Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00317 ATGTCCCCTACAAAATTCCTACACTTCGGCACTGCAATCTCCCGAGCAACATCCAGATCTCTATCGCCACTCCTCTTCCCCAGAAGATTCTTCATCAACTGCAGCTCTTCTACTACGCTAGATTCCGCCGGCGACGGCGGCGTTGATGCGCCTCAACCACACTCCAGCCTCATTCACCACCCCTGGCCTGAATGGATTTCCTTTGTCGACGGCCTGAAGGCCAAAGGTTACTTGATCGAACCTCCTTCGGAGGATGCAAACGGAGATGGGAGCGGTGGTGATGCAGTGACGCCATCCGAGACTGATTACAATGACATGAACGTGCTGAAGGATGCTTGCCTTAGCTTTGCGCGCGACCGCCACGATATTTTAGAGTCATTGTCCAGAGATGATATCCAAACGGTTATGAAGGATGGATGTCCCAATCTCTTCCGGAAAGTTGTCAATTCAGCTAAAAGGTTAAGGGCTTATGTGCATCTAGATGAAGGGGAGGTTTGTGGTACTTGCAACCTTCGAGGCTCCTGTGATAGAGCTTATGTTATTATGAAGGAAACAGAAGCTGCAAGAACTGTGGATGTAGCTAGAATATTGTTGGCCTATGCATTGGATCCACTTGTTTTGTCTGGAGGGGACAAAGCTTTGGGTAGAGAGCATGTCGAAGTCTCTATCAGGAAATTGCTTTCTGAGATATCTGAACTGAGTGAAGAACCCATTGAGGCAGCTGCAGCAGTGAAGGCTGATACAAAAACTCCATCTAGAAAAGAAAAGCCATCAAAACTTACAAATGATGCATTGTCTAAAGATGTTGAGATGAAAAGAGGAGATTGGATGTGCTCAAAGTGTAAATTCATGAACTTCTCAAGAAACATTCACTGCTTAAAGTGCAAAAGCAAGAGGCCGAAGAAGATGAATGTTGAAGAAATTGGAATGAAGAAGGGAGATTGGATCTGCCCGCAATGTGAATTCATGAACTTTGCGAGCAAGAAGGAATGTTTGCGATGCCGAGAACATCGTCCAAAGAGGGAGCTGAGTCCAGGAGAATGGGAATGCCCCTCATGTGACTTTTTAAATTACAGACGGAACATGATGTGCCGCAACTGCAATTGTGAGCGACCTAAACAAGAAATAAGTGCCGAGAACCAGGAACGTCTATGGGAGTCACCCACGGAAAGATGA 1176 46.34 MSPTKFLHFGTAISRATSRSLSPLLFPRRFFINCSSSTTLDSAGDGGVDAPQPHSSLIHHPWPEWISFVDGLKAKGYLIEPPSEDANGDGSGGDAVTPSETDYNDMNVLKDACLSFARDRHDILESLSRDDIQTVMKDGCPNLFRKVVNSAKRLRAYVHLDEGEVCGTCNLRGSCDRAYVIMKETEAARTVDVARILLAYALDPLVLSGGDKALGREHVEVSIRKLLSEISELSEEPIEAAAAVKADTKTPSRKEKPSKLTNDALSKDVEMKRGDWMCSKCKFMNFSRNIHCLKCKSKRPKKMNVEEIGMKKGDWICPQCEFMNFASKKECLRCREHRPKRELSPGEWECPSCDFLNYRRNMMCRNCNCERPKQEISAENQERLWESPTER 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1577574 1580358 + CmaCh11G003170.1 Cma11g00317 302826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00317 391 Gene3D - 264 302 - -
Cma11g00317 391 Gene3D - 303 341 - -
Cma11g00317 391 Gene3D - 342 375 - -
Cma11g00317 391 MobiDBLite consensus disorder prediction 80 101 - -
Cma11g00317 391 ProSiteProfiles Zinc finger RanBP2 type profile. 272 301 IPR001876 -
Cma11g00317 391 Pfam Zn-finger in Ran binding protein and others 311 338 IPR001876 -
Cma11g00317 391 Pfam Zn-finger in Ran binding protein and others 273 300 IPR001876 -
Cma11g00317 391 SUPERFAMILY Ran binding protein zinc finger-like 267 302 IPR036443 -
Cma11g00317 391 MobiDBLite consensus disorder prediction 242 263 - -
Cma11g00317 391 ProSitePatterns Zinc finger RanBP2-type signature. 276 295 IPR001876 -
Cma11g00317 391 ProSiteProfiles Zinc finger RanBP2 type profile. 311 340 IPR001876 -
Cma11g00317 391 MobiDBLite consensus disorder prediction 248 263 - -
Cma11g00317 391 SMART zf_4 313 337 IPR001876 -
Cma11g00317 391 SMART zf_4 346 372 IPR001876 -
Cma11g00317 391 SMART zf_4 274 298 IPR001876 -
Cma11g00317 391 PANTHER ASPARAGINE-RICH PROTEIN 34 302 - -
Cma11g00317 391 PANTHER ASPARAGINE-RICH PROTEIN 300 385 - -
Cma11g00317 391 ProSiteProfiles Zinc finger RanBP2 type profile. 344 373 IPR001876 -
Cma11g00317 391 Coils Coil 216 236 - -
Cma11g00317 391 SUPERFAMILY Ran binding protein zinc finger-like 306 340 IPR036443 -
Cma11g00317 391 PANTHER ZINC FINGER PROTEIN 300 385 - -
Cma11g00317 391 PANTHER ZINC FINGER PROTEIN 34 302 - -
Cma11g00317 391 ProSitePatterns Zinc finger RanBP2-type signature. 315 334 IPR001876 -
Cma11g00317 391 ProSitePatterns Zinc finger RanBP2-type signature. 348 367 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00317 - - - cmax:111497775 778.474
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00332 Cma11g00317 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00317 Cma-Chr11:1577574 Cma12g01222 Cma-Chr12:9529297 1.66E-07 dispersed
Cma05g01114 Cma-Chr5:8766781 Cma11g00317 Cma-Chr11:1577574 3.40E-68 transposed
Cma06g00068 Cma-Chr6:376918 Cma11g00317 Cma-Chr11:1577574 3.51E-38 transposed
Cma09g00670 Cma-Chr9:3161245 Cma11g00317 Cma-Chr11:1577574 6.84E-10 transposed
Cma15g00977 Cma-Chr15:5496744 Cma11g00317 Cma-Chr11:1577574 2.75E-77 transposed
Cma10g00332 Cma-Chr10:1528782 Cma11g00317 Cma-Chr11:1577574 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g196 . . . . . . . Bma12g01246 . . Cma10g00332 Cma11g00317 Car10g00314 Car11g00292 Sed08g0408 . Cpe04g01365 Bhi02g00151 Tan09g1810 Cmetu09g0719 . Hepe09g0397 . . Cla06g01415 Cam06g1568 Cec06g1628 Cco06g1620 Clacu06g1530 Cmu06g1484 Cre06g2293 . . . Cone19ag0337 . . . . . Blo15g00057 . . Bpe07g01050 . . . . Cmo10g00358 Cmo11g00322 . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01277 Csa01g00440 Chy02g02305 Cme02g01676
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007286 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 3 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00317 Cma_Chr11 FPKM 1.131591 0.859355 0.876572 1.046183 3.08063 3.960481 3.222972 2.275296 2.38879 2.312786