Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00298 ATGGCTGAGCTCGATCCATCAAAGAAAGTGGCCGACAGATATTTAAAGCGTGAGGTTCTCGGAGAGGGTACCTATGGCGTTGTATATAAGGCCATTGATACCCAGACAGGTCAGACGGTTGCAATCAAGAAAATTCGGCTTGGCAAACAAAAAGAGGGAGTAAATTTTACGGCTCTTCGAGAAATCAAGCTGCTTAAAGAGCTCAAAGATTCAAATATAATTGAGTTAATTGATGCATTCCCTCATAAAGAAAATTTGCATCTTGTTTTTGAATTTATGGAGACGGACCTTGAAGCTGTTATACGTGATCGAAATATATTTCTTTCCCCTGCTGACATAAAATCATACCTTCAGATGACGTTGAAAGGTCTTGCTTTTTGCCACAAGAAGTGGGTTTTACATAGGGATATGAAGCCAAATAATTTGTTGATAGGACCGAATGGTCAACTGAAACTTGCAGATTTTGGTTTGGCTAGGATATTTGGGAGTCCTGATCGTAGATATACTCACCAGGTGTTTGCCCGATGGTACAGAGCACCTGAGCTATTGTTTGGCTCTAAGCAGTATGGTTCTGCAGTGGATGTTTGGGCAGCAGCTTGTATTTTTGCTGAACTACTACTTCGTAGACCTTTTCTTCAGGGTTCGAGCGACATTGATCAATTAGGGAAGATCTTTGCAGCTTTTGGAACTCCGACAACTTCTCAGTGGTCTGATATGTTATACCTACCTGATTATGTGGAGTTCCAATATGTTCCTGCACCTCCTCTACGTTCATTGTTTCCTATGGCTAGTGATGACACGCTGGATCTCCTATCAAAGATGTTTGCTTATGATCCAAAGTCTAGAATTTCCATTCAGCAAGCATTGGAGCATAGGTACTTCACATCTGCACCACTTCCCACAGATCCTAGTAAGCTTCCAAGGCCTACTTCAAAGCGTGAACCTATGAACCCTAGAGTTTCAGACTTAAATTCAAATGAGGGTCCTACTGTCCTCTCACCTCCAAGAAAGTCAAGAAGAGTAATGCCAGAGCGTGAGGCTTTTGAAGGAAATGTATGTAGAGCTGATAAGCTTGATGACCATGGTAATGAGGTGCGAGAGGCAGCTGCTGGAAATACAAGCAAAAATGAAGCAGTGCCAATGTCGTTGGATTTTTCTATTTTTGGTGGAAAACCTCCAAATAGACCAACAATTAACAGTGCTGACCGATCACATCTTAAAAGGAAATTAGATCTTGAATTCCAGCAATAA 1251 41.57 MAELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDSNIIELIDAFPHKENLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAFCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRYTHQVFARWYRAPELLFGSKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTTSQWSDMLYLPDYVEFQYVPAPPLRSLFPMASDDTLDLLSKMFAYDPKSRISIQQALEHRYFTSAPLPTDPSKLPRPTSKREPMNPRVSDLNSNEGPTVLSPPRKSRRVMPEREAFEGNVCRADKLDDHGNEVREAAAGNTSKNEAVPMSLDFSIFGGKPPNRPTINSADRSHLKRKLDLEFQQ 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1477703 1481876 - CmaCh11G002980.1 Cma11g00298 302807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00298 416 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Cma11g00298 416 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Cma11g00298 416 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 360 - -
Cma11g00298 416 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Cma11g00298 416 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00298 416 PANTHER CELL DIVISION PROTEIN KINASE 9 360 - -
Cma11g00298 416 MobiDBLite consensus disorder prediction 317 332 - -
Cma11g00298 416 MobiDBLite consensus disorder prediction 296 341 - -
Cma11g00298 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Cma11g00298 416 Gene3D Phosphorylase Kinase; domain 1 10 94 - -
Cma11g00298 416 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Cma11g00298 416 MobiDBLite consensus disorder prediction 384 405 - -
Cma11g00298 416 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00298 416 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00319 Cma11g00298 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01346 Cma-Chr5:10166568 Cma11g00298 Cma-Chr11:1477703 1.41E-20 dispersed
Cma06g00604 Cma-Chr6:2923248 Cma11g00298 Cma-Chr11:1477703 1.06E-63 dispersed
Cma11g00298 Cma-Chr11:1477703 Cma05g00076 Cma-Chr5:321607 3.90E-78 dispersed
Cma12g01259 Cma-Chr12:9818409 Cma11g00298 Cma-Chr11:1477703 2.90E-20 dispersed
Cma16g01213 Cma-Chr16:9188317 Cma11g00298 Cma-Chr11:1477703 1.19E-64 dispersed
Cma10g00319 Cma-Chr10:1447108 Cma11g00298 Cma-Chr11:1477703 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68875 PF00069 Pkinase 2.90E-72 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00298 K02202 - csv:101217645 793.882