Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00303 ATGTCTTCAATCCCACGAATCTTTTTGCTCTTCTCCCTCGGTTTCTCTCTTTTTCCCTCGTTTTTCTCTCTTCCCCATCCAGACCCACTTACAATCCGTCCATTTCAGGTCAACCAGTCGCCGCCAGCCACTATTCCGGCCTTCCCTGAACAATCCGACGTTCAGGGCTGCCCGTTAGACCTCCCTGATGAGCTCTTCCATGGGGTTAAGACTGCTTGTGGTCCTTCTAAAGGGGGTGTCTCCGGGGAGCTCCATCGCAGCCGTTGCTGTCCGGTCTTGGCCGCTTGGCTCTACGCTGCTTACTCCGCTACCGCATTGCAGAGAGCTGGACGACCCGGCGCAGCTGCTGGCCACACAGCGCCGTCGTATGACCTGCCGCTTCTACCGGATGACTCCGAAACTTGCGTCAGTAACTTGGATCAAGCGTTGAATCAAAGGGGAATCGAGCTAATGAAACCTAATGAGACTTGTGATGTGGTTTATTGCTATTGCGGCATAAGATTACACCCTTTGAGCTGCCCTGAAGCGTTTTCAGTGAACCAGAATGGGATTCTTGAAGGAGATAGAAATGTGAAGAGATTGGAGAGAAATTGCTTGAGCAGCGGTAATGTCAATGGATTTCCAGGGCTTGGTGGCTGTTCAAAATGCTTGAAAAGCCTTTATCAGCTCAACAACAAAGAAACTTTGAATTCAAGCAAGCCAGAGAACAGGACCACCAAGATGCACCACAAGGAGTGTCAGCTGATGGGTCTAACATGGCTTCTTGCCAAGAACCGAACGGGGTATATCCACACCATTACGTCGGTGCTTCGCGCTAAAATGATGAGCAAAGACGGGTCGGATCCTAAGTCGTGTACTCTCAACAGCGACGGAATGCCTCTGGCTGTCGATTCGGCCGAGATCTCAGGCAGTTCTGTGTCCACTCCAATTCAGGCATCACTGAATCTTGGCCTGGTTTGGGCTGGTTTGTTGTACAATATGATCATGTTGGGTTCAGAAATGATCTTTGTTCTCTGTGTTGATTGGAAAATGCCAAATTCTTTTCTGATATGCCCTCCGGTAAAAAAAAAACGCGGCGACTCTCTCGCCTTTCCCGGCAATTCTGTAAGAGCTCTCTTTCATTACCGTTATCGTCCTCTTCGTGAGCTTCACGGTCACAGTTCCAGATGCAACCACCTTCAAATTGATCTTCCTTTTCGCCATTTTCATCACATTTTCTTCTTATTCTTCTTCTTCTTCTTCTTCTTCTTCATCTCTCTTACCATGGCGACACCGGAGCTTTCTGAGACTTACGCATGCATGCCATCCACCGAGCGAGGCCGAGGAATTTTGATCTCCGGCCACCCTAAAACCAACTCTGTTCTCTACACCAATGGTCGATCCGTCATGATGCTCAATCTTGACAACCCGCTCGAGGTCTCTGTCTATGCCGAGCACGGGTATCCGGCTACGGTCGCCAGGTACTCGCCGAATGGGGAGTGGATTGCGTCTGCTGATGTGTCCGGGGTTATGAGGCTTTGGGGCACTCATAGTGGGTTTGTGCTCAAGAACGAGTATAAGGTTTTGTCTGGGCGGATCGATGATTTGCAATGGTCTCCTGATGGAATGAGGATTGTGGCTTGTGGTGAGGGAAAGGGGAAATCGTTCGTGCGTGCTTTTATGTGGGATTCGGGCTCGAATGTTGGCGAGTTTGATGGTCATTCTAGGCGTGTTTTAAGCTGTGCATTTAAGCCAACAAGACCCTTTCGCATTGCCACCTGCGGAGAGGATTTCCTAGTAAATTTTTATGAAGGACCGCCGTTTAGATTTAAGCAATCTCTTAGGGACCATTCAAATTTTGTCAACTGTATAAGGTTCTCTCCAGATGGCAGCAAGTTCATTAGTGTGAGCTCTGACAAGAAGGGTATATTATATGATGCGAAGACTGCGGATAAGATTGGAGAACTTTCTTCCGATGATGGGCATAAAGGAAGTATTTATGCTGTCAGCTGGAGTCCGGATGGGAAACAGGTGTTGACTGTCTCTGCCGACAAGACAGCAAAAGTCTGGGGGATATCTGATGAGGGTAATGGGACGTTAGAGAAAACCTTGACTTCTCATTGCTCGGGTGGGGTTGATGATATGCTAGTTGGGTGTTTATGGCAGAATCAACATCTTGTCACAGTTTCTCTTGGTGGAACTATTAGTTTGTTTTCAGCCAGTGATCTAGATAAATCCCCTGTCATCTTATTTGGACATATGAAAAATGTTACTTCATTAGTTGTTCTTAAAAGTGACCCTAAAGTGATATTATCAACTAGCTACGATGGCCGGATCATTAAATGGATTCAAGGTATTGGATACAGTGGCAAGTTGCAAAGAAAAGAAAATTCTCAAATCAAATGTCTTGCAGCTCTTGAAGATGAACTTGTTACGTCCGGTTTTGACAATAAGGTATGGAGAGTTTCCATCAAGGATGGTCAGTGTGGGGAGGCAGAGGCTATTGATGTTGGGAGTCAACCAAAGGATTTGACTCTTGCTGCTGTTTCTCCTGAACTTGCTTTGGTTTCAATTGATACTGGAGTTGTCTTACTGCGTGGCTCAAATATAGTGTCAACCATCAACCTTGGGTTTACCGTGACAGCATCAGTACTTGCGCCTGATGGAAGTGAGGTTATTGTAGGTGGGCAAGATGGTAAATTACACATTTATTCCGTCGCAGACGACTCCCTCACTGAAGAAGCAACAATTGAGAAACACAGAGGAGCTATTAGTGTGATACGCTACTCCCCGGATCTTACAATGTTTGCATCAGGAGATCTCAACCGAGAAGCTATTGTTTGGGATCGTGCAACCCGAGAGGTGAAACTTAAGAACATGTTGTTTCACACTGCTCGTATAAATTGCCTCGACTGGTCTCCTGATAACACAAAGGTTGCGACTGGTTCATTAGATACATGTGTCATCATTTATGAAGTTGACAAGCCAGCATCCAGCCGTCTAACAGTAAAGGGAGCTCATTTGGGTGGGGTGTACGGACTGGCATTCACGGATGATTACAGCGTGGTGAGCTCTGGTGAGGACGCTTGTGTTCGTGTTTGGAAATTAGATCCTCAGTGA 3099 46.89 MSSIPRIFLLFSLGFSLFPSFFSLPHPDPLTIRPFQVNQSPPATIPAFPEQSDVQGCPLDLPDELFHGVKTACGPSKGGVSGELHRSRCCPVLAAWLYAAYSATALQRAGRPGAAAGHTAPSYDLPLLPDDSETCVSNLDQALNQRGIELMKPNETCDVVYCYCGIRLHPLSCPEAFSVNQNGILEGDRNVKRLERNCLSSGNVNGFPGLGGCSKCLKSLYQLNNKETLNSSKPENRTTKMHHKECQLMGLTWLLAKNRTGYIHTITSVLRAKMMSKDGSDPKSCTLNSDGMPLAVDSAEISGSSVSTPIQASLNLGLVWAGLLYNMIMLGSEMIFVLCVDWKMPNSFLICPPVKKKRGDSLAFPGNSVRALFHYRYRPLRELHGHSSRCNHLQIDLPFRHFHHIFFLFFFFFFFFFISLTMATPELSETYACMPSTERGRGILISGHPKTNSVLYTNGRSVMMLNLDNPLEVSVYAEHGYPATVARYSPNGEWIASADVSGVMRLWGTHSGFVLKNEYKVLSGRIDDLQWSPDGMRIVACGEGKGKSFVRAFMWDSGSNVGEFDGHSRRVLSCAFKPTRPFRIATCGEDFLVNFYEGPPFRFKQSLRDHSNFVNCIRFSPDGSKFISVSSDKKGILYDAKTADKIGELSSDDGHKGSIYAVSWSPDGKQVLTVSADKTAKVWGISDEGNGTLEKTLTSHCSGGVDDMLVGCLWQNQHLVTVSLGGTISLFSASDLDKSPVILFGHMKNVTSLVVLKSDPKVILSTSYDGRIIKWIQGIGYSGKLQRKENSQIKCLAALEDELVTSGFDNKVWRVSIKDGQCGEAEAIDVGSQPKDLTLAAVSPELALVSIDTGVVLLRGSNIVSTINLGFTVTASVLAPDGSEVIVGGQDGKLHIYSVADDSLTEEATIEKHRGAISVIRYSPDLTMFASGDLNREAIVWDRATREVKLKNMLFHTARINCLDWSPDNTKVATGSLDTCVIIYEVDKPASSRLTVKGAHLGGVYGLAFTDDYSVVSSGEDACVRVWKLDPQ 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1497323 1506187 - CmaCh11G003030.1 Cma11g00303 302812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00303 1032 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 997 1032 - -
Cma11g00303 1032 Pfam WD domain, G-beta repeat 998 1028 IPR001680 GO:0005515
Cma11g00303 1032 Pfam WD domain, G-beta repeat 653 683 IPR001680 GO:0005515
Cma11g00303 1032 Pfam WD domain, G-beta repeat 605 633 IPR001680 GO:0005515
Cma11g00303 1032 Pfam WD domain, G-beta repeat 956 984 IPR001680 GO:0005515
Cma11g00303 1032 PANTHER ACTIN-INTERACTING PROTEIN 1-1 426 1032 - -
Cma11g00303 1032 ProSiteProfiles Trp-Asp (WD) repeats profile. 652 686 IPR001680 GO:0005515
Cma11g00303 1032 ProSiteProfiles Trp-Asp (WD) repeats profile. 910 942 IPR001680 GO:0005515
Cma11g00303 1032 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 459 990 IPR011047 -
Cma11g00303 1032 ProSiteProfiles Trp-Asp (WD) repeats profile. 607 648 IPR001680 GO:0005515
Cma11g00303 1032 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 652 686 - -
Cma11g00303 1032 CDD WD40 472 775 - -
Cma11g00303 1032 SMART WD40_4 642 684 IPR001680 GO:0005515
Cma11g00303 1032 SMART WD40_4 600 639 IPR001680 GO:0005515
Cma11g00303 1032 SMART WD40_4 860 898 IPR001680 GO:0005515
Cma11g00303 1032 SMART WD40_4 690 732 IPR001680 GO:0005515
Cma11g00303 1032 SMART WD40_4 736 776 IPR001680 GO:0005515
Cma11g00303 1032 SMART WD40_4 557 597 IPR001680 GO:0005515
Cma11g00303 1032 SMART WD40_4 512 556 IPR001680 GO:0005515
Cma11g00303 1032 SMART WD40_4 947 985 IPR001680 GO:0005515
Cma11g00303 1032 SMART WD40_4 903 942 IPR001680 GO:0005515
Cma11g00303 1032 SMART WD40_4 989 1028 IPR001680 GO:0005515
Cma11g00303 1032 SMART WD40_4 469 508 IPR001680 GO:0005515
Cma11g00303 1032 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 426 1032 - -
Cma11g00303 1032 Gene3D - 430 1028 IPR015943 GO:0005515
Cma11g00303 1032 ProSiteProfiles Trp-Asp (WD) repeats profile. 997 1032 IPR001680 GO:0005515
Cma11g00303 1032 SUPERFAMILY Putative isomerase YbhE 701 902 - -
Cma11g00303 1032 ProSiteProfiles Trp-Asp (WD) repeats profile. 953 994 IPR001680 GO:0005515
Cma11g00303 1032 Pfam SPARK 55 247 IPR043891 -
Cma11g00303 1032 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 910 942 - -
Cma11g00303 1032 Gene3D - 434 760 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00303 K24736 WDR1, AIP1; WD repeat-containing protein 1 (actin-interacting protein 1) - csv:101218837 1152.89
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00323 Cma11g00303 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00303 Cma-Chr11:1497323 Cma11g01852 Cma-Chr11:12336443 1.35E-65 dispersed
Cma10g00323 Cma-Chr10:1480125 Cma11g00303 Cma-Chr11:1497323 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g232 . Blo16g00117 . . . Bpe13g00373 Bma06g00062 . . . Cma10g00323 Cma11g00303 Car10g00303 Car11g00277 Sed08g0392 . Cpe04g01380 Bhi02g00125 Tan09g1839 Cmetu02g0822 . Hepe09g0377 . . Cla06g01431 Cam06g1585 Cec06g1645 Cco06g1637 Clacu06g1546 Cmu06g1501 Cre06g2310 Cone2ag0753 . . . . . . . . . Bda11g01783 . . . . . . Cmo10g00346 Cmo11g00306 . . . . . . . . . . . . . . . . . . . . Lsi06g01298 Csa01g00422 Chy02g02322 Cme02g01695
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006924 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00303 Cma_Chr11 FPKM 6.213889 6.99728 3.259959 3.235441 36.44751 32.422573 35.683819 1.10745 1.419674 1.622806