Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00298 | ATGGCTGAGCTCGATCCATCAAAGAAAGTGGCCGACAGATATTTAAAGCGTGAGGTTCTCGGAGAGGGTACCTATGGCGTTGTATATAAGGCCATTGATACCCAGACAGGTCAGACGGTTGCAATCAAGAAAATTCGGCTTGGCAAACAAAAAGAGGGAGTAAATTTTACGGCTCTTCGAGAAATCAAGCTGCTTAAAGAGCTCAAAGATTCAAATATAATTGAGTTAATTGATGCATTCCCTCATAAAGAAAATTTGCATCTTGTTTTTGAATTTATGGAGACGGACCTTGAAGCTGTTATACGTGATCGAAATATATTTCTTTCCCCTGCTGACATAAAATCATACCTTCAGATGACGTTGAAAGGTCTTGCTTTTTGCCACAAGAAGTGGGTTTTACATAGGGATATGAAGCCAAATAATTTGTTGATAGGACCGAATGGTCAACTGAAACTTGCAGATTTTGGTTTGGCTAGGATATTTGGGAGTCCTGATCGTAGATATACTCACCAGGTGTTTGCCCGATGGTACAGAGCACCTGAGCTATTGTTTGGCTCTAAGCAGTATGGTTCTGCAGTGGATGTTTGGGCAGCAGCTTGTATTTTTGCTGAACTACTACTTCGTAGACCTTTTCTTCAGGGTTCGAGCGACATTGATCAATTAGGGAAGATCTTTGCAGCTTTTGGAACTCCGACAACTTCTCAGTGGTCTGATATGTTATACCTACCTGATTATGTGGAGTTCCAATATGTTCCTGCACCTCCTCTACGTTCATTGTTTCCTATGGCTAGTGATGACACGCTGGATCTCCTATCAAAGATGTTTGCTTATGATCCAAAGTCTAGAATTTCCATTCAGCAAGCATTGGAGCATAGGTACTTCACATCTGCACCACTTCCCACAGATCCTAGTAAGCTTCCAAGGCCTACTTCAAAGCGTGAACCTATGAACCCTAGAGTTTCAGACTTAAATTCAAATGAGGGTCCTACTGTCCTCTCACCTCCAAGAAAGTCAAGAAGAGTAATGCCAGAGCGTGAGGCTTTTGAAGGAAATGTATGTAGAGCTGATAAGCTTGATGACCATGGTAATGAGGTGCGAGAGGCAGCTGCTGGAAATACAAGCAAAAATGAAGCAGTGCCAATGTCGTTGGATTTTTCTATTTTTGGTGGAAAACCTCCAAATAGACCAACAATTAACAGTGCTGACCGATCACATCTTAAAAGGAAATTAGATCTTGAATTCCAGCAATAA | 1251 | 41.57 | MAELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDSNIIELIDAFPHKENLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAFCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRYTHQVFARWYRAPELLFGSKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTTSQWSDMLYLPDYVEFQYVPAPPLRSLFPMASDDTLDLLSKMFAYDPKSRISIQQALEHRYFTSAPLPTDPSKLPRPTSKREPMNPRVSDLNSNEGPTVLSPPRKSRRVMPEREAFEGNVCRADKLDDHGNEVREAAAGNTSKNEAVPMSLDFSIFGGKPPNRPTINSADRSHLKRKLDLEFQQ | 416 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1477703 | 1481876 | - | CmaCh11G002980.1 | Cma11g00298 | 302807 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00298 | 416 | CDD | STKc_CDK7 | 13 | 307 | IPR037770 | GO:0005675|GO:0008353|GO:0070985 | |
Cma11g00298 | 416 | Gene3D | Transferase(Phosphotransferase) domain 1 | 95 | 310 | - | - | |
Cma11g00298 | 416 | PANTHER | CYCLIN-DEPENDENT KINASE D-2 | 9 | 360 | - | - | |
Cma11g00298 | 416 | SUPERFAMILY | Protein kinase-like (PK-like) | 10 | 301 | IPR011009 | - | |
Cma11g00298 | 416 | Pfam | Protein kinase domain | 16 | 294 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g00298 | 416 | PANTHER | CELL DIVISION PROTEIN KINASE | 9 | 360 | - | - | |
Cma11g00298 | 416 | MobiDBLite | consensus disorder prediction | 317 | 332 | - | - | |
Cma11g00298 | 416 | MobiDBLite | consensus disorder prediction | 296 | 341 | - | - | |
Cma11g00298 | 416 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 132 | 144 | IPR008271 | GO:0004672|GO:0006468 | |
Cma11g00298 | 416 | Gene3D | Phosphorylase Kinase; domain 1 | 10 | 94 | - | - | |
Cma11g00298 | 416 | ProSitePatterns | Protein kinases ATP-binding region signature. | 20 | 44 | IPR017441 | GO:0005524 | |
Cma11g00298 | 416 | MobiDBLite | consensus disorder prediction | 384 | 405 | - | - | |
Cma11g00298 | 416 | ProSiteProfiles | Protein kinase domain profile. | 14 | 294 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g00298 | 416 | SMART | serkin_6 | 14 | 294 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00319 | Cma11g00298 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g01346 | Cma-Chr5:10166568 | Cma11g00298 | Cma-Chr11:1477703 | 1.41E-20 | dispersed | |
Cma06g00604 | Cma-Chr6:2923248 | Cma11g00298 | Cma-Chr11:1477703 | 1.06E-63 | dispersed | |
Cma11g00298 | Cma-Chr11:1477703 | Cma05g00076 | Cma-Chr5:321607 | 3.90E-78 | dispersed | |
Cma12g01259 | Cma-Chr12:9818409 | Cma11g00298 | Cma-Chr11:1477703 | 2.90E-20 | dispersed | |
Cma16g01213 | Cma-Chr16:9188317 | Cma11g00298 | Cma-Chr11:1477703 | 1.19E-64 | dispersed | |
Cma10g00319 | Cma-Chr10:1447108 | Cma11g00298 | Cma-Chr11:1477703 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68875 | PF00069 | Pkinase | 2.90E-72 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00298 | K02202 | - | csv:101217645 | 793.882 |