Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00304 ATGGGGAGTGGAACTCTCGTAGATGGTGTTCGTCGCTGGTTTCAACGTCGCATTACTTCCTCTTCCTCCTCCTCCTCCTCTTCTTCTTCTAATTTAGGACGTAATTCTGATTCTGATTCTAATCTCAATTACCCATATAATAATAAGCTCGATTATGTGGATAATGGCGAAAATGGTAACCAATTGTTGAGTAGCGATTTACGCGCCCAATCGACCACTCTTCCCCCCAAACGCAAACGTTTACGGAAGCAACCCCATCCCGGAGGAGAAGGCATTCTTAAGCGATTAACTGAGGAGGAGGACGATGGTGTCGACGACCTTGATTACTCTGCCTTGAAGCTCATCAAAGTTCCTAAGCGGACCAATCATTTCAGAGCTCCTCCTCCTCCTCTTCCCGCTTTAATGGATTCCCACAAGAAGGGTGGATTGGAAACAGAATTTTTCACAGAGTATGGAGAAGCCAGCAGATATCAGGTTCAAGAAATAATTGGTAAAGGAAGCTACGGGGTTGTCGGTTCTGCCATTGATACACATACTGATGAGAAGGTCGCAATCAAGAAAATTAATGATGTTTTTGAGCATGTTTCTGATGCCACAAGAATATTAAGAGAAATTAAACTCCTACGGCTGCTTCGACATCCAGATATAGTAGAAATAAAGCACATTATGCTTCCTCCTTCACGGAGAGAATTCAGAGATATTTATGTTGTTTTTGAATTGATGGAATCTGACCTCCACCAAGTAATCAAGGCCAACGATGATCTCACTCCTGAGCACCATCAATTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATATACATACAGCAAATGTATTTCATCGTGATTTAAAGCCCAAAAACATTTTAGCTAATGCCGACTGCAAACTGAAAATATGTGATTTTGGACTTGCTCGTGTGTCGTTTAACGATGCTCCATCTGCTATTTTCTGGACTGACTATGTTGCGACCCGGTGGTATCGTGCTCCTGAACTTTGTGGCTCTTTTTTCTCAAAATACACTCCTGCAATCGATATTTGGAGCATTGGATGCATATTTGCGGAAATGCTCACTGGAAAGCCACTGTTTCCTGGGAAAAATGTGGTGCACCAATTGGATCTGATGACTGATGTGCTTGGCACGCCTTCGGCTGAGTCCATTGCTAGGATTCGAAATGAAAAGGCAAGAAGATACCTTAGTAACATGAGGAGAAAGCAGCCTGTTCCTCTCACACAAAAGTTCCCCAATGCCGATCCCTTGGCTCTCTGCTTGCTTCAACGCCTGCTTGCATTTGATCCCAAAGACCGTCCTACAGCTGAAGAGGCATTAGCGGATCCTTACTTTCATGGTTTGGCGAACGTGGATCGCGAACCATCAACTCAACCGATTTCAAAACTTGAATTTGAATTTGAGAGAAGAAAGTTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGATCTTGGAGTATCATCCTCAGATGCTGCAAGAATATCTCCGCAGTGGAGAACAAACTAGTTTCATGTACCCAAGTGGTGTCGATCGTTTCAAACGCCAGTTTGCGCATCTGGAGGAACATTATGGTAAGGGTGAAAGAAGTTCTCCACTTCAAAGACAGCATGCTTCATTGCCTAGGGAAAGGGTTTGTGCACCCAAAGATGAGGCTGCACAGCACGAGGATTTAGAAGGAAGAAATGGTGTATATGTTGCTTCAACTCTTCAGAGTCCCCCAAGGTCGCAGCAAGGTGATGGTTCGGAAAATGCAAACAGTAACGAACAAAATGGACAAAGCAAGCCAAATTACAGTGCTCGTAGCTTGTTGAAGAGTGCCAGCATCAGTGCCTCTAAATGTATAGGTGTCAAACCAAAAAAGGAACTAGAGGAGGAACCGATTACGGAGGTTAACGACGAGGCAATTGACGGGTTGTCTCAGAAGGTTCATGCAATGGCTGGAAGTGATCAAGATATGGGTGTTCACGAACCTGAAAAATGTGGCAATAATGCCAATCACCAACAAAGACCTTGCTTTGATCCTTCTTCTCTTCTTTCTCCCAAGGCTGTGCCGCCCATCTCGGTGGCAGCGGAGAGCGATCAAGCTCTCCGTCGACCTCGCGGGCGCCCCGCTGGGTCCAAGAACAAGCCGAAACCCCCCATTATTGTTACCCGAGATAGCGCTAATGCTCTCCGGGCTCATGCCATTGAG 2205 44.85 MGSGTLVDGVRRWFQRRITSSSSSSSSSSSNLGRNSDSDSNLNYPYNNKLDYVDNGENGNQLLSSDLRAQSTTLPPKRKRLRKQPHPGGEGILKRLTEEEDDGVDDLDYSALKLIKVPKRTNHFRAPPPPLPALMDSHKKGGLETEFFTEYGEASRYQVQEIIGKGSYGVVGSAIDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDVLGTPSAESIARIRNEKARRYLSNMRRKQPVPLTQKFPNADPLALCLLQRLLAFDPKDRPTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGERSSPLQRQHASLPRERVCAPKDEAAQHEDLEGRNGVYVASTLQSPPRSQQGDGSENANSNEQNGQSKPNYSARSLLKSASISASKCIGVKPKKELEEEPITEVNDEAIDGLSQKVHAMAGSDQDMGVHEPEKCGNNANHQQRPCFDPSSLLSPKAVPPISVAAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIE 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1510304 1520726 - CmaCh11G003040.1 Cma11g00304 302813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00304 735 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 123 581 - -
Cma11g00304 735 ProSiteProfiles Protein kinase domain profile. 157 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00304 735 CDD STKc_TDY_MAPK 156 493 - -
Cma11g00304 735 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 123 581 - -
Cma11g00304 735 SMART serkin_6 157 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00304 735 MobiDBLite consensus disorder prediction 528 553 - -
Cma11g00304 735 SUPERFAMILY Protein kinase-like (PK-like) 153 453 IPR011009 -
Cma11g00304 735 MobiDBLite consensus disorder prediction 18 72 - -
Cma11g00304 735 Pfam Protein kinase domain 157 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00304 735 ProSitePatterns MAP kinase signature. 192 295 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma11g00304 735 MobiDBLite consensus disorder prediction 656 735 - -
Cma11g00304 735 ProSitePatterns Protein kinases ATP-binding region signature. 163 187 IPR017441 GO:0005524
Cma11g00304 735 Gene3D Phosphorylase Kinase; domain 1 173 494 - -
Cma11g00304 735 MobiDBLite consensus disorder prediction 574 601 - -
Cma11g00304 735 Gene3D Transferase(Phosphotransferase) domain 1 243 471 - -
Cma11g00304 735 MobiDBLite consensus disorder prediction 18 93 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00304 Cma13g00998 CCT
Cma11g00304 Cma13g00998 ECH
Cma10g00324 Cma11g00304 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00042 Cma-Chr4:221872 Cma11g00304 Cma-Chr11:1510304 0 dispersed
Cma04g00992 Cma-Chr4:5119035 Cma11g00304 Cma-Chr11:1510304 0 dispersed
Cma08g01177 Cma-Chr8:7244497 Cma11g00304 Cma-Chr11:1510304 0 dispersed
Cma11g00304 Cma-Chr11:1510304 Cma17g00278 Cma-Chr17:1464912 0 dispersed
Cma10g00324 Cma-Chr10:1489796 Cma11g00304 Cma-Chr11:1510304 0 wgd
Cma11g00304 Cma-Chr11:1510304 Cma13g00998 Cma-Chr13:7716467 0 wgd
Cma11g00304 Cma-Chr11:1510304 Cma18g00063 Cma-Chr18:268209 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68876 PF00069 Pkinase 8.40E-68 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00304 - - cpep:111793155 1246.49