Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00283 ATGGCTATGGAGCCTGAAAGATCAAAGCCACTGCACAACTTCTCCATGCCCTATCTCACATGGGGTTCACAAAGATTCCTCAAGTGTATCAACCTTCCTTCCAACTCCAATAAATCCAACCCCCCGAACTTCACCAACCTTTCTTCTCCGATGAATCATGTAACACACAAACCAAGTAACGGGAACAACCATCGAACCAGTTCCATCCAGGAATCGAAGAAACCCAAATTTTCAATCGTTGATGAAGCGGGCGGAGACGAATCCGCTGCGGCCAGGCCGTGGAATTTGAGGACTCGCAGAGCAGCTTGTAAGGGTCCTCAAGATGAGAGGAATTTGGAATTGGGTTCATCTAAGAATGAGAAGGAGAAGAATCGGAGTGCGTTAATTGTATCCCTATCGAAAGAGGAGATCGAAGAGGACTTTGGGGTGCTGGTCGCTAGGCTACCGAGGAGGCCAAAGAAGAGGCCTAGAGCTGTACAGAAGCAATTGGATACGCTTTTTCCTGGGCTGTTTCTTACTCAAATTACTCCGGATTCCTATAAACTTGCTGATTAA 555 47.03 MAMEPERSKPLHNFSMPYLTWGSQRFLKCINLPSNSNKSNPPNFTNLSSPMNHVTHKPSNGNNHRTSSIQESKKPKFSIVDEAGGDESAAARPWNLRTRRAACKGPQDERNLELGSSKNEKEKNRSALIVSLSKEEIEEDFGVLVARLPRRPKKRPRAVQKQLDTLFPGLFLTQITPDSYKLAD 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1407135 1408048 - CmaCh11G002830.1 Cma11g00283 302792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00283 184 MobiDBLite consensus disorder prediction 34 124 - -
Cma11g00283 184 MobiDBLite consensus disorder prediction 34 68 - -
Cma11g00283 184 MobiDBLite consensus disorder prediction 102 124 - -
Cma11g00283 184 PANTHER PUTATIVE (DUF1639)-RELATED 2 182 - -
Cma11g00283 184 PANTHER OS01G0688600 PROTEIN 2 182 - -
Cma11g00283 184 Pfam Protein of unknown function (DUF1639) 132 180 IPR012438 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00283 - - - cmax:111496487 351.673
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00304 Cma11g00283 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00283 Cma-Chr11:1407135 Cma15g00920 Cma-Chr15:4804219 1.08E-06 dispersed
Cma10g00304 Cma-Chr10:1375377 Cma11g00283 Cma-Chr11:1407135 4.13E-82 wgd
Cma11g00283 Cma-Chr11:1407135 Cma18g01009 Cma-Chr18:8459894 4.40E-18 wgd
Cma11g00283 Cma-Chr11:1407135 Cma04g01500 Cma-Chr4:7628705 1.22E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g300 . . . . . Bpe13g00357 . . . . Cma10g00304 Cma11g00283 Car10g00289 Car11g00257 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo10g00325 Cmo11g00286 . . . . . . . . . . . . . . . . . . . . Lsi06g01321 . . Cme02g01730
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011010 1 1 0 1 1 1 2 1 1 0 1 0 2 1 1 2 0 1 2 0 0 1 1 1 1 1 1 2 1 3 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00283 Cma_Chr11 FPKM 0.980292 1.758931 2.084766 1.326625 2.030743 2.018509 1.905755 2.029837 1.772924 2.391219