Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma11g00279 | ATGGATCCTGAGTTGCAGTCCTTCAAGCCATCCTTCTCCTTCCCTGACTTCATGGATCCCAATTTGGAGCTAATGGGTCACTATTCCGCTTCCAACCCAGTTGTTCTAGACAACCCATCTCTGAATTTCACCAACCTCTTGCCTTTCTCAAACGACATGTTCATCCCTCACCACCAAACCCCACCAGAATTCCCACAGAGTTTAGGAGACTGTAACAGCTTCCAAATTATGCAGCAAGCCCCTCCGGATCCCCCAGTTTGTGCTGAATTTCATGAGATGAAGAAGAGAAGACCCATGGATGTTTCAGAGAGCAGCTCTGGAATTTCAACTTCGGAAACAGGGTTGTTCAACGCCAAAAATAGGTCAGGGAAAGGAAAGAGATTGAAAAGTATAGAGAAAGAAGAAGAGAAATCAAGAAGAGAAGTGGTGCATGTCAGAGCTAGAAGAGGGCAAGCCACTGATAGCCACAGCTTAGCTGAAAGGGTGAGAAGAGGAAAAATCAACGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGATGCTACAAGACCATGGGCATGGCAGTCATGTTGGATGAGATAATCAACTATGTCCAGTCTCTGCAGAATCAAGTAGAGTTCTTATCCATGAAGTTAGCTGCAGCTAGCTCGTTGAATGACTTCAACTCGAAGGCCGACGTGCTATCAAAATTACAGGCAAGAGCACATGAAGCAAGAGAATTGGAGAGATTGATGAGAGAAGGATATGGAGGAGTAGCTTGCTTCCACTCAACTTTGCCTCTTTGA | 786 | 45.17 | MDPELQSFKPSFSFPDFMDPNLELMGHYSASNPVVLDNPSLNFTNLLPFSNDMFIPHHQTPPEFPQSLGDCNSFQIMQQAPPDPPVCAEFHEMKKRRPMDVSESSSGISTSETGLFNAKNRSGKGKRLKSIEKEEEKSRREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSLNDFNSKADVLSKLQARAHEARELERLMREGYGGVACFHSTLPL | 261 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 1389994 | 1391498 | - | CmaCh11G002790.1 | Cma11g00279 | 302788 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma11g00279 | 261 | MobiDBLite | consensus disorder prediction | 98 | 157 | - | - | |
| Cma11g00279 | 261 | Coils | Coil | 198 | 218 | - | - | |
| Cma11g00279 | 261 | CDD | bHLH_AtBPE_like | 142 | 223 | - | - | |
| Cma11g00279 | 261 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 149 | 217 | IPR036638 | GO:0046983 | |
| Cma11g00279 | 261 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 6 | 260 | IPR024097 | GO:0006355 | |
| Cma11g00279 | 261 | SMART | finulus | 157 | 207 | IPR011598 | GO:0046983 | |
| Cma11g00279 | 261 | MobiDBLite | consensus disorder prediction | 102 | 118 | - | - | |
| Cma11g00279 | 261 | Gene3D | - | 147 | 221 | IPR036638 | GO:0046983 | |
| Cma11g00279 | 261 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 151 | 201 | IPR011598 | GO:0046983 | |
| Cma11g00279 | 261 | Pfam | Helix-loop-helix DNA-binding domain | 155 | 202 | IPR011598 | GO:0046983 | |
| Cma11g00279 | 261 | PANTHER | TRANSCRIPTION FACTOR BEE 1 | 6 | 260 | - | - | |
| Cma11g00279 | 261 | MobiDBLite | consensus disorder prediction | 125 | 157 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma11g00279 | Cma18g00043 | CCT | |
| Cma11g00279 | Cma13g01023 | CCT | |
| Cma11g00279 | Cma13g01023 | ECH | |
| Cma11g00279 | Cma18g00043 | ECH | |
| Cma10g00230 | Cma11g00279 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma11g00279 | Cma-Chr11:1389994 | Cma15g00915 | Cma-Chr15:4738386 | 7.11E-48 | dispersed | |
| Cma10g00230 | Cma-Chr10:1021588 | Cma11g00279 | Cma-Chr11:1389994 | 4.88E-93 | wgd | |
| Cma11g00279 | Cma-Chr11:1389994 | Cma13g01023 | Cma-Chr13:7841204 | 1.46E-75 | wgd | |
| Cma11g00279 | Cma-Chr11:1389994 | Cma18g00043 | Cma-Chr18:174590 | 1.18E-54 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35799 | PF00010 | HLH | 2.80E-05 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma11g00279 | - | - | csv:101209353 | 282.337 |