Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00302 ATGGCGGAAGGGCTCGTTCTCCGGGGAACGATGAGGGCTCACACGGATATGGTCACGGCCATAGCCACTCCGGTTGACAATTCCGATATGATCGTCACCTCTTCACGTGACAAATCCATCATCTTGTGGCGTCTCACTAAGGAGGAGAAGACCTACGGTGTTCCTCAGCGTAGGCTCAATGGCCACTCCCACTTCGTTCAGGATGTTGTTCTCTCTTCCGATGGCCAGTTCGCTCTCTCTGGTTCCTGGGACGGAGAGCTCCGCCTTTGGGACCTCGCCACCGGCGTTACCTCCCGTCGATTTGTTGGTCATTCGAAGGATGTTCTCTCTGTTGCCTTCTCCATTGACAATCGTCAGATCGTCTCGGCCTCTCGTGACCGAACGATCAAGCTATGGAATACACTCGGTGAGTGCAAGTACACAATCCAGGATGGTGACGCTCACAGTGACTGGGTTAGCTGTGTTAGATTCAGCCCTAACACTCTCTTGCCGACGATTGTTTCGGCGTCTTGGGACAAGACCGTGAAGGTTTGGAATTTGACCAATTGCAAGTTGAGAGTGACTCTTGCTGGTCATGCTGGTTATGTCAATACGGTGGCTGTCTCTCCTGATGGGTCGCTATGCGCTAGTGGAGGCAAAGACGGAGTGATTTTGCTATGGGATTTGGCCGAGGGTAAGAAGCTCTATTCATTGGATGCCGGATCGATTATTCATGCTCTTTGTTTCAGCCCCAACAGGTACTGGCTCTGTGCTGCGACCGAGAGCAGTATTAAGATCTGGGACTTGGAGAGCAAGAGCATCGTGGAGGACTTGAAAGTCGATTTAAAAACCGAGGCGGAGAAAACTGATGACACCCATGCTGCAACCGCCAACAAGATTAAGGTTATCTACTGCACAAGTTTGAGCTGGAGTGCAGATGGGAGCACATTGTTTAGTGGCTATACAGACGGAGTGATTAGAGTTTGGGGCATTGGTCGCTACTAG 984 51.32 MAEGLVLRGTMRAHTDMVTAIATPVDNSDMIVTSSRDKSIILWRLTKEEKTYGVPQRRLNGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGVTSRRFVGHSKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPNTLLPTIVSASWDKTVKVWNLTNCKLRVTLAGHAGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLDAGSIIHALCFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEAEKTDDTHAATANKIKVIYCTSLSWSADGSTLFSGYTDGVIRVWGIGRY 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1493377 1496169 + CmaCh11G003020.1 Cma11g00302 302811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00302 327 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Cma11g00302 327 CDD WD40 7 322 - -
Cma11g00302 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 327 IPR001680 GO:0005515
Cma11g00302 327 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 1 327 IPR045223 GO:0015935|GO:0043022
Cma11g00302 327 ProSitePatterns Trp-Asp (WD) repeats signature. 166 180 IPR019775 -
Cma11g00302 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 299 327 - -
Cma11g00302 327 SUPERFAMILY WD40 repeat-like 5 322 IPR036322 GO:0005515
Cma11g00302 327 Pfam WD domain, G-beta repeat 188 221 IPR001680 GO:0005515
Cma11g00302 327 Pfam WD domain, G-beta repeat 54 91 IPR001680 GO:0005515
Cma11g00302 327 Pfam WD domain, G-beta repeat 299 322 IPR001680 GO:0005515
Cma11g00302 327 Pfam WD domain, G-beta repeat 9 43 IPR001680 GO:0005515
Cma11g00302 327 Pfam WD domain, G-beta repeat 227 261 IPR001680 GO:0005515
Cma11g00302 327 Pfam WD domain, G-beta repeat 98 133 IPR001680 GO:0005515
Cma11g00302 327 Pfam WD domain, G-beta repeat 146 179 IPR001680 GO:0005515
Cma11g00302 327 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Cma11g00302 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 45 - -
Cma11g00302 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 95 - -
Cma11g00302 327 SMART WD40_4 182 221 IPR001680 GO:0005515
Cma11g00302 327 SMART WD40_4 224 261 IPR001680 GO:0005515
Cma11g00302 327 SMART WD40_4 289 323 IPR001680 GO:0005515
Cma11g00302 327 SMART WD40_4 52 91 IPR001680 GO:0005515
Cma11g00302 327 SMART WD40_4 94 133 IPR001680 GO:0005515
Cma11g00302 327 SMART WD40_4 4 44 IPR001680 GO:0005515
Cma11g00302 327 SMART WD40_4 135 179 IPR001680 GO:0005515
Cma11g00302 327 Gene3D - 4 327 IPR015943 GO:0005515
Cma11g00302 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 182 - -
Cma11g00302 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 133 IPR001680 GO:0005515
Cma11g00302 327 PANTHER BNAA06G12310D PROTEIN 1 327 - -
Cma11g00302 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 188 IPR001680 GO:0005515
Cma11g00302 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Cma11g00302 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Cma11g00302 327 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Cma11g00302 327 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Cma11g00302 327 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Cma11g00302 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 226 - -
Cma11g00302 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
Cma11g00302 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00321 Cma11g00302 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01778 Cma-Chr1:11921542 Cma11g00302 Cma-Chr11:1493377 4.06E-06 dispersed
Cma11g00302 Cma-Chr11:1493377 Cma08g00343 Cma-Chr8:1961797 1.97E-10 dispersed
Cma18g00508 Cma-Chr18:3042896 Cma11g00302 Cma-Chr11:1493377 3.35E-11 dispersed
Cma10g00320 Cma-Chr10:1458391 Cma11g00302 Cma-Chr11:1493377 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00302 K14753 - csv:101216713 656.751