Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00289 ATGGATCCACCGCCACCACCTGCCGCCACTGCAGCTACAGCTGCGGCGACCGCCGCTGCTAACTTTGCAGCGACCGCGATTCAGCACAACTATCAGGATTCCATAGAATCCTCACCCCGTTCCAACAACGCCGACTCTTGGGACGACCCTCTCCCGCCAGTGCCAGGCGCCAAACTTCGCCTTATGTGCAGCTATGGCGGCCACATTATCCCTCGTCCTCATGATAAGTCACTCTGCTACGTCGGGGGTGATACCCGCATTGTCGTCGTCGACCGCCATTCCTCTCTTTCCGACCTCTGCATGCGCCTCTCACGAACACTCCTTAATGGCCGCCCATTCACCCTCAAGTACCAGCTTCCTCACGAAGATCTCGATTCCTTAATTTCCATAGCGACGGATGAAGATCTCGAGAACATGATTGAGGAATACGACCGAATCACCATGGCTTCGCCGTTGAAACCTCTGCGAATCCGTCTGTTCATCTTCTTTACCAAGCCTGAAACTGTGGCTTCTATGGGTTCGTTGCTCGACGATGCCAAACACGAGACGTGGTTCGTCGATGCACTAAATAGCTCGGCCGGGATGATTCCGAGAGGGCTTTCCGATTCGGCTACCATGGAGTGTATGGTGAATCTCGACGCGGTTCGTGGGAGTGATTCGTGTAATGATTTGGAAAATCAAGGTCATGATTCTCTAGGGCATATTGACAAACAGGTCGAGAAGAATAGTAATTCGGCACACGATGTGCAATCGATTCCTGATTCTCCCGCGGTGGAAAATGATTCTTCGTTTGGTTCGTCTTCATCGGTGCCGTCGATGTCCAACTTGCCGCCGATACGTGTGCGTGTAGAGGAGGCGGAGGTCAGAGTTCAAGATCCCAAAGTGGGATTTGAAGAGCAATTTGGGCAGATGCATTTTGGTGTGCCTCCAATTCCTACTGCGTTGGCTGCTGCTGCAGCTGTTTCATTGGCTGCTGTTTCTAATCACGAGAATGCCAATCGGGTCTTTAACGACGACGAGAGAGCGGAGCAGGGAGGTCCGGTGGCGTTCCGGAAGCCTCCATTGCCATTGCAAACCTTGCAAAACAGGACTGTTGTTAGTCCTGCTGTTAGCGGTGGTTTTAGTCTACCGTCGCCGGATTCTGTTGCCAGCGACAGTAGCATAACATCTGCAAATTCTCAGTCCAAACCCATGTATTTCCAAGACCAAATTGTAAGAGACAGCTCAGTCCCAGCCATTCCCATCGCAGAAAGCGATGGTTTCATGACAAGTCAACAAGTACAAATTCAACAGCTCCATGACCCTGCCTATGTATTAACCTCACAATTAGATCAGAAGCAGCCACAACAACCACAACAATTCGTCCACAGCACCACCCATTACATCCATCACCAATACCCTGCAGCCGCGGGGCATGTCCCCGTTCCATCGTATTATCATCCTGTTTACACGCAAACACCATCTCAACAGCAACTCCATCATCCTATTGATCAGCAATATCCAGTCTATTTAATGCCCATTACGCAAAATCAACCAACCTACAATATGCCTGTTCAATCTAGTCCTGCTGAGACTCCAATGGCTGCACCCAACCGGCAAGCATCAGCTAGTCCTACCATTGTCGCTTCTCCAGTTGCTTACAATGATAGTAATAATCAACAGCCCTTCTATCCTCAGAAGACAGTTCCAGCAGCTATGCCAGAAATGGCTGCAAGCATGTATAGGACTGCAGTAACCACGACTCCTCCTCCTTTATTACAGGTTTCTCACAATCAGTTCCAGCAACCATACATGGGTCTTTCCCAAATGAACTATCCACCTCAGTCTATAGCCATTGCTCCCGCACCCTCCGGTGCTGCTAATTATGGTTTTGATTACACTAACGCTCCAGCGCAGAATATCCCGGCTACCCCAATGTCTTCTCAGTACCAAACTATGACTCATGCAGCCGCGGCAGCAGCTCTATCAGATGCGTCTAGACAGCTTCCTTCAGATGGCTCACAGCAGCAGCAGACCAGGAACTCTCGCATTGAAACGTTAGATACAGAGATCATCGCTCGAGACATCAATTGCACCGGCACCAAATTCGCTTCGGGAGCACTTGCAGAATCTTCCATCGACGGCGAACCGTTGCCGGACGAGAAGAGCCTGAATCGAGACCTGGCTGGGGATGAAACCAAGCATGGAGGAAAGGCATTAGGCTTACGGTTCGTTGCTTACTCCGTCGCGATCCAGTCGTTGAACAGCGACGGCTATCAAAGTCCCCAAATTCACCATTCAAATCCCCTTGAGAACACTCTCATGAGTTCCACTGGGTTCTTTATGCCATTGGAATCCGATACTGCGTCCAGATACTGTCCATTATTCGAGGTTCGAAGCAACCGGAAGGAGAAATCATCGATACCCATTTCGCGGTTGTGTGTGAAAATGAAGGCGGCGACAGTACCGTTCGAGTCAGGAATGAGCTTCGGGTTCAAGGATTTGATGAAAACGTTCACAGTGAATGTGCAGAGAGCAGAAAGTAGGGCACTGAATGTTCCATTGTTTGAGCCGTTTACGATTGCATCTTCGAGGCTTGAAATGGTGGAGAACGTAGCGATAAGGATCGAGTTGAGTAATGGGTGCGTCGGATGGGGTGAGGCGCCGATTTTGCCTTTTGTCACTGCGGAGGATCAGCCTACCGCGATAACGAAGGCAGGGGAGGTTGGGGAACTATTGCAGCAGAGACCACCGTGTAATTTGGGCTCAGCGATGATGCAGATCGGCGAGACTCTTCCTGGCCATGAATTTGCTTCTGTTAGAGCAGGAGTTGAGATGGCGTTGATTGATGCAGTTGCCAACAGCATTAACATACCTCTATGGAGATTGTTTGGTGGTGTTTCAAACAGTATAACCACCGACATAACAATTCCTATAACTTCTGCTTCTAATGCTGCAAAATTGGCTGCAAAATATCGTGATCAAGGATTCAAGACTTTGAAGTTAAAGGTAGGAAAGGATCTAAGAGCTGATATTGAAGTTCTGCAGCGCATCAGAACGGTTCATTCTGATTGCAAATTCATCCTGGATGCCAATGAGGGATATGAAACTGAGGAAGCTATTCAAGTTCTTGATAAGTTACATGAATTGGGGGTGACTCCGACTCTGTTTGAACAACCAGTTCATAGAGACAACTGGGAGGGTCTCGGAATTGTTAGTCGCATCGCAAGAGATACATACGGGGTATCTGTGGCAGCTGATGAGAGCTGCCGGAGTTTAAGTGATGTTAAGAGAATAGTGGAAGAGGATCTTGCAGGTGTTATAAATATAAAGCTTGCCAAAGATGGAGTTTTGGGGGCAATTGAAATTATTGAAGTAGCAAGGGCTGCTGGATTGAGTTTAATGATTGGTGGTATGATAGAGACTCGACTTGCCATGGGCTTTTCCGGTCATCTTGCTGCTGGTCTCGGATACATCGACTTAGATACACCACTTTTATTGTCAGAAGATCCAGTTCATGGGGGTTATGAAGTTTCTGGTGCTGTCTACAAGTTCACAAATGCCAGAGGCCATGGTGGTTTCCTTCACTGGGATAGCCTTGCTTGGTAA 3588 48.8 MDPPPPPAATAATAAATAAANFAATAIQHNYQDSIESSPRSNNADSWDDPLPPVPGAKLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLSDLCMRLSRTLLNGRPFTLKYQLPHEDLDSLISIATDEDLENMIEEYDRITMASPLKPLRIRLFIFFTKPETVASMGSLLDDAKHETWFVDALNSSAGMIPRGLSDSATMECMVNLDAVRGSDSCNDLENQGHDSLGHIDKQVEKNSNSAHDVQSIPDSPAVENDSSFGSSSSVPSMSNLPPIRVRVEEAEVRVQDPKVGFEEQFGQMHFGVPPIPTALAAAAAVSLAAVSNHENANRVFNDDERAEQGGPVAFRKPPLPLQTLQNRTVVSPAVSGGFSLPSPDSVASDSSITSANSQSKPMYFQDQIVRDSSVPAIPIAESDGFMTSQQVQIQQLHDPAYVLTSQLDQKQPQQPQQFVHSTTHYIHHQYPAAAGHVPVPSYYHPVYTQTPSQQQLHHPIDQQYPVYLMPITQNQPTYNMPVQSSPAETPMAAPNRQASASPTIVASPVAYNDSNNQQPFYPQKTVPAAMPEMAASMYRTAVTTTPPPLLQVSHNQFQQPYMGLSQMNYPPQSIAIAPAPSGAANYGFDYTNAPAQNIPATPMSSQYQTMTHAAAAAALSDASRQLPSDGSQQQQTRNSRIETLDTEIIARDINCTGTKFASGALAESSIDGEPLPDEKSLNRDLAGDETKHGGKALGLRFVAYSVAIQSLNSDGYQSPQIHHSNPLENTLMSSTGFFMPLESDTASRYCPLFEVRSNRKEKSSIPISRLCVKMKAATVPFESGMSFGFKDLMKTFTVNVQRAESRALNVPLFEPFTIASSRLEMVENVAIRIELSNGCVGWGEAPILPFVTAEDQPTAITKAGEVGELLQQRPPCNLGSAMMQIGETLPGHEFASVRAGVEMALIDAVANSINIPLWRLFGGVSNSITTDITIPITSASNAAKLAAKYRDQGFKTLKLKVGKDLRADIEVLQRIRTVHSDCKFILDANEGYETEEAIQVLDKLHELGVTPTLFEQPVHRDNWEGLGIVSRIARDTYGVSVAADESCRSLSDVKRIVEEDLAGVINIKLAKDGVLGAIEIIEVARAAGLSLMIGGMIETRLAMGFSGHLAAGLGYIDLDTPLLLSEDPVHGGYEVSGAVYKFTNARGHGGFLHWDSLAW 1195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1435374 1443888 - CmaCh11G002890.1 Cma11g00289 302798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00289 1195 SFLD muconate cycloisomerase 836 1186 - -
Cma11g00289 1195 Pfam Enolase C-terminal domain-like 980 1185 IPR029065 -
Cma11g00289 1195 Gene3D - 78 161 - -
Cma11g00289 1195 MobiDBLite consensus disorder prediction 31 51 - -
Cma11g00289 1195 ProSiteProfiles PB1 domain profile. 58 162 IPR000270 GO:0005515
Cma11g00289 1195 SFLD Enolase 836 1186 - -
Cma11g00289 1195 SUPERFAMILY Enolase N-terminal domain-like 835 959 IPR029017 -
Cma11g00289 1195 PANTHER OS05G0427100 PROTEIN-RELATED 1 670 - -
Cma11g00289 1195 MobiDBLite consensus disorder prediction 31 45 - -
Cma11g00289 1195 Pfam Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 846 958 IPR013341 -
Cma11g00289 1195 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 1 670 - -
Cma11g00289 1195 MobiDBLite consensus disorder prediction 660 677 - -
Cma11g00289 1195 MobiDBLite consensus disorder prediction 244 275 - -
Cma11g00289 1195 MobiDBLite consensus disorder prediction 376 395 - -
Cma11g00289 1195 MobiDBLite consensus disorder prediction 377 395 - -
Cma11g00289 1195 SUPERFAMILY CAD & PB1 domains 74 173 - -
Cma11g00289 1195 MobiDBLite consensus disorder prediction 704 723 - -
Cma11g00289 1195 MobiDBLite consensus disorder prediction 654 677 - -
Cma11g00289 1195 SMART MR_MLE_2 975 1069 IPR013342 -
Cma11g00289 1195 SMART PB1_new 73 162 IPR000270 GO:0005515
Cma11g00289 1195 Pfam PB1 domain 74 162 IPR000270 GO:0005515
Cma11g00289 1195 Gene3D - 950 1180 IPR036849 -
Cma11g00289 1195 Gene3D - 843 949 IPR029017 -
Cma11g00289 1195 MobiDBLite consensus disorder prediction 240 276 - -
Cma11g00289 1195 CDD PB1_UP2 62 162 - -
Cma11g00289 1195 SUPERFAMILY Enolase C-terminal domain-like 949 1194 IPR036849 -
Cma11g00289 1195 CDD L-Ala-DL-Glu_epimerase 838 1160 IPR034603 GO:0016855
Cma11g00289 1195 MobiDBLite consensus disorder prediction 708 723 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00289 - - - cpep:111792366 1243.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02988 Cma-Chr4:19573871 Cma11g00289 Cma-Chr11:1435374 8.90E-31 dispersed
Cma11g00289 Cma-Chr11:1435374 Cma15g00063 Cma-Chr15:314645 6.31E-35 dispersed
Cma15g00055 Cma-Chr15:286392 Cma11g00289 Cma-Chr11:1435374 6.39E-29 transposed
Cma15g00056 Cma-Chr15:287277 Cma11g00289 Cma-Chr11:1435374 1.58E-80 transposed
Cma10g00310 Cma-Chr10:1407510 Cma11g00289 Cma-Chr11:1435374 0 wgd
Cma11g00289 Cma-Chr11:1435374 Cma18g00994 Cma-Chr18:8381735 1.96E-124 wgd
Cma11g00289 Cma-Chr11:1435374 Cma04g01486 Cma-Chr4:7566680 1.44E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g284 . . . . . . . . . . . Cma11g00289 . Car11g00263 . . Cpe04g01391 . . . . . . . Cla06g01449 Cam06g1602 Cec06g1664 Cco06g1658 Clacu06g1567 Cmu06g1520 Cre06g2331 . . . . . . . . . . . . . . . . . . Cmo11g00292 . . . . . . . . . . . . . . . . . . . . Lsi06g01315 Csa01g00401 Chy02g02348 Cme02g01725
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009839 1 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00289 Cma_Chr11 FPKM 18.753557 21.659632 3.651896 4.285931 6.072515 5.609216 5.096869 1.795712 1.584889 1.612693