Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00311 ATGTGGACTTTGGGACATGACGATAATGGTGCAGAATTTTGCTTCTCTCAGCCCTTTCATGGCGGCCGCAAGCTTCGCCCTCTTGTCCCTCGCCCCTTGCCTTCTCTTCGCCTCAATGCTGCCAACCTCCCTTCACAATATTACCATCTAGCTAATCTTTTGAATGATCAAAGCAAGAGAGAGTTGTTGAATAATGATGTTAGTGGGTTATCTTCTCCACCGGTAATGGTAAGCTCATCAAGGTGGAATCCAACGCCGGAGCAGTTGAGAATTTTGGAGGAGCTTTACCGGCGGGGGACACGAACGCCGTCCGCCGACCAAATCCAACATATCACCGCCCAGCTCCGCCGCTTCGGCAAAATTGAAGGCAAAAACGTCTTCTATTGGTTTCAAAATCATAAGGCTAGAGAGCGGCAAAAACGACGCCGTCAAACAGCCGCTGAAGAACACAAATATTCAGAGACAGTAAAAGGGTACGAAATTCAACAGACAAAGACGAACCGGCCTCGGCCAACTCCACCACCCTCTAACCTCTGCAGTAATGCCACACTTTCACAGGAATGTGCAAAAGTCCAAAGAACAACAAAAGTAGTAGAATTGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGAAGAAGAGATGGAACATGGAATAATGATACAGTGAATTGTCAACTCATAAACCTTACAAGGAACACCCGACATCTAGACAGTGTCATCGAACCCCGCAACGATCCAAGACGATACAATATCGTTAACGATGACGAGAATGAGGACGAGGAATCTGAGACGACGACACTCCAGTTGTTTCCTCTGAGCAGCATGAAGTACTGCAAATACGAGAGCAAGAACGAGAGGGAGAAACGACAAGACGATCGGCTGGATTCGAACATGACGAAGAGCTCGATGTCCACATTTTCTCCCACTTGTATCAAGTTCTTTGAGTTTCTTCCTCTCAAAAACTGA 969 46.34 MWTLGHDDNGAEFCFSQPFHGGRKLRPLVPRPLPSLRLNAANLPSQYYHLANLLNDQSKRELLNNDVSGLSSPPVMVSSSRWNPTPEQLRILEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQTAAEEHKYSETVKGYEIQQTKTNRPRPTPPPSNLCSNATLSQECAKVQRTTKVVELEEEEEEEEEEERRRDGTWNNDTVNCQLINLTRNTRHLDSVIEPRNDPRRYNIVNDDENEDEESETTTLQLFPLSSMKYCKYESKNEREKRQDDRLDSNMTKSSMSTFSPTCIKFFEFLPLKN 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1543460 1546803 + CmaCh11G003110.1 Cma11g00311 302820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00311 322 SMART HOX_1 77 144 IPR001356 GO:0003677
Cma11g00311 322 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 48 322 - -
Cma11g00311 322 MobiDBLite consensus disorder prediction 141 156 - -
Cma11g00311 322 Gene3D - 77 140 - -
Cma11g00311 322 MobiDBLite consensus disorder prediction 282 302 - -
Cma11g00311 322 Pfam Homeodomain 79 139 IPR001356 GO:0003677
Cma11g00311 322 MobiDBLite consensus disorder prediction 197 219 - -
Cma11g00311 322 CDD homeodomain 81 141 IPR001356 GO:0003677
Cma11g00311 322 ProSiteProfiles 'Homeobox' domain profile. 85 140 IPR001356 GO:0003677
Cma11g00311 322 SUPERFAMILY Homeodomain-like 79 144 IPR009057 -
Cma11g00311 322 Coils Coil 190 213 - -
Cma11g00311 322 MobiDBLite consensus disorder prediction 138 184 - -
Cma11g00311 322 MobiDBLite consensus disorder prediction 282 297 - -
Cma11g00311 322 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 48 322 IPR044555 GO:0003700|GO:0099402
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00311 Cma18g00071 CCT
Cma11g00311 Cma13g00993 CCT
Cma11g00311 Cma18g00071 ECH
Cma11g00311 Cma13g00993 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02915 Cma-Chr4:19280739 Cma11g00311 Cma-Chr11:1543460 2.54E-27 dispersed
Cma07g00431 Cma-Chr7:1880489 Cma11g00311 Cma-Chr11:1543460 6.51E-28 dispersed
Cma11g00311 Cma-Chr11:1543460 Cma12g00562 Cma-Chr12:2933794 1.44E-29 dispersed
Cma16g01272 Cma-Chr16:9689343 Cma11g00311 Cma-Chr11:1543460 1.74E-13 dispersed
Cma11g00311 Cma-Chr11:1543460 Cma13g00993 Cma-Chr13:7684742 4.20E-48 wgd
Cma11g00311 Cma-Chr11:1543460 Cma18g00071 Cma-Chr18:303833 2.08E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35801 PF00046 Homeodomain 1.10E-19 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00311 - - csv:105434593 330.487