Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00299 ATGGCAGAGGTAAAGATTATTGGGTCAGCTGCAAGCCTCTTCTCTGTAAGGGTTGAATGGGCTTTGAAGCTCAAAGGAATTGAGTATGAGTACATACCGAAGACTGAGCTGCTTCTCAAGTCCAACCCTGTGTACAAAAAAATACCTGTGCTCTTGCACCATGACAAACCCATCTCCGAGTCGCTTCTCATCCTCGAATACATCGACGAGACGTGGAAGGACAACCCGCTCATACCTGAAGATCCATATAACAGAGCCATGGCTCGCTTCTGGGCTAAGCTTTTAGATGAGAAGGGCCTGCTGGGTGCCTGGGAAGCATGCCAGGCTGAAGGAGAAGAGAAGGAGAAGGCTGTGGAGGCTGCAATACAGAATTTGGCATTGCTTGACAAAGAAATCCAAGGAAAGAAATTCTTTGGTGGAGATGAAATTGGTTACCTGGATTTAGCTGCAGGGTGGATGTGCCACTGGCTCAGTGTTCTTGATGAAGTTGGAGAAATGAAGGTGTTTGATAAAGACAGGGTCCCATCCCTTCATGAATGGGTACAAAACTTCATACACATTCCAGTTATCAAAGAATCCCTTCCACCCAGAGAAGATCTTGTCAACTACTTCAAGGGGAGTCTGAGCTACGTCCGGTCGTTAGCTGAAAATAAGCAATAG 660 46.52 MAEVKIIGSAASLFSVRVEWALKLKGIEYEYIPKTELLLKSNPVYKKIPVLLHHDKPISESLLILEYIDETWKDNPLIPEDPYNRAMARFWAKLLDEKGLLGAWEACQAEGEEKEKAVEAAIQNLALLDKEIQGKKFFGGDEIGYLDLAAGWMCHWLSVLDEVGEMKVFDKDRVPSLHEWVQNFIHIPVIKESLPPREDLVNYFKGSLSYVRSLAENKQ 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1483599 1484338 + CmaCh11G002990.1 Cma11g00299 302808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00299 219 PANTHER GLUTATHIONE S-TRANSFERASE 1 216 - -
Cma11g00299 219 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 76 IPR004045 -
Cma11g00299 219 Gene3D - 81 212 - -
Cma11g00299 219 CDD GST_N_Tau 4 72 - -
Cma11g00299 219 SFLD Glutathione Transferase (cytosolic) 1 211 IPR040079 -
Cma11g00299 219 Pfam Glutathione S-transferase, C-terminal domain 113 182 - -
Cma11g00299 219 Pfam Glutathione S-transferase, N-terminal domain 13 70 IPR004045 -
Cma11g00299 219 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 216 IPR045073 -
Cma11g00299 219 Gene3D Glutaredoxin 1 80 - -
Cma11g00299 219 SUPERFAMILY Thioredoxin-like 4 97 IPR036249 -
Cma11g00299 219 SFLD Main.3: Omega- and Tau-like 1 211 IPR045073 -
Cma11g00299 219 SUPERFAMILY GST C-terminal domain-like 70 206 IPR036282 -
Cma11g00299 219 CDD GST_C_Tau 82 206 IPR045074 GO:0004364|GO:0006749
Cma11g00299 219 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 81 204 IPR010987 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00299 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101217418 384.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00299 Cma-Chr11:1483599 Cma14g01961 Cma-Chr14:13801828 1.41E-23 dispersed
Cma11g00299 Cma-Chr11:1483599 Cma03g00383 Cma-Chr3:4364137 6.20E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g252 . . . . . . . . . . . Cma11g00299 . . Sed08g0385 . . Bhi02g00117 Tan09g1846 Cmetu02g0734 . Hepe09g0371 . . Cla06g01435 Cam06g1590 Cec06g1650 Cco06g1642 Clacu06g1551 Cmu06g1506 Cre06g2315 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01302 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013759 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 3 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00299 Cma_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.30697 0.405149 0.402144