Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00297 ATGGAGAGAGATCAGGAGTCGTGGTTGAAGTCGCCCCTAATTCACATATCTGAAGATGAAGTGAATCTGAAAGACGGGGGACTAGTAGATGATAACAATTTCTCAAGAAAACTAATAGCCGAGGAAGTAAAGAAGCAGCTATGGCTAGCAGGACCTCTCATATCGGTCAGTTTTCTGCAATACTGTTTGCAGATGATTTCCATCATGTTTGTGGGTCATCTCGGCGAATTGCCTCTCTCCGGTGCTTCCATGGCCGTTTCTTTTACATCGGTGACTGGTTTCACCGTCTTGATGGGGATGGCTAGTGCTCTGGATACGTTTTGTGGCCAATCTTATGGAGCAAAGCAGTACCACATGTTGGGCATCTATATGCAAAGAGCAATGTTTGTTCTTTCACTTGTGAGCATACCTCTTGCAGTCATCTGGGCTAACACAGGAGAAATCCTGAAATTACTTGGCCAAGATGCTCAAATTTCAGCAGAAGCTGGGAAATATGCTAAATGCTTGATTCCATGCCTTTTTGCTCATGGTCTTGTTCAGTGCCTGAACCGATTTTTACAGACCCAAAACATTGTTTTCCCAATGATGATGAGTTCTGGAATAGCAGCTTTGCTTCACATTGCCCTCTGTTGGGTTATGATATTCAAAGCTGGGCTTGAAACTCGAGGAGCTGCTTTGGCAAACTCCATTTCTTATTGGATCAATGCATTGATATTGATACTTTATGTTAAGTTTTCTTCTTCATGTTCAGAGTCTTGGACTGGCTTTTCAGCGCAGGCATTTCACAACATCTCGTATTTCCTTAAACTTGCAATCCCTTCAACTGTCATGGTTTGCTTGGAACTGTGGTCATTCGAGATGGTGGTTCTTCTGTCTGGACTTCTACCAAATCCAAAATTAGAGACATCAGTGCTTTCTATTAGCCTTAATACAGATTTAACCGTTTGGATGATACCAATGGGTCTGAGTGCTGCTGCTAGCACGCGAGTTTCAAATGAACTGGGAGCTGGCCGTCCTGCAGGTGCAAAGCTAGCAGCGTGTCTAGTTATGACAATAGCCGTTATTGAGGGACTACTGCTTGGGACTGTCTTGATTCTTATACGAAATGTTTGGGGTTATGCATATAGCAATGAACAAGAAGTGGTCAAATATGTTGCGGATATAGTTCCCATAATTGCAGTGTCCACTTTTTTCGATGGACTTCAGTGTGTTCTTTCAGGCATTGTTAGAGGATGTGGTTGGCAGAAAATTGGGGCATATGTCAATCTTGGATCGTATTATCTTGTGGGTATTCCGTCTGCAGTTTTGCTTGCTTTTGTCTTGCACATTGATGGAAAGGGGCTGTGGTTAGGCATCATCTGTGCACTTGCTGTCCAAACACTTTCTCTTGCTATCATTACCATCCGCACCAACTGGGACGAAGAAGCAAAGATAGCTGCAGAACGAGTGTACGAGTCAGTCATTCCAACGAACGTCATCGCATGA 1485 43.57 MERDQESWLKSPLIHISEDEVNLKDGGLVDDNNFSRKLIAEEVKKQLWLAGPLISVSFLQYCLQMISIMFVGHLGELPLSGASMAVSFTSVTGFTVLMGMASALDTFCGQSYGAKQYHMLGIYMQRAMFVLSLVSIPLAVIWANTGEILKLLGQDAQISAEAGKYAKCLIPCLFAHGLVQCLNRFLQTQNIVFPMMMSSGIAALLHIALCWVMIFKAGLETRGAALANSISYWINALILILYVKFSSSCSESWTGFSAQAFHNISYFLKLAIPSTVMVCLELWSFEMVVLLSGLLPNPKLETSVLSISLNTDLTVWMIPMGLSAAASTRVSNELGAGRPAGAKLAACLVMTIAVIEGLLLGTVLILIRNVWGYAYSNEQEVVKYVADIVPIIAVSTFFDGLQCVLSGIVRGCGWQKIGAYVNLGSYYLVGIPSAVLLAFVLHIDGKGLWLGIICALAVQTLSLAIITIRTNWDEEAKIAAERVYESVIPTNVIA 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1473820 1476583 + CmaCh11G002970.1 Cma11g00297 302806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00297 494 CDD MATE_eukaryotic 42 477 IPR045069 GO:0042910|GO:1990961
Cma11g00297 494 TIGRFAM matE: MATE efflux family protein 52 449 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma11g00297 494 Pfam MatE 52 212 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma11g00297 494 Pfam MatE 273 435 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma11g00297 494 PANTHER PROTEIN DETOXIFICATION 33 482 - -
Cma11g00297 494 PANTHER MULTIDRUG RESISTANCE PROTEIN 33 482 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00297 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101217888 853.588
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00316 Cma11g00297 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01475 Cma-Chr4:7510568 Cma11g00297 Cma-Chr11:1473820 7.84E-152 dispersed
Cma09g01257 Cma-Chr9:8445003 Cma11g00297 Cma-Chr11:1473820 1.77E-12 dispersed
Cma10g00316 Cma-Chr10:1436992 Cma11g00297 Cma-Chr11:1473820 0 dispersed
Cma10g00318 Cma-Chr10:1445748 Cma11g00297 Cma-Chr11:1473820 1.08E-78 dispersed
Cma11g00068 Cma-Chr11:338172 Cma11g00297 Cma-Chr11:1473820 4.40E-34 dispersed
Cma11g00069 Cma-Chr11:339242 Cma11g00297 Cma-Chr11:1473820 1.60E-113 dispersed
Cma11g00297 Cma-Chr11:1473820 Cma18g00986 Cma-Chr18:8314258 7.09E-156 dispersed
Cma11g00296 Cma-Chr11:1469380 Cma11g00297 Cma-Chr11:1473820 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g255 . . . . . . . . . . Cma10g00316 Cma11g00297 . . . . . Bhi02g00115 . . . Hepe09g0239 . . Cla06g01437 Cam06g1592 Cec06g1652 Cco06g1644 Clacu06g1553 Cmu06g1508 Cre06g2318 . . . . . . . . . . . . Bpe07g01043 . . . . Cmo10g00340 Cmo11g00302 . . . . . . . . . . . . . . . . . . . . . Csa01g00419 Chy02g02327 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000257 4 6 1 5 3 6 0 7 6 5 4 6 6 6 5 5 6 3 3 7 7 4 2 7 6 4 3 8 8 10 153
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00297 Cma_Chr11 FPKM 13.046498 12.301401 10.394386 9.97584 10.515055 11.55626 11.654758 8.497301 9.118433 9.220818