Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00279 ATGGATCCTGAGTTGCAGTCCTTCAAGCCATCCTTCTCCTTCCCTGACTTCATGGATCCCAATTTGGAGCTAATGGGTCACTATTCCGCTTCCAACCCAGTTGTTCTAGACAACCCATCTCTGAATTTCACCAACCTCTTGCCTTTCTCAAACGACATGTTCATCCCTCACCACCAAACCCCACCAGAATTCCCACAGAGTTTAGGAGACTGTAACAGCTTCCAAATTATGCAGCAAGCCCCTCCGGATCCCCCAGTTTGTGCTGAATTTCATGAGATGAAGAAGAGAAGACCCATGGATGTTTCAGAGAGCAGCTCTGGAATTTCAACTTCGGAAACAGGGTTGTTCAACGCCAAAAATAGGTCAGGGAAAGGAAAGAGATTGAAAAGTATAGAGAAAGAAGAAGAGAAATCAAGAAGAGAAGTGGTGCATGTCAGAGCTAGAAGAGGGCAAGCCACTGATAGCCACAGCTTAGCTGAAAGGGTGAGAAGAGGAAAAATCAACGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGATGCTACAAGACCATGGGCATGGCAGTCATGTTGGATGAGATAATCAACTATGTCCAGTCTCTGCAGAATCAAGTAGAGTTCTTATCCATGAAGTTAGCTGCAGCTAGCTCGTTGAATGACTTCAACTCGAAGGCCGACGTGCTATCAAAATTACAGGCAAGAGCACATGAAGCAAGAGAATTGGAGAGATTGATGAGAGAAGGATATGGAGGAGTAGCTTGCTTCCACTCAACTTTGCCTCTTTGA 786 45.17 MDPELQSFKPSFSFPDFMDPNLELMGHYSASNPVVLDNPSLNFTNLLPFSNDMFIPHHQTPPEFPQSLGDCNSFQIMQQAPPDPPVCAEFHEMKKRRPMDVSESSSGISTSETGLFNAKNRSGKGKRLKSIEKEEEKSRREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSLNDFNSKADVLSKLQARAHEARELERLMREGYGGVACFHSTLPL 261
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 1389994 1391498 - CmaCh11G002790.1 Cma11g00279 302788
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00279 261 MobiDBLite consensus disorder prediction 98 157 - -
Cma11g00279 261 Coils Coil 198 218 - -
Cma11g00279 261 CDD bHLH_AtBPE_like 142 223 - -
Cma11g00279 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 217 IPR036638 GO:0046983
Cma11g00279 261 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 6 260 IPR024097 GO:0006355
Cma11g00279 261 SMART finulus 157 207 IPR011598 GO:0046983
Cma11g00279 261 MobiDBLite consensus disorder prediction 102 118 - -
Cma11g00279 261 Gene3D - 147 221 IPR036638 GO:0046983
Cma11g00279 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 201 IPR011598 GO:0046983
Cma11g00279 261 Pfam Helix-loop-helix DNA-binding domain 155 202 IPR011598 GO:0046983
Cma11g00279 261 PANTHER TRANSCRIPTION FACTOR BEE 1 6 260 - -
Cma11g00279 261 MobiDBLite consensus disorder prediction 125 157 - -
       

Event-related genes


       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00279 Cma-Chr11:1389994 Cma15g00915 Cma-Chr15:4738386 7.11E-48 dispersed
Cma10g00230 Cma-Chr10:1021588 Cma11g00279 Cma-Chr11:1389994 4.88E-93 wgd
Cma11g00279 Cma-Chr11:1389994 Cma13g01023 Cma-Chr13:7841204 1.46E-75 wgd
Cma11g00279 Cma-Chr11:1389994 Cma18g00043 Cma-Chr18:174590 1.18E-54 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35799 PF00010 HLH 2.80E-05 No_clan Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00279 - - csv:101209353 282.337