Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00327 ATGGCAAGCCCATCTCCACCGCCGGCCACCTCCACCACCTTCACCATCCTTCTCATTTTGATTTCCTTTGAGGTCTTTTCATCGAAGGCTGCTTCTACAGATGCAGAAGCGCTTCTCAAGTTCAAAGGGTCTCTCGAAATGAGCAATGATGTGTTGGGAAATTGGGCCGCCGGGTCCTCCCCTTGCACCGGCGACAAGGCGAACTGGGTCGGAATTCTTTGCGAGAAGGGGAATGTCTGGGGATTGAAGCTGGAAAACATGGGGCTCAAGGGTCACATTGACGTTGAGTCTCTGGAAGGGGTGCCCCAATTAAGGTCAATCAGTCTTATGAAGAATGACTTCGATGGGTCTCTGCCGGACGTCAAGAGACTCGGGGCATTGAAATCTCTGTATTTGTCAGGAAACCACTTCTCAGGGGACATTCCTGGGGATAAATTTTCAAGCATGTTGTCTTTGAAGAAAGTTCATTTGGCTCAGAACCATCTGGAGGGGCAGATTCCTTGGTCCTTGGCTGAGTTGCCTCGATTGTTGGAGCTCAGGCTTGAAGGGAACCACTTTTCTGGCCAAATTCCTAATTTTGCGCAGAAGACATTGAAGGTCTTTAATGTCTCCGGCAATGAACAACTTCGTGGCTCAATCCCACGAGCTTTCAGCAACTTCGATCCATCCTCCTTTACAGGCCTTCACTGTTTATGTGGAAAACCACTTGATAACCCATGCACCACTTCAAAAATGCCATCAATTGCGAGCATCATAATGGTTTCAATAGCTGTGACAGCGGCTCTACTTGCCATCGGAGCCGGAATAGTCATCCTTAGCCGTCGAAACCAATCGTCTTCTAATGAAGAGAATCCAGCCCACAGCAAATCTCCAAATGCTAGTGCGTCAAGTCCAGCAATCGGGTCGAGGTCACCCGATCGAGGCTCCAGTCATGGAAGCGGAGCGGGTAAACGGGCAGCCGAGAGTGCTAAGTTGTCATTTGTAAGAGATGATACAGAGAGGTTTGATTTATCAGACTTGCTTAAAGCCAATGCAGAAATCCTAGGAAGTGGATGCTTTGGATCTTCCTACAAAGCAGCCTTGACCAATGGACCTGTGATGGTTGTGAAGAGATTCAAGCAAATGAACAATGTGGACAGAGAGGAATTCCAAGAACATATGAGGAGAATTGGAAGGTTGAAACACCCCAACTTACTTCCTCTCGTCGCCTACTACTACAAAAAGGAAGAAAAACTTCTCATTACAAACTATGTTGAGAAGGGTAGCTTGGCTGTTCAACTTCACGGGCACCAAGCCGTGGGACAACCAGCCATTGATTGGCCTTCAAGGTTGAAGATCATCAAGGGCGTTGCAAAGGGTCTTCGTTATCTCTATGCTGAACTTCCGAGTCTTATAACCCCACACGGCCATCTCAAGTCCTCAAATGTCCTTCTCAAGGCCAATTTTGAGCCCCTTCTTTCAGACTATGGCTTGATCCCGGTTGTGAACCAAGAACACGCCCAAGAGCAAATGGTGGCTTACAAATCTCCCGAGTACACTCAACTAGGTCGCATCACAAAAAAGACAGACGTGTGGAGCTTTGGGATGTTGATCTTTGAGATTCTAACTGGGAAATTCCCAGCCAACTTTCTGCATCAGAGCAAGAGTGGCGGCGATGAGGAAAATTTGGCAAGTTGGGTCAAATCTATTCCTGAAAAAGAATGGATCGGCCAAGTGCTTGATAAGGACATGGGGCCAACCAAGAACAGTGATGGTGAGATTACGAAGCTACTGAAGATTGCAATAGCATGTTGCGAGAGCGACTTCGAGAAGAGAATGGATTTGCGAGAGGTTGTGGAGAAGATCGAGGAGTTGAAAGAAAAAGATGGGGATGAAGATTTCTATTCATCATACGCAAGTGAAGCTGATATTAGATCTTCAAGAGGGTTATCTGACGAACTCAATTTCGCCATATGA 1956 47.09 MASPSPPPATSTTFTILLILISFEVFSSKAASTDAEALLKFKGSLEMSNDVLGNWAAGSSPCTGDKANWVGILCEKGNVWGLKLENMGLKGHIDVESLEGVPQLRSISLMKNDFDGSLPDVKRLGALKSLYLSGNHFSGDIPGDKFSSMLSLKKVHLAQNHLEGQIPWSLAELPRLLELRLEGNHFSGQIPNFAQKTLKVFNVSGNEQLRGSIPRAFSNFDPSSFTGLHCLCGKPLDNPCTTSKMPSIASIIMVSIAVTAALLAIGAGIVILSRRNQSSSNEENPAHSKSPNASASSPAIGSRSPDRGSSHGSGAGKRAAESAKLSFVRDDTERFDLSDLLKANAEILGSGCFGSSYKAALTNGPVMVVKRFKQMNNVDREEFQEHMRRIGRLKHPNLLPLVAYYYKKEEKLLITNYVEKGSLAVQLHGHQAVGQPAIDWPSRLKIIKGVAKGLRYLYAELPSLITPHGHLKSSNVLLKANFEPLLSDYGLIPVVNQEHAQEQMVAYKSPEYTQLGRITKKTDVWSFGMLIFEILTGKFPANFLHQSKSGGDEENLASWVKSIPEKEWIGQVLDKDMGPTKNSDGEITKLLKIAIACCESDFEKRMDLREVVEKIEELKEKDGDEDFYSSYASEADIRSSRGLSDELNFAI 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1639465 1641933 + CmaCh11G003270.1 Cma11g00327 302836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00327 651 ProSiteProfiles Protein kinase domain profile. 342 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00327 651 MobiDBLite consensus disorder prediction 279 318 - -
Cma11g00327 651 Pfam Leucine rich repeat 127 186 IPR001611 GO:0005515
Cma11g00327 651 MobiDBLite consensus disorder prediction 279 309 - -
Cma11g00327 651 Gene3D Ribonuclease Inhibitor 33 147 IPR032675 -
Cma11g00327 651 Pfam Protein tyrosine and serine/threonine kinase 346 615 IPR001245 GO:0004672|GO:0006468
Cma11g00327 651 Gene3D Transferase(Phosphotransferase) domain 1 418 637 - -
Cma11g00327 651 Gene3D Phosphorylase Kinase; domain 1 310 417 - -
Cma11g00327 651 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 629 - -
Cma11g00327 651 SUPERFAMILY Protein kinase-like (PK-like) 346 617 IPR011009 -
Cma11g00327 651 SUPERFAMILY L domain-like 32 229 - -
Cma11g00327 651 Gene3D Ribonuclease Inhibitor 148 241 IPR032675 -
Cma11g00327 651 Pfam Leucine rich repeat N-terminal domain 32 74 IPR013210 -
Cma11g00327 651 PANTHER POLLEN RECEPTOR-LIKE KINASE 5 11 629 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00001 Cma-Chr1:1425 Cma11g00327 Cma-Chr11:1639465 0 dispersed
Cma09g00540 Cma-Chr9:2414500 Cma11g00327 Cma-Chr11:1639465 1.08E-177 dispersed
Cma11g00327 Cma-Chr11:1639465 Cma14g01180 Cma-Chr14:9442176 0 dispersed
Cma10g00345 Cma-Chr10:1598790 Cma11g00327 Cma-Chr11:1639465 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68878 PF07714 PK_Tyr_Ser-Thr 6.90E-32 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00327 - - csv:101213261 990.334