Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00271 ATGGCTTTCGCAACTGCCAAACTATCGGAATTGCCATTGAAGAACTCACTTCCACTGTCCTCTCACTCGCGTACGCTTCTCTCAAACCCGAATTTTTCTTTTCAGATTCCAAGAACATTTTCTTCTCTCAGAACTCCCACTGAGCATAGCGGCAAGAGAAACCCTAAAACCTCGCAGAAGTCTGGACCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGGGTTTCCAGGTGGCCTTCTGGGAGCTCTCGGAATGATCGGAAAGTTGAGAAGAAGGTAGCCGATACGACACGAGATGATCGAACCGATCGAGCACAGAATCAGACGGAGTACTTGGATAAGAACAAAGGGCAGAGTTCAATTGAGCGAATTGTTCTTCGCTTACGAAATTTAGGGATAGGATCAGATGATGAGGAGGAGAAGGAGGAGGATGAAGAGGATAATGAATTGGATTCTCTCGAGGCAATGCTGGTGACTGGGAAGGAAAAACTGGGGGATTTACTTCAACGTGAATGGATTCGACCGGATGGCACATTGGATTCGAATATGGATGGGGAGGATGATATGGTTTTACCATGGGAGAGAGAGGAGGACAGGGGGGAAGAGGTGGAGGGTGGAAGCGGGTTGAAAAGGAGAAAGATGAAGGCTCCGACGTTAGCTGAATTGACAATTGAAGATGAGGAGCTGAGGCGGCTGAGGAGAATGGGGATGTTTATTAAAGAGCGGATTAATATACCGAAAGCAGGGATTACACAGGCAGTGCTGGAGAAGATTCATTTGAAATGGAGGAAGGAGGAGTTGGTGAGGCTTAAGTTCCATGAGGAGCTTGCACATGATATGAAGACAGCGCACGAGATTGTAGAGCGACGAACTGGAGGATTGGTTCTTTGGAGGTCTGGAAGTGTTATGGTAGTTTACCGTGGTAGTAACTATGAAGGGCCATCTAAAACTAAACCCCCTGCAACGGAGGGGGATGCGGTATTCATCCCGGATGTTTCTTCTGCTGCCACTTCGACAACAAGTGGCAATGTTGCCGTTTCAGCTCCGGAGAAGGCTAAGTTGCCTATTGGGGCACCGAAGTCTAATGAGGCCATGTCGGAGGAAGAGGCTGAATACAACCAACTAATAGGTGGTTTAGGTCCTCGTTTTGTTGAATGGTGGGGCACAGGAGTTCTTCCTATTGATGCTGATCAGCTTCCTCCTACTGTTCCCGGTTACAAAACACCGTTCAGGCTTCTCCCAACAGGAATGCGGTCCCGACTGACCAATGCAGAGATGACTCAAATGAGGAAACTTGCAAAATCCCTACCATGTCATTTTGCCCTTGGGAGAAACAGGAACCATCAGGGCTTGGCAGTTGCTATACTTAAACTTTGGGAAAAGAGCCTAGTAGCTAAAATTGCTGTTAAAAGAGGTATACAGAATACCAATAATAAACTCATGGCTGAGGAGATAAAGAACTTAACAGGAGGTGTGCTACTGTTGAGAAATAAATATTTTATCGTCATATACCGTGGGAAGGATTTTCTCCCAACAAGTGTAGCCACAGCTTTGGCAGAAAGGCAGGAATTAACGAAACACATTCAAGATGTGGAAGAGAAAACTCGAAGTAAAGTGGTCGAAGCAACTTCATCGAGCACTGATGGACAGGCACCTGCAGGTACTTTGGCTGAATTCTATGAGGCTCAGTCCCGATGGGGAAGGGAAATATCTGCGGAAGACCGTGAAAGAATGATTGAAGAAAGCTCCAGAGCAAAAACTGAAAGACTTATCAGACGAATCGAACATAAGCTTGGTGTTGCCCAAGCAAAGAAACTTAGAGCAGAAAAGTTGTTATCTAAAATTGAAGCGTCCATGATCCTCTCTAGCCCTGATGATGACCAAGAAACAATAACAGAAGAGGAACGGGTCATGTTTCGGAGGGTTGGGTTACGAATGACCGCTTATTTACCTATAGGCATTCGCGGTGTCTTTGATGGTGTTGTTGAAAATATGCATTTACATTGGAAGCATAGGGAACTTGTGAAGTTGATTAGCAAGCAAAAGACACTTGCTTTTGTGGAAGAAACGGCAAGGTTGTTAGCGTATGAGAGCGGCGGAATACTAGTTTCAATAGATAGAGTTCCAAAAGGATATGCCCTTATTTACTATCGAGGAAAGAATTATCGTCGACCCATCGCCTTGAGGCCAAGAAACTTGCTTACAAAGGCAAAAGCATTAAAGCGTTCGGTGGCCATGCAGCGTCATGAGGCTCTCAGTCAGCATATATCTGAACTCGAGAAGAACATAGAGCAAATGAAGAAAGACATTGGCATCACCGAAGATTCAGAGGACGAGAGGAACGGGTCGTCTCAGGATGGACCTGTCTCAGAGTCTTTCCAAGATGAGGAAGCATCTTTGTCCGCATTTTCGGATGATGAGAATGACGAAGATAGCGAGTACGAAGAGGATGAAGATTTTGATTTTTCCGACTCAGAAGACACTGATGATCCAGTGAACTAA 2502 45.48 MAFATAKLSELPLKNSLPLSSHSRTLLSNPNFSFQIPRTFSSLRTPTEHSGKRNPKTSQKSGPSSSSSSSSSSWVSRWPSGSSRNDRKVEKKVADTTRDDRTDRAQNQTEYLDKNKGQSSIERIVLRLRNLGIGSDDEEEKEEDEEDNELDSLEAMLVTGKEKLGDLLQREWIRPDGTLDSNMDGEDDMVLPWEREEDRGEEVEGGSGLKRRKMKAPTLAELTIEDEELRRLRRMGMFIKERINIPKAGITQAVLEKIHLKWRKEELVRLKFHEELAHDMKTAHEIVERRTGGLVLWRSGSVMVVYRGSNYEGPSKTKPPATEGDAVFIPDVSSAATSTTSGNVAVSAPEKAKLPIGAPKSNEAMSEEEAEYNQLIGGLGPRFVEWWGTGVLPIDADQLPPTVPGYKTPFRLLPTGMRSRLTNAEMTQMRKLAKSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEEIKNLTGGVLLLRNKYFIVIYRGKDFLPTSVATALAERQELTKHIQDVEEKTRSKVVEATSSSTDGQAPAGTLAEFYEAQSRWGREISAEDRERMIEESSRAKTERLIRRIEHKLGVAQAKKLRAEKLLSKIEASMILSSPDDDQETITEEERVMFRRVGLRMTAYLPIGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEETARLLAYESGGILVSIDRVPKGYALIYYRGKNYRRPIALRPRNLLTKAKALKRSVAMQRHEALSQHISELEKNIEQMKKDIGITEDSEDERNGSSQDGPVSESFQDEEASLSAFSDDENDEDSEYEEDEDFDFSDSEDTDDPVN 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1371544 1376184 - CmaCh11G002710.1 Cma11g00271 302780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00271 833 ProSiteProfiles CRM domain profile. 629 729 IPR001890 GO:0003723
Cma11g00271 833 SMART CRS1_YhbY_2 224 307 IPR001890 GO:0003723
Cma11g00271 833 SMART CRS1_YhbY_2 421 505 IPR001890 GO:0003723
Cma11g00271 833 SMART CRS1_YhbY_2 631 718 IPR001890 GO:0003723
Cma11g00271 833 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 3 828 IPR045278 GO:0000375|GO:0003729
Cma11g00271 833 MobiDBLite consensus disorder prediction 56 82 - -
Cma11g00271 833 ProSiteProfiles CRM domain profile. 222 318 IPR001890 GO:0003723
Cma11g00271 833 MobiDBLite consensus disorder prediction 800 833 - -
Cma11g00271 833 MobiDBLite consensus disorder prediction 785 799 - -
Cma11g00271 833 Pfam CRS1 / YhbY (CRM) domain 225 307 IPR001890 GO:0003723
Cma11g00271 833 Pfam CRS1 / YhbY (CRM) domain 421 505 IPR001890 GO:0003723
Cma11g00271 833 Pfam CRS1 / YhbY (CRM) domain 632 717 IPR001890 GO:0003723
Cma11g00271 833 SUPERFAMILY YhbY-like 630 728 IPR035920 -
Cma11g00271 833 MobiDBLite consensus disorder prediction 772 833 - -
Cma11g00271 833 SUPERFAMILY YhbY-like 223 316 IPR035920 -
Cma11g00271 833 Gene3D - 222 319 IPR035920 -
Cma11g00271 833 Gene3D - 630 732 IPR035920 -
Cma11g00271 833 Gene3D - 420 514 IPR035920 -
Cma11g00271 833 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 3 828 - -
Cma11g00271 833 SUPERFAMILY YhbY-like 421 512 IPR035920 -
Cma11g00271 833 Coils Coil 514 534 - -
Cma11g00271 833 ProSiteProfiles CRM domain profile. 419 516 IPR001890 GO:0003723
Cma11g00271 833 Coils Coil 136 156 - -
Cma11g00271 833 MobiDBLite consensus disorder prediction 1 117 - -
Cma11g00271 833 MobiDBLite consensus disorder prediction 14 48 - -
Cma11g00271 833 Coils Coil 749 776 - -
Cma11g00271 833 MobiDBLite consensus disorder prediction 83 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00271 - - - cmo:103494127 1326.23
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00232 Cma11g00271 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00271 Cma-Chr11:1371544 Cma14g00561 Cma-Chr14:2809474 1.64E-28 dispersed
Cma04g01743 Cma-Chr4:8755420 Cma11g00271 Cma-Chr11:1371544 6.12E-08 transposed
Cma05g01356 Cma-Chr5:10210472 Cma11g00271 Cma-Chr11:1371544 4.41E-07 transposed
Cma10g00727 Cma-Chr10:3299632 Cma11g00271 Cma-Chr11:1371544 5.73E-173 transposed
Cma14g00627 Cma-Chr14:3103247 Cma11g00271 Cma-Chr11:1371544 4.20E-155 transposed
Cma14g01778 Cma-Chr14:12873572 Cma11g00271 Cma-Chr11:1371544 4.70E-178 transposed
Cma15g00051 Cma-Chr15:273510 Cma11g00271 Cma-Chr11:1371544 6.67E-147 transposed
Cma10g00232 Cma-Chr10:1031940 Cma11g00271 Cma-Chr11:1371544 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g317 . Blo16g00136 . . . Bpe13g00351 . . . . Cma10g00232 Cma11g00271 Car10g00218 Car11g00248 . . Cpe04g01403 . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . . Cone13ag0281 . . . . . . . . . . . . . . Cmo10g00246 Cmo11g00277 . . . . . Cpe18g00760 . . . . . . . . . . . . . . Lsi06g01329 Csa01g00386 Chy02g02360 Cme02g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010794 0 2 2 0 1 0 2 0 1 0 0 1 1 1 1 2 1 1 1 0 1 1 1 1 1 0 1 5 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00271 Cma_Chr11 FPKM 5.252426 5.686686 7.665665 8.256282 86.796608 81.571465 87.430931 9.534114 8.53087 8.991926