Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00296 ATGGAGAAAGATTCAAACTCCTCGTTGAAATCAGCCCTTCTTCACATTTCTGAAGATGGGTTGGATTCAAATGGCGAGAGAAGGAAGCTCATAGCAGAGGAAGTAAAGAAGCAGCTATGGCTTGCAGGGCCGCTGATTTTGGTCAGTCTTTTACAATACTGTTTGCAGATGATATCCGTCATGTTTGTGGGTCATCTTGGCGAGCTGCCCCTCTCCGGTGCTTCAATGGCGACTTCTTTTGCTTCAGTCACTGGTTTCAGCTTGTTGGTGGGTATGGCTAGTGCTCTGGATACATTTTGTGGCCAATCTTATGGAGCAAAGCAGTATCATATGCTGGGCATTCATATGCAAAGAGCAATGGTTGTTCTTTTACTTGTGAGTATACCTCTTGCAGTCATCTGGGCTAACACAGGAGAAATCCTGAAATTGCTTGGTCAAGATCCTGAAATTTCAGCAGAAGCTGGGAAATATGCTATTAGTATGATACCAAGCCTTTTCGCTTATGGTCTTCTTCAATGCCTTAATAGATTCTTACAGACCCAAAATGTTGTTTTCCCAATGGTTATGAGCTCTGGAATAGCTGCTTTGCTTCATATCCCCATATGTTGGGTTCTGATATTCAAAGTTGGACTTGAAATTCGAGGAGCTGCTGTGGCTAACTCCATCTCTTATTGGCTCAATGTGTTGATATTAACACTTTATGTTAAGTTTTCTTCTTCTTGTTCGAATTCTTGGAGTGGGTTTTCAGTGCAGGCTTTTCACAATATCCCATATTTCCTTAAACTTGCAATTCCTTCGGCTTGTATGGTTTGCTTGGAAATGTGGTCATTTGAGATGATGGTTCTTCTTTCTGGGCTTCTACCAAATCCAAAATTAGAGACATCAGTGCTTTCAATCAGTCTTAATACAGCTGCAACAGTTTGGATGATCCCATTTGGTTTGAGTGGTGCAGGAAGCACGCGAGTCTCAAATGAACTAGGAGCTGGCCATCCTGCAGCAGCAAAGCTTGCTGGGAAAGTAGTTATGACAATAGCCATTATTGAGGGGCTACTGCTTGGAATTGTCTTAATTCTTATACGTACTGTTTGGGGCTATGCTTATAGCAACGAACGAGAAGTGGTCGAATATGTAGCCAACATGCTTCCTTTAGTTGCAGCTTCCAATTTTGTTGATGGACTTCAATGCGTCCTTTCAGGCATTGCTAGAGGATGTGGTTGGCAGAAGATTGGTGCATACGTGAATCTTGGATCATATTATATTGTGGGAATTCCATCTGCAGTTTTGCTTGCTTTTGTTTTGCACATTGGTGGAAGGGGGCTGTGGTTAGGCATCATTTGTGCACTCATTGTCCAAGCACTTTCTCTTGCTATCATTACCATCCGCACCAACTGGGACCAAGAAGCAAAGATAGCTACAGAACGTGTGTATGACACTGTAATCCCAGTGAACGTTGTCTCTTGA 1461 42.71 MEKDSNSSLKSALLHISEDGLDSNGERRKLIAEEVKKQLWLAGPLILVSLLQYCLQMISVMFVGHLGELPLSGASMATSFASVTGFSLLVGMASALDTFCGQSYGAKQYHMLGIHMQRAMVVLLLVSIPLAVIWANTGEILKLLGQDPEISAEAGKYAISMIPSLFAYGLLQCLNRFLQTQNVVFPMVMSSGIAALLHIPICWVLIFKVGLEIRGAAVANSISYWLNVLILTLYVKFSSSCSNSWSGFSVQAFHNIPYFLKLAIPSACMVCLEMWSFEMMVLLSGLLPNPKLETSVLSISLNTAATVWMIPFGLSGAGSTRVSNELGAGHPAAAKLAGKVVMTIAIIEGLLLGIVLILIRTVWGYAYSNEREVVEYVANMLPLVAASNFVDGLQCVLSGIARGCGWQKIGAYVNLGSYYIVGIPSAVLLAFVLHIGGRGLWLGIICALIVQALSLAIITIRTNWDQEAKIATERVYDTVIPVNVVS 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1469380 1472250 + CmaCh11G002960.1 Cma11g00296 302805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00296 486 PANTHER PROTEIN DETOXIFICATION 26 474 - -
Cma11g00296 486 PANTHER MULTIDRUG RESISTANCE PROTEIN 26 474 - -
Cma11g00296 486 TIGRFAM matE: MATE efflux family protein 44 441 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma11g00296 486 Pfam MatE 265 427 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma11g00296 486 Pfam MatE 44 204 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma11g00296 486 CDD MATE_eukaryotic 34 469 IPR045069 GO:0042910|GO:1990961
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00296 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101205241 815.839
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00317 Cma-Chr10:1445211 Cma11g00296 Cma-Chr11:1469380 8.61E-27 dispersed
Cma11g00296 Cma-Chr11:1469380 Cma19g00924 Cma-Chr19:8294772 1.58E-108 dispersed
Cma16g00400 Cma-Chr16:1988139 Cma11g00296 Cma-Chr11:1469380 3.95E-107 dispersed
Cma16g00401 Cma-Chr16:1992877 Cma11g00296 Cma-Chr11:1469380 2.90E-79 dispersed
Cma11g00296 Cma-Chr11:1469380 Cma11g00297 Cma-Chr11:1473820 0 tandem
Cma09g00855 Cma-Chr9:4194180 Cma11g00296 Cma-Chr11:1469380 2.35E-119 transposed
Cma11g00069 Cma-Chr11:339242 Cma11g00296 Cma-Chr11:1469380 4.34E-113 transposed
Cma10g00316 Cma-Chr10:1436992 Cma11g00296 Cma-Chr11:1469380 0 wgd
Cma11g00296 Cma-Chr11:1469380 Cma18g00986 Cma-Chr18:8314258 2.14E-159 wgd
Cma11g00296 Cma-Chr11:1469380 Cma04g01475 Cma-Chr4:7510568 6.67E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g256 . . . . . . . . . . . Cma11g00296 . . . . Cpe04g01386 Bhi02g00113 . . . . . . . . . . . . . . . . . . . . . . Blo15g00062 . . . . . . . Cmo10g00339 Cmo11g00301 . . . . . . . . . . . . . . . . . . . . . Csa01g00418 Chy02g02328 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000257 4 6 1 5 3 6 0 7 6 5 4 6 6 6 5 5 6 3 3 7 7 4 2 7 6 4 3 8 8 10 153
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00296 Cma_Chr11 FPKM 5.36345 6.02097 18.63669 18.500519 2.5753 3.535721 3.898079 20.554174 19.810925 21.91876