Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00320 ATGGCTGTTTTTACACATGGAATCCCCAATTCCCGAATCTTCTGCGAAAGAGAGGGAACCTTGTTTTTAGGTTTTTCGGCTGCTCCAGTCTTGCCACAGAGGGCGAGAGTTTACCGACATTTTGCCAGAGAGAGAGGAAGTAGTCAAAGGTTGTCAAAAAAGGAACCTATTGATTTCCCAACGAAAGGATTCTTTGGCACAAAGAAAGTTGTCCTCACTGTCCCTAGGGACAGTAGCTCTTCAAACGCCAGCAGCAGCGAGGATGATCCGACAAATCAATCCAAGTCCACAAAAACAAAAGTGAACAATGCTTTACTGGGAATTGAAATCTCACAAACACCTTTTGGTTACACAAGGAAGGATGTTCTATTAATTGGATTGGGTGTCACAGTTCTTGGATTTGGGTTGAAAAGTGGATTAGAGTTTGCTGGGTTTGATCCTATGCAAGCAGGTAACGTGGTTCAGCTTGTACTGGTTTTGGGTTTAACGCTTGCATGGATTTCCACATATATGTTTAGAGTTTCAAATAAGGATATGACATATGCTCAACAACTACGTGACTACGAAGACAAAGTCATGGAGAAACGCCTGGAGAGCCTTACCGAAGCAGAGCTCGTAGCATTGCTCGAACAAGTCGAGGAAGAGAAAAGCCAATCAGCGAGTGGCGAACAGACAAACCCTAATTCGGCCATTGAGATGGCAATTGTTACCGGAGATCGATATTTGGAGAAGTTGGTGAAGTTTGTGGAGGAACACGCCGATCCTCTGATTGAAGGAACTTCGGTGTTGAAGCTAAATCCAGCGGGATTGCACTATGTGCAGTCGAGGTTGGAGGCCTTACATGAACTCGAGAGTCTTTTAACCGGAGCTCCAGTTGACTACCTTCGCGCTTATGTCTCCGACCTTGGCGACCACCGCGCGCTTGAGCAGCTCCGACGAATTCTGAGACTGCTCACATCTCTGAAGGTCGTTTCGGTGCTTCCGCAGCCGTTGCGAGACCCGACACCGCTGTCTCTGTTGCCGTTTGGAAGTCTGAAGGTTTTGGAGCTCAGAGGATGCGATTTGTCGACCTCGGCGGCGAGAGGATTGCTGGAGTTGAGGCAAACCTTGGAGAAGATCATTTGTCACAATTCTACTGATGCTCTGCGGCATGTGTTTGCAAGTAGGATTGTGGAGGTTAAGAATTCTGCACAATGGAGCCGATTGTCATTTGTTTCATGTGCGTGCAATGGCTTAGTTCTCATGGACGAGTCTTTGCAACTTCTACCTGCTGTTGAAACCCTTGATCTGAGCCGAAATAAGTTTGCAAAAGTGGACAATCTTCGCAAGTGTGTGAAACTGAAACATTTGGATCTTGGTTTTAATCATCTAAGGACAGTTGCCTCTTTTACTGAGCTGAAGTTAGATGACAAGGGAATCTGCAAAAGAGAATATTGGAAGAGGAAAATTATCATTGCTAGCAGGCAAAAGCGACCTGCCAGTTTTGGATTTTATTCCCCTGCAAAAGATGGTGCGCAAGGAGAGGGAAGCATAAACAGGAAAAAGAAGACAATTTCTCGAATTGCTTCTATTCAGAGTGAGGAAGAGAGTACTTATTTTTGTTCTGACCAGGAGTCCGTATGCTGTGATAATGAGACTCAAAGCAGAGGGGAAGCAGCATTATCTGATAATGAAGTTGAAGCAGTTGATTTGATGAAGAAAATTGAATTTATTAAGAAAGAGCGTTCTGCACTTTGGCTGCGGGAGTTCGAGGACTGGATGGATCGTGCTCCTCCAAATACTGTGAATGGCAATATCAACATGGCTATTTTGCACCCTGGGAAAGAAAATTATTTGAAAAGTAGGAAAACTGCACATCATGTTGGTGAGAGTTCAAGATATAAATCAGAGTCTATACAAGCATCAGGAGATGAAAGTAGTACAAATTTTGTGGAGTCAGATAGTTCCTTTGTAGACATACCTAGTGGTTTGACTACCTCGCATTACTTTGGCCTGAATGGGACTCTGGGTAATGATGTCGAAGTGCCCTTATCTAGAACACAGAGATTGGATCATAAAAGTAGTCACCTTAGTTCTTCATTTGAAGGAATCGATAGTCCATCCACCCATGTGAAAAGCTTTCATCCTTCGTATAATAGGTTCCAGGGAGGTCAAGCAAAGGTTGAAGATGGTAGTATGTCACCATTGTATGCCATTGATAGTATATCTGAGTCTCACTCTTCCTCAGCGTTCCCTGGATCACCACCCCATTATCAAGAAGATATTCTTCACCGCCGACATAACTTCATGGAAGAGATTTTGCAATTATCTGCAGAGTCATATTCAGTTCCTTCCTCTGATAGCTATTCCAGCAGTAGTGAGGATGATATCTTTCCCTTTGAACCATTAATGCAAGAAGTTATTCAACCTACAGAGGATAACTCTATACGTGGAAGTGCTGAAGGTCAATTGTCATTAGATCATAGTAAAGGCGGTACCTCTAAACAGTGTCATGAACATCTGGTGGGAGAAAATGGCCTGTGCCATTTTGATTCATCAGTTGATCAATTATCTAGCATGCAGAAGTCTGTTTTGCAAGGCTCCAGCATGCAGTTGCCTTGCAATGTTTTTCCTGCTGACGCTCATGCCTATGGAACCGATCATTCAATCCAATATGAGAACAGTAAGCTGAGGAACAGAGAAAGCAAAAGAAAAGTGAAAAAAAGAGTTGTTTCATTGTCAGGACATACTGTAGTTGGAATGACAGACAAGCACAAAGGGACAAGTTGTGATCGGAGTGTTTCTGGAGCTGATATGGAAATTGAATTGGAAAATGATAAATTTATTGAAAACTATTTCAATTTAAATATTGCAGATTCTGGAGTTCATGAAACTTGTCGGCAGTATCTCAAATGCATTTGTATACTTGATTCTGAGCTAGTCTACAGAAAAGTGGTTCTTTTACTTAGTAGTAGAAACAAGTTGTATGTACTTATTGTTCGAGCGGCTGGAGATGGTTCAGGAGCCATTCTTATTTTATCGGATTGTCACAATGTTGAAGATATTAAAGAGGTCTTTGTGGGCCTGGGGCTTCAGGTTGTGAGTTTGGAGCAGGTCCAGGTTGAATTATTTGAAAAACAAATATGTGGAGGTGCAAAAGCTAACTTACTTCAATATTCTATGGTGCTATTTTGTTGCAGTGAGATTCAAGAGTTCTCCTTGGTCCCCAAATCTGACGAGGAGGTCACCGCCATCAAGAAGGAGACGTCATCACTGTGCTCTACGAAATGGAAGATCAAATGGTTCCATGAAGAAAATCTAGTTAATTTCATTGCATTGGCGAAGGCAATCCACCTAGGAAGTAAGGAGTCCCCCTTGCCTTGTGGTGAGTGCATTCTTTTTAGTTTGTTGTCTTTGGATTACTAA 3405 42.7 MAVFTHGIPNSRIFCEREGTLFLGFSAAPVLPQRARVYRHFARERGSSQRLSKKEPIDFPTKGFFGTKKVVLTVPRDSSSSNASSSEDDPTNQSKSTKTKVNNALLGIEISQTPFGYTRKDVLLIGLGVTVLGFGLKSGLEFAGFDPMQAGNVVQLVLVLGLTLAWISTYMFRVSNKDMTYAQQLRDYEDKVMEKRLESLTEAELVALLEQVEEEKSQSASGEQTNPNSAIEMAIVTGDRYLEKLVKFVEEHADPLIEGTSVLKLNPAGLHYVQSRLEALHELESLLTGAPVDYLRAYVSDLGDHRALEQLRRILRLLTSLKVVSVLPQPLRDPTPLSLLPFGSLKVLELRGCDLSTSAARGLLELRQTLEKIICHNSTDALRHVFASRIVEVKNSAQWSRLSFVSCACNGLVLMDESLQLLPAVETLDLSRNKFAKVDNLRKCVKLKHLDLGFNHLRTVASFTELKLDDKGICKREYWKRKIIIASRQKRPASFGFYSPAKDGAQGEGSINRKKKTISRIASIQSEEESTYFCSDQESVCCDNETQSRGEAALSDNEVEAVDLMKKIEFIKKERSALWLREFEDWMDRAPPNTVNGNINMAILHPGKENYLKSRKTAHHVGESSRYKSESIQASGDESSTNFVESDSSFVDIPSGLTTSHYFGLNGTLGNDVEVPLSRTQRLDHKSSHLSSSFEGIDSPSTHVKSFHPSYNRFQGGQAKVEDGSMSPLYAIDSISESHSSSAFPGSPPHYQEDILHRRHNFMEEILQLSAESYSVPSSDSYSSSSEDDIFPFEPLMQEVIQPTEDNSIRGSAEGQLSLDHSKGGTSKQCHEHLVGENGLCHFDSSVDQLSSMQKSVLQGSSMQLPCNVFPADAHAYGTDHSIQYENSKLRNRESKRKVKKRVVSLSGHTVVGMTDKHKGTSCDRSVSGADMEIELENDKFIENYFNLNIADSGVHETCRQYLKCICILDSELVYRKVVLLLSSRNKLYVLIVRAAGDGSGAILILSDCHNVEDIKEVFVGLGLQVVSLEQVQVELFEKQICGGAKANLLQYSMVLFCCSEIQEFSLVPKSDEEVTAIKKETSSLCSTKWKIKWFHEENLVNFIALAKAIHLGSKESPLPCGECILFSLLSLDY 1134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1587033 1601317 + CmaCh11G003200.1 Cma11g00320 302829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00320 1134 Gene3D Ribonuclease Inhibitor 179 468 IPR032675 -
Cma11g00320 1134 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 1071 1121 - -
Cma11g00320 1134 PANTHER NISCHARIN RELATED 234 464 - -
Cma11g00320 1134 PANTHER NISCHARIN RELATED 1071 1121 - -
Cma11g00320 1134 PANTHER NISCHARIN RELATED 465 1028 - -
Cma11g00320 1134 SUPERFAMILY L domain-like 313 462 - -
Cma11g00320 1134 MobiDBLite consensus disorder prediction 620 640 - -
Cma11g00320 1134 MobiDBLite consensus disorder prediction 76 98 - -
Cma11g00320 1134 ProSiteProfiles Leucine-rich repeat profile. 446 467 IPR001611 GO:0005515
Cma11g00320 1134 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 1028 1069 - -
Cma11g00320 1134 PANTHER NISCHARIN RELATED 1028 1069 - -
Cma11g00320 1134 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 465 1028 - -
Cma11g00320 1134 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 234 464 - -
Cma11g00320 1134 Pfam Protein of unknown function (DUF3007) 118 213 IPR021562 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00320 - - - bhj:120071716 1098.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00335 Cma-Chr10:1555617 Cma11g00320 Cma-Chr11:1587033 1.03E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g131 . . . . . . . . . . . Cma11g00320 . Car11g00295 . . . . . . . . . . . . . . . . . Cone2ag0777 . . . . . . . . . . . . . . . . . Cmo11g00325 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010273 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00320 Cma_Chr11 FPKM 5.487583 6.206755 11.514598 10.962973 20.277044 21.421812 21.340317 11.158108 10.531509 11.045362