Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00306 ATGGCGGATTCATTCGACGAAGAGTGCGATTATCTGTTCAAGGCGGTTCTGACGGGCGATTCCGGCGTCGGAAAATCCAATCTCCTCTCCCGTTTCGCCAGAGCCGAGTTCCGATTGGATTCCAAACCGACCATCGGCGTCGAATTCGCTTACCGGAATATCAAGGTCGCCGATAAGCTCATCAAAACCCAAATCTGGGACACCGCCGGCCAAGAAAGATTTAGGGCCATTACAAGCTCCTATTATCGAGGAGCATTGGGAGCATTACTAGTATATGACATAACTCGAGCTGCCACATTTGAGAATGTGAAGAAGTGGCTACGAGAGCTAAGAGATTTTGGGAATTCAGACATGGTCATCGTTCTAGTTGGAAACAAAAGTGATTTGAACCATTCTCGAGAAGTTGAGGAGGAAGAAGGACGACGTTTGGCAGAGTCTGAAGACTTATTTTTCATGGAAACTTCTGCCATGGATAATGTGAACGTGGAAGAAGCATTTCTTGAAATGATCGATCAGCAAGCGGCAGAGTCGCTTAAGAAGGACGAAAGGCCTCCATCTGTGGGTAATTTGGAAGCCACTGGCAAAACTGGAGATATTTTGCCTTTGAAGGATCAGCTCAAGAAGAAGAACCAAGATGATAAAGATTATCATGGCAAATTTCGTAGTGATCTAAGTTTGAATGTAAGCAGAAACCAGGATAATGTGATTTCTGCCTCACCAAAATCCTCGCCATCGTCAAAACCATCCACACTTACGGACAGTGACTGGACTGAACTGCTCGGTACACCAAATCAACCTTCAACTTCGGCTGCAGCCCGCAGTAATGGTGCATCCTCAATTCGTGGTGCAAAGAGAGACGGTCGCAAACCAAGTAATGCAGGTTCAACTGTGTCGGCGATGGATTTCAAGAGAACTCAGAACAACACTATAAGTAACAAGTCCGTTGGGGAAACCAAAAGATTAAATAGGAAGGCAAGTGATGTGGAAGAATCTAATGTTTCAGTTCCATTGAGGACTGATACAAGAGTTGATCTGAAGAGTGACCAAAATATTATGCATTCTGAAGGTCGAGAACTAGATAAAAAAGAGGCTGGTGACAATATTTTAGTTGAAGCAAAAAGTGTGGAGAAAAAAGAATGTGGTGGGAATTTTGATTCTAAGGGTTTTTCTTTGAAGGATTCTGTGCTAGCAATACGAAATGGTCATTCCTCAGAAACAATGCCGGATACAGGTCAGGCTGACAGGATATCTGATACAAAAATCATTGTGAAAGCTGTGCAAAATCATCAAGGAAGTGGTGTTTCTGGAAAGCATAAATCAGATGAAGTTTCTCGTAGTTCTATATCTGATGATGTAAGAAAAGAATGGACAGGATCTTCAACTAGTGATGGGAGTTCTGGTTCAGATTCAGACTCAGGTTCAGCTTCTGATTCTGAAATTGAACGTGAGAGGGAAGAAAAAAGGAGGAGGAGGCAGAAAATTCTGGCTGAGAAAGCAGCTGCCAAAGCCTTGGAGGCTATCAAAGAACAGGAAGACTTGGTTGCTAGACTGGAGGGTGAGAAGCAGAGCCTGGAAAAAATACTGGAGGATCGAGCAAGAAAGCAAGCAGAAGAGGCTTCAGAGCTGCAGACATCTATGATGGAAACAATGGAGGCTGTTGAGCTTGAGAAGCAGAAGCACAATGAAACCCGTAGAGAAGCCCTTGCAATAATGGCCAAGCTTGAGACTGAAAATGCTGATCTTGCGAGAACCCTTGCTTCTGTACAATGGAATCTTGAGTTAGAGGGTAATCGGGTTGCAGGACTTCGACAGCAGATTGAACTGAAAGAAACAACTCACGAAGAACTGAGGAGGAGGATTGCAAGCTCTCATCAAGCTGGAACATCGACAAAATCATTGCCTTTTAAAGGCATTGAATTTGAATTGGAGATTCTTGAGGCAGAGCTCTCTCTCATCACTGATAAAGTCCTCCAACTGCAGGAGAAGGGGGAGAAGTTGGAAGAAAACATAGAGTTGATGAGAAGAGAGATGGAGGAACCAACTGAAGTTGAAATTGAACTCAAGAAAAGGCTTGGCCAGATGACTGACCATTTAATTCAGAAGCAAGCTCAGGTGGAGGCACTGTCTTCAGAGAAAGCAACCCTTCTCTTCAGAACTGAGGCTGTGATGAGGCAGCTAGAAGAAAACAAATTCATGGTGAATACAAACAACATTTCGAGCACCTTATCGAGGGACTTGGAGTCCGGAAAATGGGAACTTTCAGGTTCAAAACTGAGACCAATGTTAGAGGACAAGATCCACTCGGGCAAGAAACACCTAGGATCCTTGATTCGGCAGCTGGATGCAATATATGTAGCAGGCATGGTGTTTATAAGGAGAAATCCGGCAGCTAAATTATGA 2400 43.96 MADSFDEECDYLFKAVLTGDSGVGKSNLLSRFARAEFRLDSKPTIGVEFAYRNIKVADKLIKTQIWDTAGQERFRAITSSYYRGALGALLVYDITRAATFENVKKWLRELRDFGNSDMVIVLVGNKSDLNHSREVEEEEGRRLAESEDLFFMETSAMDNVNVEEAFLEMIDQQAAESLKKDERPPSVGNLEATGKTGDILPLKDQLKKKNQDDKDYHGKFRSDLSLNVSRNQDNVISASPKSSPSSKPSTLTDSDWTELLGTPNQPSTSAAARSNGASSIRGAKRDGRKPSNAGSTVSAMDFKRTQNNTISNKSVGETKRLNRKASDVEESNVSVPLRTDTRVDLKSDQNIMHSEGRELDKKEAGDNILVEAKSVEKKECGGNFDSKGFSLKDSVLAIRNGHSSETMPDTGQADRISDTKIIVKAVQNHQGSGVSGKHKSDEVSRSSISDDVRKEWTGSSTSDGSSGSDSDSGSASDSEIEREREEKRRRRQKILAEKAAAKALEAIKEQEDLVARLEGEKQSLEKILEDRARKQAEEASELQTSMMETMEAVELEKQKHNETRREALAIMAKLETENADLARTLASVQWNLELEGNRVAGLRQQIELKETTHEELRRRIASSHQAGTSTKSLPFKGIEFELEILEAELSLITDKVLQLQEKGEKLEENIELMRREMEEPTEVEIELKKRLGQMTDHLIQKQAQVEALSSEKATLLFRTEAVMRQLEENKFMVNTNNISSTLSRDLESGKWELSGSKLRPMLEDKIHSGKKHLGSLIRQLDAIYVAGMVFIRRNPAAKL 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1520886 1531524 - CmaCh11G003060.1 Cma11g00306 302815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00306 799 PANTHER GOLGIN SUBFAMILY A MEMBER 5 164 799 - -
Cma11g00306 799 SMART ras_sub_4 10 176 - -
Cma11g00306 799 Gene3D - 5 194 IPR027417 -
Cma11g00306 799 MobiDBLite consensus disorder prediction 224 276 - -
Cma11g00306 799 Coils Coil 642 676 - -
Cma11g00306 799 Pfam Ras family 14 172 IPR001806 GO:0003924|GO:0005525
Cma11g00306 799 MobiDBLite consensus disorder prediction 435 452 - -
Cma11g00306 799 MobiDBLite consensus disorder prediction 201 221 - -
Cma11g00306 799 SMART rho_sub_3 15 176 IPR001806 GO:0003924|GO:0005525
Cma11g00306 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 174 IPR027417 -
Cma11g00306 799 Coils Coil 599 619 - -
Cma11g00306 799 Coils Coil 557 591 - -
Cma11g00306 799 ProSiteProfiles small GTPase Rab1 family profile. 8 237 - -
Cma11g00306 799 PRINTS Transforming protein P21 ras signature 151 173 - -
Cma11g00306 799 PRINTS Transforming protein P21 ras signature 36 52 - -
Cma11g00306 799 PRINTS Transforming protein P21 ras signature 54 76 - -
Cma11g00306 799 PRINTS Transforming protein P21 ras signature 116 129 - -
Cma11g00306 799 PRINTS Transforming protein P21 ras signature 13 34 - -
Cma11g00306 799 MobiDBLite consensus disorder prediction 176 335 - -
Cma11g00306 799 Coils Coil 500 537 - -
Cma11g00306 799 SMART ran_sub_2 18 216 - -
Cma11g00306 799 MobiDBLite consensus disorder prediction 453 474 - -
Cma11g00306 799 MobiDBLite consensus disorder prediction 427 491 - -
Cma11g00306 799 CDD Rab11_like 10 172 - -
Cma11g00306 799 Pfam Golgin subfamily A member 5 618 799 IPR019177 GO:0007030
Cma11g00306 799 ProSiteProfiles small GTPase Ras family profile. 4 237 IPR001806 GO:0003924|GO:0005525
Cma11g00306 799 ProSiteProfiles small GTPase Rho family profile. 6 178 - -
Cma11g00306 799 SMART rab_sub_5 13 176 - -
Cma11g00306 799 TIGRFAM small_GTP: small GTP-binding protein domain 12 166 IPR005225 GO:0005525
Cma11g00306 799 MobiDBLite consensus disorder prediction 291 316 - -
Cma11g00306 799 PANTHER GOLGIN-84 164 799 IPR019177 GO:0007030
Cma11g00306 799 MobiDBLite consensus disorder prediction 475 491 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00306 - - - cpep:111793342 1054.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00325 Cma11g00306 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00306 Cma-Chr11:1520886 Cma01g01232 Cma-Chr1:8880307 3.43E-75 dispersed
Cma10g00325 Cma-Chr10:1496311 Cma11g00306 Cma-Chr11:1520886 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g218 . . . . . . . . . . Cma10g00325 Cma11g00306 Car10g00307 . Sed08g0399 . Cpe04g01375 Bhi02g00130 Tan09g1831 Cmetu05g0278 . . . . Cla06g01426 Cam06g1580 Cec06g1640 Cco06g1632 Clacu06g1541 Cmu06g1496 Cre06g2305 . . . . . . . . . . . . . . . . . Cmo10g00350 Cmo11g00312 . . . . . . . . . . . . . . . . . . . . Lsi06g01293 Csa01g00427 Chy02g02317 Cme02g01690
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005982 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00306 Cma_Chr11 FPKM 13.653394 12.964067 19.609167 18.849571 9.591998 8.227492 9.698851 20.911957 20.737026 20.909101