7641027 7.83E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g323 . . . . . . . . . . . Cma11g00268 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00382 Chy02g02364 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011962 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 5 1 0 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00268 Cma_Chr11 FPKM 182.579742 190.834763 352.760651 346.596893 222.605896 193.701965 235.604736 1012.365906 1058.841309 1039.203125