Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00284 | ATGGCGACTCCGTTGACAGGGCTACAACACCGGGACGGTGGCGGAGGAGTGGCTTTCTTGGCTAATTCTGTAAACAAAATGGATTCCACCTCGTCTCCGTCGTCGCCAAATGATTGTCTGAGGAGCTCCGAGCCTCAGTCTCCGATTCTTATTTTTCTTTTCTTCCATAAAGCAATTCGCAATGAGCTCGATACGCTTCACCGGCTGGCTATGGCGTTCGCCACCGGCCAGAGAGCAGATATTCGCCCATTATTTGGACGATACCATTTTTTGAGATCGATTTACAAGCACCACTCCAATGCTGAAGACGAGGTAATCTTTCCTGCACTTGATATTCGTGTGAAGAATGTAGCTCAGACCTATTCCCTTGAGCACAAGGGTGAAAGCAATCTGTTCGATCATCTTTTTGAGCTTCTTAATTCTAATACACAAAATGATGAAAGCTTCCCAAGGGAGTTAGCGTCCTGCACTGGTGCCCTAAAGACATCTGTGAGCCAGCACATGGCTAAGGAAGAAGAGCAGGTATTTCCCTTGCTTATAGAAAAGTTCTCCTTGGAAGAGCAGGCATCTCTCGTTTGGCAGTTCTTCTGCAGTATTCCTGTGTACATGATGGCTCAATTTCTGCCTTGGCTTTCATCATCTGTTTCACCCGATGAATTTCAGGATCTACAGAAATGCTTAAACAAGGTGGTCCCCGAGGAAAAGCTTCTCCAACAGGTCATATTTAGTTGGACGGAAGCGAGAAGTTGTGACTATGTATCAACAAGTTGCTTGGATGATGCTCAAGTTGGATATCATACAGATTCTACAACAAATACATCACATCATCAAATAGAAAATGTAAATTGTGCTTGTGAATCGACCAGCCGTGGGAAAAGAAAATATTTGGAGTCAAATTCTGATACATCAGATTATGTGGCAACTCATCCAATCAATGAAATACTGTTCTGGCATAATGCCATCAAAAGAGAATTGAATGACATTGCTGAGGAGGCTAGGAAGATACAACTTTCTGGGAACTTTAGCAATCTATCAACTTTTAACGAGAGGTTGCAATTCATTGCAGAAGTTTGCATTTTTCATAGTATTGCTGAGGACAAGGTAATCTTTCCTGCAGTAGATGGAGAGTTTTCTTTTCTACAGGAACACGCTGAAGAAGAAAGTCAATTCAATGAGTTTAGGAGCCTGATTGAAAAAATTCAAAGTGCAGGGGCTAATTCTACTTCAAGAGCTGAATTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATGGATACCATTAAGAGGCACTTTCATAATGAAGAAGTTCAGGTTCTTCCACTTGCTAGAAAGCACTTCAGTTTCAAGAGACAACGGGAACTTTTGTATCAAAGCCTGTGCATGATGCCCTTGAAATTGATTGAACGTGTTTTGCCATGGCTGGTAGGATCATTGAAAGAAGATGAAGCTAGAGATCTTCTTGAGAACATGCAGTTGGCAGCTCCAGCTAAAGATACTGCTCTTGTGACTCTCTTTTCTGGTTGGGCTTGCAAGGCCCGTAATAATGGTTCGTGCCTGTCTTCAAGAGCAGTTGGTTGTTGTGCAGTTACAAGGCTCACTGACATTGAAGAAGACATTATTCAATCATCTTGTTCTTGTACCCTTGCATTGATTGCAAGGGAAGGTCCAAAGTCAGATCCCGAAACTAATGTTACTGTTAAGAGGCCAGCCATACGCAATAATATTCCTATGCCATGCAAAACTTGTGATGGCCGTATTGCTTCGGAGACTGTTAATGTCCAGCAACAGTGTTGTAGGGATCAGTCCTGCCGAGTTCCAGCTTTAGGAGTAAACAGCAAGAATCTGGGGTTAAGTTCTATTTTCACATCCAAGTCTATGCGATCCTTATCTCCCAGCTCTTGTGCACCATCTCTCAATTCCAGCCTTTTTTCATGGGAAACAGATTGTGCGTCTTCTGATGTTGGGTCTGCAGGCCGTCCCATTGATACTATTTTTAAATTTCACAAAGCTATACGCAAAGACCTGGAGTATTTAGACGTGGAATCAGGAAAACTTAGTGATTGTGGTGGAACATTTCTCCGGCAATTTATTGGAAGATTTCGCCTTCTATGGGGGTTATATAGAGCTCATAGTAATGCTGAAGATGATATTGTATTTCCTGCGCTGGAATCCAAAGAGGCATTGCATAACGTAAGTCACTCGTATACACTAGATCATAAGCAGGAGGAAAAATTATTTGAGGACATTTCATGTGTTATCTCTGAGATTTCATTCCTCCATGAAAGTCTGCATGAGGTTTCGTTGGATGAGAACTTTTCTAGGAGTGATGTTGGCTCTGTTAATGTGGCGGGGAAGGATTGTAATAGAAAGTACAATGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACCCTGGATCAGCATATTTTTAGGGAAGAACTTGAACTTTGGCCGCTGTTTGGGAAACACTTCTCCGTGGAGGAGCAAGACAAAATAGTTGGTCGTATTATTGGGACCACAGGTGCTGAAGTTCTTCAGTCAATGTTGCCATGGGTAACATCTGCACTTACTCAGGATGAACAGAATACTATGATGGATACATGGAAGCAAGCAACGAAAAACACTATGTTCAATGAATGGCTTAATGAATGTTGGAGAGGGACTGCTTCATCTACTCTAAATGGTGCAACATCGGAAGCTAGTGTTGCTGAAAAAGATTCTGGGCTTATTGGGAGCTTGGATCAGAATGATCAAATGTTCAAGCCTGGTTGGAAAGATATTTTTCGCATGAACCAAAATGAACTGGAATCAGAAATCAGAAAGGTTTATCAGGACTCGACTCTTGATCCAAGGAGAAAAGCATATCTCGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAACTACCTCAAGCAAATGTAGAAGATAATTCCAATGGTGAAGATGTAGTGGGACGAACACCATCTTTTCGCTGTGCTGAGAAAAAAGTGTTTGGGTGTGAACATTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGTGGAAAGTTGTTTACTTGTCGATTCTGTCATGACAATGTCAGCGATCACTCAATGGACAGAAAAGCAACATCAGAGATGATGTGCATGAACTGTCTAACAATTCAACCGGTTGGGCCAGTATGCACAACACCTTCTTGCAATGGATTATCAATGGCAAAATACTATTGCAATATTTGCAAATTTTTTGATGATGAAAGGGCTGTGTATCATTGCCCATTTTGTAACTTGTGCCGTGTTGGGAAGGGTCTTGGAATTGATTTCTTCCATTGCATGATTTGCAATTGCTGCCTTGGTATAAAGCTGGAGAACCACAAGTGCCTGGAGAAAAGTTTAGAGACAAATTGTCCCATCTGTTGTGACTTCTTATTTACATCCAGTGCAACAGTCAGACCGCTACCCTGTGGTCATTACATGCATTCAGCATGCTTTCAGGCATACACATGCAGCCATTATACCTGTCCTATTTGCAGCAAGTCCTTGGGAGATATGGCGGTTTATTTCGGCATGCTTGACGCCCTGTTGGCTACTGAGGAGCTGCCAGAAGAGTACAGGGATCGTTGCCAGGACATATTGTGCAATGACTGTGAGAGGAAAGGCGCATCAAGGTTTCATTGGTTATATCATAAATGTGGGTATTGTGGATCATACAACACCCGGTTTTAA | 3729 | 42.26 | MATPLTGLQHRDGGGGVAFLANSVNKMDSTSSPSSPNDCLRSSEPQSPILIFLFFHKAIRNELDTLHRLAMAFATGQRADIRPLFGRYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSNTQNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFFCSIPVYMMAQFLPWLSSSVSPDEFQDLQKCLNKVVPEEKLLQQVIFSWTEARSCDYVSTSCLDDAQVGYHTDSTTNTSHHQIENVNCACESTSRGKRKYLESNSDTSDYVATHPINEILFWHNAIKRELNDIAEEARKIQLSGNFSNLSTFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFLQEHAEEESQFNEFRSLIEKIQSAGANSTSRAEFYVKLCSHADQIMDTIKRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSLKEDEARDLLENMQLAAPAKDTALVTLFSGWACKARNNGSCLSSRAVGCCAVTRLTDIEEDIIQSSCSCTLALIAREGPKSDPETNVTVKRPAIRNNIPMPCKTCDGRIASETVNVQQQCCRDQSCRVPALGVNSKNLGLSSIFTSKSMRSLSPSSCAPSLNSSLFSWETDCASSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLSDCGGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVISEISFLHESLHEVSLDENFSRSDVGSVNVAGKDCNRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTMMDTWKQATKNTMFNEWLNECWRGTASSTLNGATSEASVAEKDSGLIGSLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANVEDNSNGEDVVGRTPSFRCAEKKVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQPVGPVCTTPSCNGLSMAKYYCNICKFFDDERAVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLENHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLATEELPEEYRDRCQDILCNDCERKGASRFHWLYHKCGYCGSYNTRF | 1242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1408956 | 1418976 | - | CmaCh11G002840.1 | Cma11g00284 | 302793 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00284 | 1242 | SUPERFAMILY | CHY zinc finger-like | 1002 | 1064 | IPR037274 | GO:0008270 | |
Cma11g00284 | 1242 | ProSiteProfiles | Zinc finger CHY-type profile. | 1001 | 1070 | IPR008913 | GO:0008270 | |
Cma11g00284 | 1242 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 1073 | 1136 | IPR017921 | - | |
Cma11g00284 | 1242 | CDD | Hr-like | 51 | 177 | - | - | |
Cma11g00284 | 1242 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1130 | 1181 | IPR013083 | - | |
Cma11g00284 | 1242 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 30 | 1241 | - | - | |
Cma11g00284 | 1242 | CDD | RING-H2_Pirh2 | 1136 | 1179 | - | - | |
Cma11g00284 | 1242 | ProSiteProfiles | Zinc finger RING-type profile. | 1137 | 1179 | IPR001841 | - | |
Cma11g00284 | 1242 | Pfam | CHY zinc finger | 1008 | 1083 | IPR008913 | GO:0008270 | |
Cma11g00284 | 1242 | Pfam | Zinc-ribbon | 1184 | 1241 | IPR039512 | - | |
Cma11g00284 | 1242 | Gene3D | nmb1532 protein domain like | 312 | 459 | - | - | |
Cma11g00284 | 1242 | Gene3D | nmb1532 protein domain like | 46 | 196 | - | - | |
Cma11g00284 | 1242 | Pfam | Hemerythrin HHE cation binding domain | 661 | 824 | IPR012312 | - | |
Cma11g00284 | 1242 | Pfam | Hemerythrin HHE cation binding domain | 309 | 443 | IPR012312 | - | |
Cma11g00284 | 1242 | Pfam | Hemerythrin HHE cation binding domain | 53 | 179 | IPR012312 | - | |
Cma11g00284 | 1242 | Gene3D | nmb1532 protein domain like | 656 | 888 | - | - | |
Cma11g00284 | 1242 | CDD | Hr-like | 663 | 823 | - | - | |
Cma11g00284 | 1242 | Gene3D | - | 1208 | 1242 | - | - | |
Cma11g00284 | 1242 | SUPERFAMILY | RING/U-box | 1136 | 1182 | - | - | |
Cma11g00284 | 1242 | SUPERFAMILY | Zinc hairpin stack | 1074 | 1130 | IPR037275 | - | |
Cma11g00284 | 1242 | CDD | Hr-like | 313 | 441 | - | - | |
Cma11g00284 | 1242 | SMART | ring_2 | 1137 | 1178 | IPR001841 | - | |
Cma11g00284 | 1242 | PANTHER | CHY ZINC FINGER PROTEIN | 30 | 1241 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00305 | Cma11g00284 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g00284 | Cma-Chr11:1408956 | Cma14g01639 | Cma-Chr14:12269590 | 4.20E-54 | dispersed | |
Cma10g00172 | Cma-Chr10:779481 | Cma11g00284 | Cma-Chr11:1408956 | 4.56E-12 | transposed | |
Cma10g00305 | Cma-Chr10:1377743 | Cma11g00284 | Cma-Chr11:1408956 | 0 | wgd | |
Cma11g00284 | Cma-Chr11:1408956 | Cma04g01497 | Cma-Chr4:7606180 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00284 | K16276 | - | csv:101215023 | 2361.64 |