Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00314 ATGCCGGATACTCCATCGTCGCCAAAGAGCGGTGGTCGGTTGGTGTTAATGGAGAATCTGCTCGGACTTCTCCGTATTCGCGTCATTCGTGGTGTCAATCTTGCTGTTCGTGATGTTCGCAGCAGCGATCCTTATGTTGTCATCAAGATGGGAAAGCAAAAATTGAAGACACGGGTGATAAAGAAGGATGTCAATCCTGTATGGAATGAAGATCTAACACTTTCTGTCAGTGACCCGAATATTCCCATTAAGCTGACTGTTTACGACCACGACAAATTTAGCAAGGATGATAAAATGGGATATGCTGAGTTTGATATCAAATCATTTATAGAAGCTCAAAAGATGAACTTGAAAAATCTTCCTAGTGGAACGACAATCTCACGAACGCTTCCGGGCAGGAACAACTGTTTTGCTGAAGAGAGCTGCGTCATCTGGAAAGACGGTAAAGTTATCCAAGATATATACCTTAGATTGAGAAGGGTCGAATGCGGAGAAGTCGAAATTCAGCTGCAGTGGATTGATCTTCCAAACCCCAAAGATTAA 543 43.09 MPDTPSSPKSGGRLVLMENLLGLLRIRVIRGVNLAVRDVRSSDPYVVIKMGKQKLKTRVIKKDVNPVWNEDLTLSVSDPNIPIKLTVYDHDKFSKDDKMGYAEFDIKSFIEAQKMNLKNLPSGTTISRTLPGRNNCFAEESCVIWKDGKVIQDIYLRLRRVECGEVEIQLQWIDLPNPKD 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1562997 1565820 - CmaCh11G003140.1 Cma11g00314 302823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00314 180 CDD C2_ArfGAP 21 164 - -
Cma11g00314 180 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 11 179 IPR044562 -
Cma11g00314 180 Gene3D C2 domain 18 180 IPR035892 -
Cma11g00314 180 Pfam C2 domain 22 113 IPR000008 -
Cma11g00314 180 SMART C2_3c 23 118 IPR000008 -
Cma11g00314 180 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 22 167 IPR035892 -
Cma11g00314 180 ProSiteProfiles C2 domain profile. 5 119 IPR000008 -
Cma11g00314 180 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE 11 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00314 Cma-Chr11:1562997 Cma14g00837 Cma-Chr14:4298388 1.20E-81 dispersed
Cma18g00617 Cma-Chr18:5484269 Cma11g00314 Cma-Chr11:1562997 3.12E-40 dispersed
Cma18g00867 Cma-Chr18:7545002 Cma11g00314 Cma-Chr11:1562997 3.90E-38 dispersed
Cma10g00328 Cma-Chr10:1510138 Cma11g00314 Cma-Chr11:1562997 8.74E-112 wgd
Cma11g00314 Cma-Chr11:1562997 Cma13g00989 Cma-Chr13:7660727 7.41E-88 wgd
Cma11g00314 Cma-Chr11:1562997 Cma18g00074 Cma-Chr18:329922 1.53E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00314 - - csv:101220972 305.834