Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00277 ATGCGAGGTTTTGCACCGTCGGATAGCATAGGGATTACGAGAGGGTTCCGAAGTTATTACGATCCTTGTAGCTGCAATTTGTTCGGTACGGTTGTCAACTTTAGATACAATGTGGGTTTTGGGTTTTTGACGGAGTTTATCGCGGGTAGCGCTACAGTGTTCAGGTCTTGGCCGTCTATTAGATATCCGTTGGGGACGTTTTGGTATGGGGATCTTTCACCTCGCTATATTGCAAGAAATTTGAATAAGATGGCTGTGGTCAGCAAAACCAGAAGTACGCTCGAGGGGCTTGTTAGAGATAGTTCATTGAAATGGTTGTTAGGGAATCGGAGCTTCTTTGATGAAGAACTTGAAGAAATTGAAAGATCTCCTTCTGCTCAGAGGAATTGGATAAGTGAGCTCTCTCCATTTGCCAATGTGGTTGTTCGGAGATGTTCTAAAATCCTTGGTGTTTCTGCTAGCGAACTTCAAGAAAGTTTTAATGTGGAGGCAATTGATTCAATCAAGGGTTCTTCGAATTATGCGAGAAACTTTCTAGAGTATTGCAGTTTCAGGGCACTTGCGGTATCTACACATAATACAGGCTATTTGGCTGATAAAAGATTTCGACGCTTGACATTTGACATGATGATAGCTTGGGAAGCCCCAGCAAGTTCTAGCCAGCCTGAACTTAATATTGCTGAAGATGCATCAGTTGGGGTGGAGGCTTTCTCAAGAATTGCTCCAGCAGTTCCCATAATTTCAAACGTGATCATTAGCGAAAATATTTTTGAGGTGCTTACTACATCAGCTGGTGCTAGACTTGAGTTCTCGGTCTACGACAAGTACCTGAGCTCACTGGAAAAAGTTATTAGAAAAATGAAAAGCCTATCAGAGTCGAACCTTCTTCTGTCTGAAAGATCATTAAGAGAAGAAAGGATTTTAGAAATGGATGGAACAGTCACCACACAACCAGTTCTTGAACATGTAGGAATTTCTACGTGGCCGGGTAGGTTGGTTCTCACAGATCATGCACTTTACTTTGAAGCTCTTCGGGTTGTGTCGTTTGACAAGGCAAAAAAATATGACTTATCTGATGATCTGAAGCAGGTTGTCAAACCTGAATTGACTGGACCATGGGGTACTCGGCTCTTTGATAAGGCAGTTCTGTATAAATCCATTTCCTTATCAGAACCAGTTGTGTTTGAGTTTCCCGAACTTAAAGGGCATACTCGTCGAGATTTTTGGCTGGCAATCATCCGTGAGGTCTTATATGTTCATAGATTTATCAATAAGTTCCAGATCAAGGGAATTCAAAGGAGTGAAGCTCTCACAAAAGCTGTACTTGGAATTCTGCGTTTACAAGCCATTCAAGATATATGTTCTACACCGTCTCTTGGGTGCGAATCGCTTCTCATGTTTAATCTTTGCGATCAACTTCCAGGTGGGGACTTAATATTGGAAGCCCTTGCTAATATGTCAGACATGAAGGAGACTGACCGAACAAACAAATCTAGTCATGAAAAGGGAATGTACTCGATTTCATCATTCGATTTCGTTTCTCACTTGGGATTCGGAATGGGAACAGCTTTAACCGATTCCAATGAAAATGAGCTTGTTGTGGGTGAGATTGCTGTTGGAAAAATGACTCCTTTGGAAAGGGCAGTCAAGGAATCCAAAAACTGTTATGAAAAGGTGGTGATGGCTCGAGAGACGGTCGATGGAGCAAAAGTAGATGGCATGGATACTAATTTAGCAGTGATGAAGGAATTAATGTTGCCGGTGAGTGAAGTTGGGAAGTGCCTTCTTTCTTTGGCACTATGGGAAGATCCTATGAAGTCTTCGGCGTTCTGTGTGGTCTCCAGTTACATTATCTACAGGGACTGGCTGTCGTACGCAGCTGCTCTGCTACTCGTGTTCATGGCAGTTTTCATGATGCTAAGTCGACTTTTCAACCAAGGTAACCCAGTCAATGAAGTTAAGGTCATAGCACCTCCAGCAATGAATGCAATGGAGCAGCTTTTGGCGGTTCAGAATGCGATTTCGCAAGCTGAAGAGTTCATCCAAGACGGAAATATCGTTCTCCTCAAGCTGCGTGGCTTGCTGCTCGCCATTTTCCCAAAGGCCACAATGAAGTTTGCAAGTTCTCTTCTAGTGATAGCCATGACTCTGGCCTTCCTTCCCACAAAATACATAGTTTTAATGGTGTTCTTGGAGGCCTTTACGAGATACTCACCCCCAAGAAAAGCAAGCACAGAGAGATTGACAAGAAGAGTAGGGGAATGGTGGTTCAGCATTCCAGCAGCTCCTGTTGCTCTTGTGAGGGAAAAGAAGGAAGACAAGAAGAGGAAATGA 2334 43.19 MRGFAPSDSIGITRGFRSYYDPCSCNLFGTVVNFRYNVGFGFLTEFIAGSATVFRSWPSIRYPLGTFWYGDLSPRYIARNLNKMAVVSKTRSTLEGLVRDSSLKWLLGNRSFFDEELEEIERSPSAQRNWISELSPFANVVVRRCSKILGVSASELQESFNVEAIDSIKGSSNYARNFLEYCSFRALAVSTHNTGYLADKRFRRLTFDMMIAWEAPASSSQPELNIAEDASVGVEAFSRIAPAVPIISNVIISENIFEVLTTSAGARLEFSVYDKYLSSLEKVIRKMKSLSESNLLLSERSLREERILEMDGTVTTQPVLEHVGISTWPGRLVLTDHALYFEALRVVSFDKAKKYDLSDDLKQVVKPELTGPWGTRLFDKAVLYKSISLSEPVVFEFPELKGHTRRDFWLAIIREVLYVHRFINKFQIKGIQRSEALTKAVLGILRLQAIQDICSTPSLGCESLLMFNLCDQLPGGDLILEALANMSDMKETDRTNKSSHEKGMYSISSFDFVSHLGFGMGTALTDSNENELVVGEIAVGKMTPLERAVKESKNCYEKVVMARETVDGAKVDGMDTNLAVMKELMLPVSEVGKCLLSLALWEDPMKSSAFCVVSSYIIYRDWLSYAAALLLVFMAVFMMLSRLFNQGNPVNEVKVIAPPAMNAMEQLLAVQNAISQAEEFIQDGNIVLLKLRGLLLAIFPKATMKFASSLLVIAMTLAFLPTKYIVLMVFLEAFTRYSPPRKASTERLTRRVGEWWFSIPAAPVALVREKKEDKKRK 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1383524 1387538 - CmaCh11G002770.1 Cma11g00277 302786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00277 777 PANTHER HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR (DUF639)-RELATED 84 775 - -
Cma11g00277 777 Pfam Plant protein of unknown function (DUF639) 542 769 IPR006927 -
Cma11g00277 777 PANTHER HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR (DUF639) 84 775 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00277 - - - cmos:111429749 1176.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00231 Cma11g00277 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00227 Cma-Chr3:3393401 Cma11g00277 Cma-Chr11:1383524 4.90E-102 dispersed
Cma11g00277 Cma-Chr11:1383524 Cma15g00802 Cma-Chr15:4021368 0 dispersed
Cma10g00231 Cma-Chr10:1026601 Cma11g00277 Cma-Chr11:1383524 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g315 . . Bda06g00807 Bda15g00515 Bpe12g00692 . . Bma12g01232 . . Cma10g00231 Cma11g00277 Car10g00216 Car11g00252 . . Cpe04g01401 . . . . . . . Cla06g01464 Cam06g1617 Cec06g1679 Cco06g1672 Clacu06g1581 Cmu06g1532 Cre06g2344 . . . . . . . . Blo13g00167 Blo15g00069 . . Bpe07g01036 . . Bma08g00061 . . Cmo11g00281 . . . . . Cpe18g00761 . . . . . . . . . . . . . . Lsi06g01327 Csa01g00389 Chy02g02358 Cme02g01736
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004253 3 1 2 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 4 5 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00277 Cma_Chr11 FPKM 6.612213 8.359933 66.464027 67.822266 14.431702 11.648525 14.488464 28.678778 31.246016 32.399464