Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00284 ATGGCGACTCCGTTGACAGGGCTACAACACCGGGACGGTGGCGGAGGAGTGGCTTTCTTGGCTAATTCTGTAAACAAAATGGATTCCACCTCGTCTCCGTCGTCGCCAAATGATTGTCTGAGGAGCTCCGAGCCTCAGTCTCCGATTCTTATTTTTCTTTTCTTCCATAAAGCAATTCGCAATGAGCTCGATACGCTTCACCGGCTGGCTATGGCGTTCGCCACCGGCCAGAGAGCAGATATTCGCCCATTATTTGGACGATACCATTTTTTGAGATCGATTTACAAGCACCACTCCAATGCTGAAGACGAGGTAATCTTTCCTGCACTTGATATTCGTGTGAAGAATGTAGCTCAGACCTATTCCCTTGAGCACAAGGGTGAAAGCAATCTGTTCGATCATCTTTTTGAGCTTCTTAATTCTAATACACAAAATGATGAAAGCTTCCCAAGGGAGTTAGCGTCCTGCACTGGTGCCCTAAAGACATCTGTGAGCCAGCACATGGCTAAGGAAGAAGAGCAGGTATTTCCCTTGCTTATAGAAAAGTTCTCCTTGGAAGAGCAGGCATCTCTCGTTTGGCAGTTCTTCTGCAGTATTCCTGTGTACATGATGGCTCAATTTCTGCCTTGGCTTTCATCATCTGTTTCACCCGATGAATTTCAGGATCTACAGAAATGCTTAAACAAGGTGGTCCCCGAGGAAAAGCTTCTCCAACAGGTCATATTTAGTTGGACGGAAGCGAGAAGTTGTGACTATGTATCAACAAGTTGCTTGGATGATGCTCAAGTTGGATATCATACAGATTCTACAACAAATACATCACATCATCAAATAGAAAATGTAAATTGTGCTTGTGAATCGACCAGCCGTGGGAAAAGAAAATATTTGGAGTCAAATTCTGATACATCAGATTATGTGGCAACTCATCCAATCAATGAAATACTGTTCTGGCATAATGCCATCAAAAGAGAATTGAATGACATTGCTGAGGAGGCTAGGAAGATACAACTTTCTGGGAACTTTAGCAATCTATCAACTTTTAACGAGAGGTTGCAATTCATTGCAGAAGTTTGCATTTTTCATAGTATTGCTGAGGACAAGGTAATCTTTCCTGCAGTAGATGGAGAGTTTTCTTTTCTACAGGAACACGCTGAAGAAGAAAGTCAATTCAATGAGTTTAGGAGCCTGATTGAAAAAATTCAAAGTGCAGGGGCTAATTCTACTTCAAGAGCTGAATTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATGGATACCATTAAGAGGCACTTTCATAATGAAGAAGTTCAGGTTCTTCCACTTGCTAGAAAGCACTTCAGTTTCAAGAGACAACGGGAACTTTTGTATCAAAGCCTGTGCATGATGCCCTTGAAATTGATTGAACGTGTTTTGCCATGGCTGGTAGGATCATTGAAAGAAGATGAAGCTAGAGATCTTCTTGAGAACATGCAGTTGGCAGCTCCAGCTAAAGATACTGCTCTTGTGACTCTCTTTTCTGGTTGGGCTTGCAAGGCCCGTAATAATGGTTCGTGCCTGTCTTCAAGAGCAGTTGGTTGTTGTGCAGTTACAAGGCTCACTGACATTGAAGAAGACATTATTCAATCATCTTGTTCTTGTACCCTTGCATTGATTGCAAGGGAAGGTCCAAAGTCAGATCCCGAAACTAATGTTACTGTTAAGAGGCCAGCCATACGCAATAATATTCCTATGCCATGCAAAACTTGTGATGGCCGTATTGCTTCGGAGACTGTTAATGTCCAGCAACAGTGTTGTAGGGATCAGTCCTGCCGAGTTCCAGCTTTAGGAGTAAACAGCAAGAATCTGGGGTTAAGTTCTATTTTCACATCCAAGTCTATGCGATCCTTATCTCCCAGCTCTTGTGCACCATCTCTCAATTCCAGCCTTTTTTCATGGGAAACAGATTGTGCGTCTTCTGATGTTGGGTCTGCAGGCCGTCCCATTGATACTATTTTTAAATTTCACAAAGCTATACGCAAAGACCTGGAGTATTTAGACGTGGAATCAGGAAAACTTAGTGATTGTGGTGGAACATTTCTCCGGCAATTTATTGGAAGATTTCGCCTTCTATGGGGGTTATATAGAGCTCATAGTAATGCTGAAGATGATATTGTATTTCCTGCGCTGGAATCCAAAGAGGCATTGCATAACGTAAGTCACTCGTATACACTAGATCATAAGCAGGAGGAAAAATTATTTGAGGACATTTCATGTGTTATCTCTGAGATTTCATTCCTCCATGAAAGTCTGCATGAGGTTTCGTTGGATGAGAACTTTTCTAGGAGTGATGTTGGCTCTGTTAATGTGGCGGGGAAGGATTGTAATAGAAAGTACAATGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACCCTGGATCAGCATATTTTTAGGGAAGAACTTGAACTTTGGCCGCTGTTTGGGAAACACTTCTCCGTGGAGGAGCAAGACAAAATAGTTGGTCGTATTATTGGGACCACAGGTGCTGAAGTTCTTCAGTCAATGTTGCCATGGGTAACATCTGCACTTACTCAGGATGAACAGAATACTATGATGGATACATGGAAGCAAGCAACGAAAAACACTATGTTCAATGAATGGCTTAATGAATGTTGGAGAGGGACTGCTTCATCTACTCTAAATGGTGCAACATCGGAAGCTAGTGTTGCTGAAAAAGATTCTGGGCTTATTGGGAGCTTGGATCAGAATGATCAAATGTTCAAGCCTGGTTGGAAAGATATTTTTCGCATGAACCAAAATGAACTGGAATCAGAAATCAGAAAGGTTTATCAGGACTCGACTCTTGATCCAAGGAGAAAAGCATATCTCGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAACTACCTCAAGCAAATGTAGAAGATAATTCCAATGGTGAAGATGTAGTGGGACGAACACCATCTTTTCGCTGTGCTGAGAAAAAAGTGTTTGGGTGTGAACATTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGTGGAAAGTTGTTTACTTGTCGATTCTGTCATGACAATGTCAGCGATCACTCAATGGACAGAAAAGCAACATCAGAGATGATGTGCATGAACTGTCTAACAATTCAACCGGTTGGGCCAGTATGCACAACACCTTCTTGCAATGGATTATCAATGGCAAAATACTATTGCAATATTTGCAAATTTTTTGATGATGAAAGGGCTGTGTATCATTGCCCATTTTGTAACTTGTGCCGTGTTGGGAAGGGTCTTGGAATTGATTTCTTCCATTGCATGATTTGCAATTGCTGCCTTGGTATAAAGCTGGAGAACCACAAGTGCCTGGAGAAAAGTTTAGAGACAAATTGTCCCATCTGTTGTGACTTCTTATTTACATCCAGTGCAACAGTCAGACCGCTACCCTGTGGTCATTACATGCATTCAGCATGCTTTCAGGCATACACATGCAGCCATTATACCTGTCCTATTTGCAGCAAGTCCTTGGGAGATATGGCGGTTTATTTCGGCATGCTTGACGCCCTGTTGGCTACTGAGGAGCTGCCAGAAGAGTACAGGGATCGTTGCCAGGACATATTGTGCAATGACTGTGAGAGGAAAGGCGCATCAAGGTTTCATTGGTTATATCATAAATGTGGGTATTGTGGATCATACAACACCCGGTTTTAA 3729 42.26 MATPLTGLQHRDGGGGVAFLANSVNKMDSTSSPSSPNDCLRSSEPQSPILIFLFFHKAIRNELDTLHRLAMAFATGQRADIRPLFGRYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSNTQNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFFCSIPVYMMAQFLPWLSSSVSPDEFQDLQKCLNKVVPEEKLLQQVIFSWTEARSCDYVSTSCLDDAQVGYHTDSTTNTSHHQIENVNCACESTSRGKRKYLESNSDTSDYVATHPINEILFWHNAIKRELNDIAEEARKIQLSGNFSNLSTFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFLQEHAEEESQFNEFRSLIEKIQSAGANSTSRAEFYVKLCSHADQIMDTIKRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSLKEDEARDLLENMQLAAPAKDTALVTLFSGWACKARNNGSCLSSRAVGCCAVTRLTDIEEDIIQSSCSCTLALIAREGPKSDPETNVTVKRPAIRNNIPMPCKTCDGRIASETVNVQQQCCRDQSCRVPALGVNSKNLGLSSIFTSKSMRSLSPSSCAPSLNSSLFSWETDCASSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLSDCGGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVISEISFLHESLHEVSLDENFSRSDVGSVNVAGKDCNRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTMMDTWKQATKNTMFNEWLNECWRGTASSTLNGATSEASVAEKDSGLIGSLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANVEDNSNGEDVVGRTPSFRCAEKKVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQPVGPVCTTPSCNGLSMAKYYCNICKFFDDERAVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLENHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLATEELPEEYRDRCQDILCNDCERKGASRFHWLYHKCGYCGSYNTRF 1242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1408956 1418976 - CmaCh11G002840.1 Cma11g00284 302793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00284 1242 SUPERFAMILY CHY zinc finger-like 1002 1064 IPR037274 GO:0008270
Cma11g00284 1242 ProSiteProfiles Zinc finger CHY-type profile. 1001 1070 IPR008913 GO:0008270
Cma11g00284 1242 ProSiteProfiles Zinc finger CTCHY-type profile. 1073 1136 IPR017921 -
Cma11g00284 1242 CDD Hr-like 51 177 - -
Cma11g00284 1242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1130 1181 IPR013083 -
Cma11g00284 1242 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 30 1241 - -
Cma11g00284 1242 CDD RING-H2_Pirh2 1136 1179 - -
Cma11g00284 1242 ProSiteProfiles Zinc finger RING-type profile. 1137 1179 IPR001841 -
Cma11g00284 1242 Pfam CHY zinc finger 1008 1083 IPR008913 GO:0008270
Cma11g00284 1242 Pfam Zinc-ribbon 1184 1241 IPR039512 -
Cma11g00284 1242 Gene3D nmb1532 protein domain like 312 459 - -
Cma11g00284 1242 Gene3D nmb1532 protein domain like 46 196 - -
Cma11g00284 1242 Pfam Hemerythrin HHE cation binding domain 661 824 IPR012312 -
Cma11g00284 1242 Pfam Hemerythrin HHE cation binding domain 309 443 IPR012312 -
Cma11g00284 1242 Pfam Hemerythrin HHE cation binding domain 53 179 IPR012312 -
Cma11g00284 1242 Gene3D nmb1532 protein domain like 656 888 - -
Cma11g00284 1242 CDD Hr-like 663 823 - -
Cma11g00284 1242 Gene3D - 1208 1242 - -
Cma11g00284 1242 SUPERFAMILY RING/U-box 1136 1182 - -
Cma11g00284 1242 SUPERFAMILY Zinc hairpin stack 1074 1130 IPR037275 -
Cma11g00284 1242 CDD Hr-like 313 441 - -
Cma11g00284 1242 SMART ring_2 1137 1178 IPR001841 -
Cma11g00284 1242 PANTHER CHY ZINC FINGER PROTEIN 30 1241 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00305 Cma11g00284 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00284 Cma-Chr11:1408956 Cma14g01639 Cma-Chr14:12269590 4.20E-54 dispersed
Cma10g00172 Cma-Chr10:779481 Cma11g00284 Cma-Chr11:1408956 4.56E-12 transposed
Cma10g00305 Cma-Chr10:1377743 Cma11g00284 Cma-Chr11:1408956 0 wgd
Cma11g00284 Cma-Chr11:1408956 Cma04g01497 Cma-Chr4:7606180 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00284 K16276 - csv:101215023 2361.64