Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00311 ATGTGGACTTTGGGACATGACGATAATGGTGCAGAATTTTGCTTCTCTCAGCCCTTTCATGGCGGCCGCAAGCTTCGCCCTCTTGTCCCTCGCCCCTTGCCTTCTCTTCGCCTCAATGCTGCCAACCTCCCTTCACAATATTACCATCTAGCTAATCTTTTGAATGATCAAAGCAAGAGAGAGTTGTTGAATAATGATGTTAGTGGGTTATCTTCTCCACCGGTAATGGTAAGCTCATCAAGGTGGAATCCAACGCCGGAGCAGTTGAGAATTTTGGAGGAGCTTTACCGGCGGGGGACACGAACGCCGTCCGCCGACCAAATCCAACATATCACCGCCCAGCTCCGCCGCTTCGGCAAAATTGAAGGCAAAAACGTCTTCTATTGGTTTCAAAATCATAAGGCTAGAGAGCGGCAAAAACGACGCCGTCAAACAGCCGCTGAAGAACACAAATATTCAGAGACAGTAAAAGGGTACGAAATTCAACAGACAAAGACGAACCGGCCTCGGCCAACTCCACCACCCTCTAACCTCTGCAGTAATGCCACACTTTCACAGGAATGTGCAAAAGTCCAAAGAACAACAAAAGTAGTAGAATTGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGAAGAAGAGATGGAACATGGAATAATGATACAGTGAATTGTCAACTCATAAACCTTACAAGGAACACCCGACATCTAGACAGTGTCATCGAACCCCGCAACGATCCAAGACGATACAATATCGTTAACGATGACGAGAATGAGGACGAGGAATCTGAGACGACGACACTCCAGTTGTTTCCTCTGAGCAGCATGAAGTACTGCAAATACGAGAGCAAGAACGAGAGGGAGAAACGACAAGACGATCGGCTGGATTCGAACATGACGAAGAGCTCGATGTCCACATTTTCTCCCACTTGTATCAAGTTCTTTGAGTTTCTTCCTCTCAAAAACTGA 969 46.34 MWTLGHDDNGAEFCFSQPFHGGRKLRPLVPRPLPSLRLNAANLPSQYYHLANLLNDQSKRELLNNDVSGLSSPPVMVSSSRWNPTPEQLRILEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQTAAEEHKYSETVKGYEIQQTKTNRPRPTPPPSNLCSNATLSQECAKVQRTTKVVELEEEEEEEEEEERRRDGTWNNDTVNCQLINLTRNTRHLDSVIEPRNDPRRYNIVNDDENEDEESETTTLQLFPLSSMKYCKYESKNEREKRQDDRLDSNMTKSSMSTFSPTCIKFFEFLPLKN 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1543460 1546803 + CmaCh11G003110.1 Cma11g00311 302820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00311 322 SMART HOX_1 77 144 IPR001356 GO:0003677
Cma11g00311 322 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 48 322 - -
Cma11g00311 322 MobiDBLite consensus disorder prediction 141 156 - -
Cma11g00311 322 Gene3D - 77 140 - -
Cma11g00311 322 MobiDBLite consensus disorder prediction 282 302 - -
Cma11g00311 322 Pfam Homeodomain 79 139 IPR001356 GO:0003677
Cma11g00311 322 MobiDBLite consensus disorder prediction 197 219 - -
Cma11g00311 322 CDD homeodomain 81 141 IPR001356 GO:0003677
Cma11g00311 322 ProSiteProfiles 'Homeobox' domain profile. 85 140 IPR001356 GO:0003677
Cma11g00311 322 SUPERFAMILY Homeodomain-like 79 144 IPR009057 -
Cma11g00311 322 Coils Coil 190 213 - -
Cma11g00311 322 MobiDBLite consensus disorder prediction 138 184 - -
Cma11g00311 322 MobiDBLite consensus disorder prediction 282 297 - -
Cma11g00311 322 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 48 322 IPR044555 GO:0003700|GO:0099402
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00311 - - - csv:105434593 330.487
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00311 Cma18g00071 CCT
Cma11g00311 Cma13g00993 CCT
Cma11g00311 Cma18g00071 ECH
Cma11g00311 Cma13g00993 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02915 Cma-Chr4:19280739 Cma11g00311 Cma-Chr11:1543460 2.54E-27 dispersed
Cma07g00431 Cma-Chr7:1880489 Cma11g00311 Cma-Chr11:1543460 6.51E-28 dispersed
Cma11g00311 Cma-Chr11:1543460 Cma12g00562 Cma-Chr12:2933794 1.44E-29 dispersed
Cma16g01272 Cma-Chr16:9689343 Cma11g00311 Cma-Chr11:1543460 1.74E-13 dispersed
Cma11g00311 Cma-Chr11:1543460 Cma13g00993 Cma-Chr13:7684742 4.20E-48 wgd
Cma11g00311 Cma-Chr11:1543460 Cma18g00071 Cma-Chr18:303833 2.08E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g212 . . . Bda15g00511 Bpe12g00698 . . . Cmo13g01029 Cmo18g00054 . Cma11g00311 . Car11g00287 Sed12g2115 Cpe20g00149 Cpe04g01371 Bhi02g00135 Tan09g1827 Cmetu02g0991 . Hepe09g0388 . . Cla06g01422 Cam06g1576 Cec06g1636 Cco06g1628 Clacu06g1538 Cmu06g1492 Cre06g2301 Cone2ag0760 . . . Lsi02g00230 Csa01g00712 Chy12g01399 Cme12g01833 Blo13g00175 . . . . . . Bma08g00054 Sed08g2754 . Cmo11g00316 Cma13g00993 Cma18g00071 Car13g00827 Car18g00062 Cpe09g01115 . Bhi08g01290 Tan05g2195 Cmetu12g1142 Lac10g0287 Hepe07g2356 . . Cla04g01050 Cam04g1093 Cec01g1608 Cco01g1654 Clacu04g1119 Cmu04g1103 Cre01g1402 Lsi06g01287 Csa01g00431 Chy02g02313 Cme02g01686
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00071 CCT,CST,ECH 1 174 Wox Gene Family AT3G18010 58.0 4.1e-48 189.5
Cma13g00993 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 57.0 1.3e-46 184.5
Cma11g00311 CCT,ECH 1 165 Wox Gene Family AT3G18010 56.0 2.2e-41 167.2
Cma06g00070 . 4 234 Wox Gene Family AT3G03660 51.9 7.5e-51 198.4
Cma14g00454 . 14 246 Wox Gene Family AT3G03660 50.6 2.8e-42 169.9
Cma16g01272 . 136 409 Wox Gene Family AT4G35550 52.2 1.2e-71 267.3
Cma06g00150 . 28 265 Wox Gene Family AT4G35550 53.7 1.3e-65 247.3
Cma09g00047 CST 1 191 Wox Gene Family AT4G35550 60.7 5.3e-56 215.3
Cma01g02023 CST 40 181 Wox Gene Family AT4G35550 71.3 8.0e-52 201.4
Cma06g00150 . 28 167 Wox Gene Family AT1G20700 56.6 2.0e-39 159.8
Cma01g02023 CST 57 188 Wox Gene Family AT1G20700 58.5 5.8e-39 158.3
Cma05g00171 CST 10 181 Wox Gene Family AT1G46480 58.9 4.2e-47 185.3
Cma12g00562 CST 5 138 Wox Gene Family AT1G46480 62.8 2.8e-43 172.6
Cma07g00209 CST 1 387 Wox Gene Family AT2G33880 50.1 1.0e-63 241.5
Cma18g00071 CCT,CST,ECH 1 174 Wox Gene Family AT3G18010 58.0 4.1e-48 189.5
Cma13g00993 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 57.0 1.3e-46 184.5
Cma11g00311 CCT,ECH 1 165 Wox Gene Family AT3G18010 56.0 2.2e-41 167.2
Cma05g00171 CST 10 181 Wox Gene Family AT1G46480 58.9 4.2e-47 185.3
Cma12g00562 CST 5 138 Wox Gene Family AT1G46480 62.8 2.8e-43 172.6
Cma07g00209 CST 1 387 Wox Gene Family AT2G33880 50.1 1.0e-63 241.5
Cma06g00070 . 4 234 Wox Gene Family AT3G03660 51.9 7.5e-51 198.4
Cma14g00454 . 14 246 Wox Gene Family AT3G03660 50.6 2.8e-42 169.9
Cma16g01272 . 136 409 Wox Gene Family AT4G35550 52.2 1.2e-71 267.3
Cma06g00150 . 28 265 Wox Gene Family AT4G35550 53.7 1.3e-65 247.3
Cma09g00047 CST 1 191 Wox Gene Family AT4G35550 60.7 5.3e-56 215.3
Cma01g02023 CST 40 181 Wox Gene Family AT4G35550 71.3 8.0e-52 201.4
Cma06g00150 . 28 167 Wox Gene Family AT1G20700 56.6 2.0e-39 159.8
Cma01g02023 CST 57 188 Wox Gene Family AT1G20700 58.5 5.8e-39 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014148 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35801 PF00046 Homeodomain 1.10E-19 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00311 Cma_Chr11 FPKM 0.0 0.0 0.0 0.0 4.254631 3.63555 4.182658 0.0 0.0 0.0