Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00311 | ATGTGGACTTTGGGACATGACGATAATGGTGCAGAATTTTGCTTCTCTCAGCCCTTTCATGGCGGCCGCAAGCTTCGCCCTCTTGTCCCTCGCCCCTTGCCTTCTCTTCGCCTCAATGCTGCCAACCTCCCTTCACAATATTACCATCTAGCTAATCTTTTGAATGATCAAAGCAAGAGAGAGTTGTTGAATAATGATGTTAGTGGGTTATCTTCTCCACCGGTAATGGTAAGCTCATCAAGGTGGAATCCAACGCCGGAGCAGTTGAGAATTTTGGAGGAGCTTTACCGGCGGGGGACACGAACGCCGTCCGCCGACCAAATCCAACATATCACCGCCCAGCTCCGCCGCTTCGGCAAAATTGAAGGCAAAAACGTCTTCTATTGGTTTCAAAATCATAAGGCTAGAGAGCGGCAAAAACGACGCCGTCAAACAGCCGCTGAAGAACACAAATATTCAGAGACAGTAAAAGGGTACGAAATTCAACAGACAAAGACGAACCGGCCTCGGCCAACTCCACCACCCTCTAACCTCTGCAGTAATGCCACACTTTCACAGGAATGTGCAAAAGTCCAAAGAACAACAAAAGTAGTAGAATTGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGAAGAAGAGATGGAACATGGAATAATGATACAGTGAATTGTCAACTCATAAACCTTACAAGGAACACCCGACATCTAGACAGTGTCATCGAACCCCGCAACGATCCAAGACGATACAATATCGTTAACGATGACGAGAATGAGGACGAGGAATCTGAGACGACGACACTCCAGTTGTTTCCTCTGAGCAGCATGAAGTACTGCAAATACGAGAGCAAGAACGAGAGGGAGAAACGACAAGACGATCGGCTGGATTCGAACATGACGAAGAGCTCGATGTCCACATTTTCTCCCACTTGTATCAAGTTCTTTGAGTTTCTTCCTCTCAAAAACTGA | 969 | 46.34 | MWTLGHDDNGAEFCFSQPFHGGRKLRPLVPRPLPSLRLNAANLPSQYYHLANLLNDQSKRELLNNDVSGLSSPPVMVSSSRWNPTPEQLRILEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQTAAEEHKYSETVKGYEIQQTKTNRPRPTPPPSNLCSNATLSQECAKVQRTTKVVELEEEEEEEEEEERRRDGTWNNDTVNCQLINLTRNTRHLDSVIEPRNDPRRYNIVNDDENEDEESETTTLQLFPLSSMKYCKYESKNEREKRQDDRLDSNMTKSSMSTFSPTCIKFFEFLPLKN | 322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1543460 | 1546803 | + | CmaCh11G003110.1 | Cma11g00311 | 302820 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00311 | 322 | SMART | HOX_1 | 77 | 144 | IPR001356 | GO:0003677 | |
Cma11g00311 | 322 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 48 | 322 | - | - | |
Cma11g00311 | 322 | MobiDBLite | consensus disorder prediction | 141 | 156 | - | - | |
Cma11g00311 | 322 | Gene3D | - | 77 | 140 | - | - | |
Cma11g00311 | 322 | MobiDBLite | consensus disorder prediction | 282 | 302 | - | - | |
Cma11g00311 | 322 | Pfam | Homeodomain | 79 | 139 | IPR001356 | GO:0003677 | |
Cma11g00311 | 322 | MobiDBLite | consensus disorder prediction | 197 | 219 | - | - | |
Cma11g00311 | 322 | CDD | homeodomain | 81 | 141 | IPR001356 | GO:0003677 | |
Cma11g00311 | 322 | ProSiteProfiles | 'Homeobox' domain profile. | 85 | 140 | IPR001356 | GO:0003677 | |
Cma11g00311 | 322 | SUPERFAMILY | Homeodomain-like | 79 | 144 | IPR009057 | - | |
Cma11g00311 | 322 | Coils | Coil | 190 | 213 | - | - | |
Cma11g00311 | 322 | MobiDBLite | consensus disorder prediction | 138 | 184 | - | - | |
Cma11g00311 | 322 | MobiDBLite | consensus disorder prediction | 282 | 297 | - | - | |
Cma11g00311 | 322 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 48 | 322 | IPR044555 | GO:0003700|GO:0099402 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g00311 | Cma18g00071 | CCT | |
Cma11g00311 | Cma13g00993 | CCT | |
Cma11g00311 | Cma18g00071 | ECH | |
Cma11g00311 | Cma13g00993 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02915 | Cma-Chr4:19280739 | Cma11g00311 | Cma-Chr11:1543460 | 2.54E-27 | dispersed | |
Cma07g00431 | Cma-Chr7:1880489 | Cma11g00311 | Cma-Chr11:1543460 | 6.51E-28 | dispersed | |
Cma11g00311 | Cma-Chr11:1543460 | Cma12g00562 | Cma-Chr12:2933794 | 1.44E-29 | dispersed | |
Cma16g01272 | Cma-Chr16:9689343 | Cma11g00311 | Cma-Chr11:1543460 | 1.74E-13 | dispersed | |
Cma11g00311 | Cma-Chr11:1543460 | Cma13g00993 | Cma-Chr13:7684742 | 4.20E-48 | wgd | |
Cma11g00311 | Cma-Chr11:1543460 | Cma18g00071 | Cma-Chr18:303833 | 2.08E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35801 | PF00046 | Homeodomain | 1.10E-19 | CL0123 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00311 | - | - | csv:105434593 | 330.487 |