Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00294 ATGGCCGATAGCGCTAAATCAGTTCTCGAAGAGGAAACTTCGAAGCTTGAAACCAAATCCAAGCGCGGCGTAGATGTCGAGGATGCTGATGTCACTGTGAAGAAGTTTAAAACGGAAGCTACTGCCGGTGTAGCCGACAAAACTGGAGACTGTACCGGCAGGAAGTTGGAAGCTGTTAATGGTGATGAAGAAAATAAGGTCATCAGGATGGGAGTCAAGTTTGAGATTGAAGCGGATGCAGCAGAAGATAAAGGGTCCAGGCATACAATGGAGGATGCTTGGGTTTTGCTTTTGGATGCGAGCTTGGATTTTCCTGGGAAATTGAGATGTGCACATTTTGCTATCTATGATGGACATGGAGGTCGGTTAGCTGCCGAATACGCTCAAAAGCATTTGCATATGAATGTTCTCTCAGCCGGGTTACCACGTGAGTTGTTGGATGTAAAAGCAACTAAAAAGGCAATACTTGATGGGTTCCGGAAAACTGATGAGTCTCTTCTTCAAGAAAGTTCTGCTGGGGGATGGCAGGATGGTGCTACTGCTGTTTGCGTTTGGGTATTAGGTCAAACGGTTTTTGTTGCTAATGTTGGTGATGCTAAAGCAGTTGTAGCACGATCTTCGACTACTGATAAATTGTCTAATAATCTTAATGGAGGAAGCTCTTTAAAGGCTATTGTTTTGACAAGGGAACACAAGGCAATCTACCCACAAGAAAGAGCTCGTATTCAAAAGGCTGGTGGCGTTGTTGGTTCAAATGGTCGATTGCAGGGCCGTCTTGAAGTTTCTCGGGCACTCGGAGATCGCCAATTTAAAAAGTTGGGCGTTATTGCAACTCCAGACATTCATTCTTTTGAATTGACTGCTAGGGAGCATTTTATCATCCTCGGATGTGATGGACTTTGGGGGGTTTTTGGACCAAGCGATGCTGTCGATTTTGTCCAGAAATTATTGCAGGAGGGCTTGCCCATAACATCAGTAAGTCGACGTCTTGTGAGGGAAGCTATTCGTGAACGGCGCTGTAAAGATAACTGTACTGCAATGGTCATTGTTTTCAGGCCCAAGTAA 1065 44.98 MADSAKSVLEEETSKLETKSKRGVDVEDADVTVKKFKTEATAGVADKTGDCTGRKLEAVNGDEENKVIRMGVKFEIEADAAEDKGSRHTMEDAWVLLLDASLDFPGKLRCAHFAIYDGHGGRLAAEYAQKHLHMNVLSAGLPRELLDVKATKKAILDGFRKTDESLLQESSAGGWQDGATAVCVWVLGQTVFVANVGDAKAVVARSSTTDKLSNNLNGGSSLKAIVLTREHKAIYPQERARIQKAGGVVGSNGRLQGRLEVSRALGDRQFKKLGVIATPDIHSFELTAREHFIILGCDGLWGVFGPSDAVDFVQKLLQEGLPITSVSRRLVREAIRERRCKDNCTAMVIVFRPK 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1455272 1463937 + CmaCh11G002940.1 Cma11g00294 302803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00294 354 SUPERFAMILY PP2C-like 71 352 IPR036457 -
Cma11g00294 354 SMART PP2C_4 59 349 IPR001932 -
Cma11g00294 354 PANTHER INTEGRIN-LINKED KINASE-ASSOCIATED SERINE/THREONINE PHOSPHATASE 2C 18 348 - -
Cma11g00294 354 MobiDBLite consensus disorder prediction 1 22 - -
Cma11g00294 354 CDD PP2Cc 81 351 IPR001932 -
Cma11g00294 354 Pfam Protein phosphatase 2C 81 340 IPR001932 -
Cma11g00294 354 ProSiteProfiles PPM-type phosphatase domain profile. 77 351 IPR001932 -
Cma11g00294 354 PANTHER PROTEIN PHOSPHATASE 2C 18 348 IPR015655 GO:0004722|GO:0006470
Cma11g00294 354 Gene3D - 59 352 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00294 Cma-Chr11:1455272 Cma16g00066 Cma-Chr16:282142 1.88E-35 dispersed
Cma11g00294 Cma-Chr11:1455272 Cma09g00041 Cma-Chr9:172537 4.31E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00294 K17500 - csv:101216467 603.208