Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00340 ATGGGCACCCTTCCCGATTCCTTCTTATTCTCTCTGATTTTCCTCTTCACCGTCGTCTCTCCAGCCGCCGCCGCCGCCGCCCTCCCCGGCGATCCTTCTCTACACCTTTTGCTTCCTCACCCAATTCTGTATCGCTTCAAGGCCATACAGGAAACTGTTTTTGATGCTTCTCCATCTCCCCCACCGCCGCCGTTGCCCTCTCCTCCTCCACCGGAAGACAAACCCGTCTACTCTACGTTCCGGCCTAGCATGGCGGTGGTTGTCGGCGTTCTCACTACCACTTTCTCTATCACGTTCCTTCTCCTTCTCTACGCCAAGCACTGCAAGCGTGGGAATGCGGTGGTGGTTGGGTACTCGAGATATCCCAATTCGGTGATGGGCGCTCCGAGCTTCACGACGAGGAAGAACTCCGGCATCGACCAGGCGGTAATTGAATCGCTGCCGATTTTTCGATTTGGGTCGTTGAGCGGTCAAAAGGAAGGCCTCGAATGCGCCGTTTGCCTCGACAAATTCGAACAAACGGAGATTCTTAGACTCCTTCCGAAATGCAAACACGCGTTCCATGTCGAGTGTGTCGATACTTGGCTTGACGCCCACTCCACTTGCCCTCTCTGCCGCTACCGAGTCGACCCGGAGGACGTCTTATTAATCGAAGACGTCAATATATTTCTCTACAACCCGGCGCCGGCGCCGCCTCCGCTGCCTCCGCCGCGGGATTCAAACTCTAAGGATGTAGTATTGAACTTAGAACAGGGGAGAAAAAGTGGCAAGGCTGGATCCGGGAGAGTCTCCGGCAGACACTCATCGGTGGGTGAGAAGCGAACCGGTGAATCCAGTCGCCGAGATCCGGCATTGTTGAGACGATCCCTCGACAGCAAGAGAAGCGAAACGGTGGCCATCGGGTGCTTCGATCGGCACCGGAAGGACGGGCTACTTTTGCCGGACGAGAAAACTAATCAGAATCAGAATCAGAGCAGATTCGAGCACCGGATCATAGTGTCGCCAAGGGCGCCGGTGGTGGTACAGGGGCAGCAGAGATGGAGCGATGTACATGCGTCGGATTTGCTGTATCTACGGTCAGAAATGATAATATCTGACAGCCGCAGGTTTTCGGTAGCTTCATTACCATCGGAATTAAAGAGACAGCGACGGATGGGGATCATGGGGAAGCATGCCGGAAAAGGGACCGGGTTGATGATGGCAGACGTGTAA 1212 54.95 MGTLPDSFLFSLIFLFTVVSPAAAAAALPGDPSLHLLLPHPILYRFKAIQETVFDASPSPPPPPLPSPPPPEDKPVYSTFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSRYPNSVMGAPSFTTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLDKFEQTEILRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLIEDVNIFLYNPAPAPPPLPPPRDSNSKDVVLNLEQGRKSGKAGSGRVSGRHSSVGEKRTGESSRRDPALLRRSLDSKRSETVAIGCFDRHRKDGLLLPDEKTNQNQNQSRFEHRIIVSPRAPVVVQGQQRWSDVHASDLLYLRSEMIISDSRRFSVASLPSELKRQRRMGIMGKHAGKGTGLMMADV 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1698789 1700000 + CmaCh11G003400.1 Cma11g00340 302849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00340 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 213 IPR013083 -
Cma11g00340 403 MobiDBLite consensus disorder prediction 251 288 - -
Cma11g00340 403 MobiDBLite consensus disorder prediction 267 288 - -
Cma11g00340 403 PANTHER RING-H2 FINGER PROTEIN ATL43 56 385 - -
Cma11g00340 403 ProSiteProfiles Zinc finger RING-type profile. 164 206 IPR001841 -
Cma11g00340 403 Pfam Ring finger domain 163 206 IPR001841 -
Cma11g00340 403 MobiDBLite consensus disorder prediction 55 74 - -
Cma11g00340 403 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 56 385 - -
Cma11g00340 403 SMART ring_2 164 205 IPR001841 -
Cma11g00340 403 MobiDBLite consensus disorder prediction 56 74 - -
Cma11g00340 403 SUPERFAMILY RING/U-box 144 211 - -
Cma11g00340 403 CDD RING-H2_PA-TM-RING 163 206 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00340 K19041 RNF38_44; E3 ubiquitin-protein ligase RNF38/44 [EC:2.3.2.27] - csv:101203916 587.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00516 Cma-Chr5:2466092 Cma11g00340 Cma-Chr11:1698789 2.53E-26 dispersed
Cma11g00340 Cma-Chr11:1698789 Cma08g01011 Cma-Chr8:6338113 2.06E-27 dispersed
Cma17g00882 Cma-Chr17:6732138 Cma11g00340 Cma-Chr11:1698789 1.62E-06 dispersed
Cma11g00340 Cma-Chr11:1698789 Cma11g00631 Cma-Chr11:3047631 6.46E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g969 . . . . Bpe01g00718 . . . . Cmo11g00343 . . . . Sed08g0438 Cpe04g01345 . Bhi02g00212 Tan09g1762 Cmetu02g1872 . Hepe09g0426 . . . . . . . . . . . . . . . . . . Blo14g00692 . . . . . . . . . . Cma11g00340 . Car11g00315 . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00993 . 84 570 C3H Transcription Factor Family AT2G31510 76.2 1.7e-230 795.8
Cma08g00211 . 72 559 C3H Transcription Factor Family AT2G31510 75.9 6.9e-227 783.9
Cma17g00596 . 102 606 C3H Transcription Factor Family AT2G31510 73.3 7.1e-224 773.9
Cma08g00211 . 55 531 C3H Transcription Factor Family AT2G31770 58.5 2.9e-170 595.9
Cma12g00993 . 53 529 C3H Transcription Factor Family AT2G31770 58.1 8.5e-170 594.3
Cma17g00596 . 86 564 C3H Transcription Factor Family AT2G31770 57.6 2.2e-165 579.7
Cma12g00993 . 67 529 C3H Transcription Factor Family AT2G31760 59.1 2.0e-168 589.7
Cma08g00211 . 55 524 C3H Transcription Factor Family AT2G31760 57.8 2.4e-166 582.8
Cma17g00596 . 86 571 C3H Transcription Factor Family AT2G31760 55.9 9.6e-163 570.9
Cma02g01617 . 1 193 C3H Transcription Factor Family AT3G03550 51.2 1.3e-49 194.5
Cma03g01117 . 792 953 C3H Transcription Factor Family AT5G06490 50.3 2.0e-44 176.4
Cma03g01117 . 792 953 C3H Transcription Factor Family AT5G06490 50.3 2.0e-44 176.4
Cma15g00221 CST 1 226 C3H Transcription Factor Family AT3G02290 61.1 2.9e-74 275.8
Cma04g02813 CST 332 550 C3H Transcription Factor Family AT3G02290 60.4 1.3e-71 266.9
Cma11g00552 . 1 306 C3H Transcription Factor Family AT1G11020 75.3 8.1e-136 480.7
Cma10g00580 . 1 302 C3H Transcription Factor Family AT1G11020 75.9 7.6e-134 474.2
Cma14g01188 . 59 218 C3H Transcription Factor Family AT1G50440 75.6 3.1e-68 255.8
Cma01g00002 . 28 209 C3H Transcription Factor Family AT1G50440 66.1 8.4e-66 247.7
Cma03g00037 . 8 369 C3H Transcription Factor Family AT5G08750 60.5 1.0e-118 424.1
Cma07g01264 . 1 353 C3H Transcription Factor Family AT5G08750 61.7 1.8e-115 413.3
Cma16g00245 . 7 532 C3H Transcription Factor Family AT3G16090 63.2 4.8e-172 601.7
Cma04g00386 . 1 533 C3H Transcription Factor Family AT3G16090 62.7 7.0e-171 597.8
Cma01g00933 . 31 185 C3H Transcription Factor Family AT1G22510 69.0 9.6e-58 220.7
Cma15g00221 CST 1 225 C3H Transcription Factor Family AT5G38895 57.1 2.3e-72 270.0
Cma04g02813 CST 332 550 C3H Transcription Factor Family AT5G38895 55.9 1.2e-68 257.7
Cma05g00220 . 37 243 C3H Transcription Factor Family AT1G19310 67.3 1.4e-78 290.0
Cma12g00497 CCT,CST,ECH 16 193 C3H Transcription Factor Family AT1G19310 70.8 2.6e-72 269.2
Cma03g01031 . 74 283 C3H Transcription Factor Family AT1G19310 59.4 6.1e-69 258.1
Cma07g00752 . 19 221 C3H Transcription Factor Family AT1G19310 58.8 1.4e-65 246.9
Cma01g00933 . 35 185 C3H Transcription Factor Family AT1G72175 69.5 2.8e-54 208.8
Cma14g02047 . 1 188 C3H Transcription Factor Family AT4G00335 50.8 7.2e-47 184.5
Cma03g00789 . 3 254 C3H Transcription Factor Family AT2G22120 82.6 3.1e-123 439.1
Cma05g00467 . 71 178 C3H Transcription Factor Family AT5G07040 65.7 1.3e-38 156.8
Cma11g00257 CST 1 389 C3H Transcription Factor Family AT1G18470 76.1 1.5e-177 619.8
Cma10g00248 CST 61 420 C3H Transcription Factor Family AT1G18470 67.4 8.5e-141 497.7
Cma04g02006 . 11 362 C3H Transcription Factor Family AT1G18470 54.2 7.0e-111 398.3
Cma19g00468 CST 127 281 C3H Transcription Factor Family AT4G33565 53.1 5.6e-40 162.5
Cma15g00931 . 67 300 C3H Transcription Factor Family AT1G68200 50.2 2.0e-51 200.3
Cma08g00211 . 55 531 C3H Transcription Factor Family AT2G31770 58.5 2.9e-170 595.9
Cma12g00993 . 53 529 C3H Transcription Factor Family AT2G31770 58.1 8.5e-170 594.3
Cma17g00596 . 86 564 C3H Transcription Factor Family AT2G31770 57.6 2.2e-165 579.7
Cma12g00993 . 67 529 C3H Transcription Factor Family AT2G31760 59.1 2.0e-168 589.7
Cma08g00211 . 55 524 C3H Transcription Factor Family AT2G31760 57.8 2.4e-166 582.8
Cma17g00596 . 86 571 C3H Transcription Factor Family AT2G31760 55.9 9.6e-163 570.9
Cma09g01026 CST 45 272 C3H Transcription Factor Family AT5G55970 69.0 2.9e-93 339.3
Cma01g01063 CST 20 276 C3H Transcription Factor Family AT5G55970 60.5 3.9e-90 328.9
Cma09g01025 . 32 272 C3H Transcription Factor Family AT5G55970 63.9 2.0e-89 326.6
Cma03g00037 . 8 369 C3H Transcription Factor Family AT5G63780 58.2 8.5e-113 404.4
Cma07g01264 . 1 353 C3H Transcription Factor Family AT5G63780 55.7 1.7e-105 380.2
Cma06g00107 . 1 423 C3H Transcription Factor Family AT3G58030 53.1 1.1e-106 384.4
Cma14g00411 . 53 464 C3H Transcription Factor Family AT3G58030 51.4 3.8e-96 349.4
Cma09g01026 CST 38 336 C3H Transcription Factor Family AT4G26580 62.7 1.1e-111 400.6
Cma01g01063 CST 35 343 C3H Transcription Factor Family AT4G26580 61.4 1.9e-111 399.8
Cma09g01025 . 41 340 C3H Transcription Factor Family AT4G26580 63.3 2.1e-110 396.4
Cma09g01201 . 8 143 C3H Transcription Factor Family AT4G10150 56.4 1.2e-43 174.1
Cma04g01053 . 107 589 C3H Transcription Factor Family AT5G01960 58.1 1.1e-148 523.9
Cma04g00096 . 1 482 C3H Transcription Factor Family AT5G01960 56.7 9.4e-148 520.8
Cma07g01198 CST 17 415 C3H Transcription Factor Family AT5G01960 65.4 2.6e-129 459.5
Cma03g00274 CST 11 407 C3H Transcription Factor Family AT5G01960 65.6 5.4e-127 451.8
Cma02g00241 CST 1 151 C3H Transcription Factor Family AT2G04240 58.0 5.3e-43 171.4
Cma20g00706 CST 134 287 C3H Transcription Factor Family AT2G04240 55.6 1.0e-41 167.2
Cma02g01275 CST 15 243 C3H Transcription Factor Family AT5G19430 56.6 1.2e-65 247.3
Cma20g00110 CST 15 237 C3H Transcription Factor Family AT5G19430 55.0 2.1e-62 236.5
Cma16g00511 . 134 567 C3H Transcription Factor Family AT5G45290 51.5 3.1e-95 346.7
Cma20g00110 CST 17 237 C3H Transcription Factor Family AT5G12310 52.9 3.5e-57 219.2
Cma02g01275 CST 17 243 C3H Transcription Factor Family AT5G12310 53.9 3.5e-57 219.2
Cma11g00340 . 78 373 C3H Transcription Factor Family AT5G05810 52.0 2.3e-74 276.9
Cma04g02928 CST 12 215 C3H Transcription Factor Family AT5G05830 56.9 7.4e-58 221.1
Cma06g00260 CCT,CST,ECH 71 232 C3H Transcription Factor Family AT5G05830 63.6 2.8e-57 219.2
Cma14g00100 CCT,CST,ECH 70 231 C3H Transcription Factor Family AT5G05830 59.9 5.0e-54 208.4
Cma07g01034 CCT,ECH 33 159 C3H Transcription Factor Family AT5G05830 62.0 1.6e-39 160.2
Cma15g00118 CST 57 192 C3H Transcription Factor Family AT5G05830 55.3 1.7e-38 156.8
Cma15g00221 CST 1 226 C3H Transcription Factor Family AT5G15790 60.1 2.1e-72 269.6
Cma04g02813 CST 332 550 C3H Transcription Factor Family AT5G15790 59.7 5.1e-71 265.0
Cma15g00098 CST 1 272 C3H Transcription Factor Family AT3G55530 80.2 6.7e-115 411.0
Cma04g02947 CST 1 257 C3H Transcription Factor Family AT3G55530 74.7 1.5e-101 366.7
Cma08g00363 . 1 273 C3H Transcription Factor Family AT1G63900 74.1 8.9e-115 410.6
Cma06g01221 . 10 393 C3H Transcription Factor Family AT2G44580 52.8 3.9e-116 415.6
Cma05g00220 . 41 166 C3H Transcription Factor Family AT1G74990 60.6 7.2e-41 164.1
Cma12g00497 CCT,CST,ECH 25 150 C3H Transcription Factor Family AT1G74990 60.9 3.6e-40 161.8
Cma07g00752 . 10 145 C3H Transcription Factor Family AT1G74990 52.1 1.1e-36 150.2
Cma01g01688 CCT 436 736 C3H Transcription Factor Family AT5G20910 60.0 3.9e-95 345.5
Cma16g00245 . 125 525 C3H Transcription Factor Family AT1G65040 56.6 2.5e-113 406.0
Cma04g00386 . 119 532 C3H Transcription Factor Family AT1G65040 53.6 8.7e-106 380.9
Cma03g01031 . 75 285 C3H Transcription Factor Family AT2G23780 62.1 9.7e-75 277.3
Cma07g00752 . 8 223 C3H Transcription Factor Family AT2G23780 57.8 2.5e-70 262.7
Cma05g00220 . 22 245 C3H Transcription Factor Family AT2G23780 56.5 5.1e-68 255.0
Cma12g00497 CCT,CST,ECH 6 191 C3H Transcription Factor Family AT2G23780 61.1 3.2e-62 235.7
Cma14g00506 CCT 1 317 C3H Transcription Factor Family AT3G10810 52.4 1.1e-78 291.6
Cma02g01434 . 1 170 C3H Transcription Factor Family AT1G63840 57.8 3.1e-46 182.2
Cma08g00893 . 41 189 C3H Transcription Factor Family AT1G63840 52.9 2.7e-42 169.1
Cma15g00981 . 34 345 C3H Transcription Factor Family AT1G68070 67.3 3.7e-118 422.2
Cma04g02103 . 8 347 C3H Transcription Factor Family AT1G68070 64.0 1.4e-114 410.2
Cma16g01019 . 47 376 C3H Transcription Factor Family AT1G68070 50.3 4.1e-85 312.4
Cma09g00033 CST 4 180 C3H Transcription Factor Family AT1G76410 55.9 6.1e-51 198.0
Cma06g00169 . 30 163 C3H Transcription Factor Family AT1G76410 61.2 5.2e-42 168.3
Cma05g00645 . 95 504 C3H Transcription Factor Family AT1G80400 54.4 1.0e-111 401.0
Cma12g00304 . 1 411 C3H Transcription Factor Family AT1G80400 51.3 7.0e-108 388.3
Cma06g00169 . 25 160 C3H Transcription Factor Family AT2G17450 60.7 8.3e-40 161.0
Cma12g00993 . 84 570 C3H Transcription Factor Family AT2G31510 76.2 1.7e-230 795.8
Cma08g00211 . 72 559 C3H Transcription Factor Family AT2G31510 75.9 6.9e-227 783.9
Cma17g00596 . 102 606 C3H Transcription Factor Family AT2G31510 73.3 7.1e-224 773.9
Cma03g01117 . 771 952 C3H Transcription Factor Family AT2G35910 58.3 1.5e-53 206.8
Cma14g00369 . 1 163 C3H Transcription Factor Family AT2G35910 52.1 7.2e-43 171.4
Cma07g01290 . 1 306 C3H Transcription Factor Family AT2G41980 80.5 2.1e-149 525.8
Cma03g00101 . 1 283 C3H Transcription Factor Family AT2G41980 85.5 1.3e-146 516.5
Cma18g01332 . 653 910 C3H Transcription Factor Family AT2G41980 80.6 1.2e-128 456.8
Cma18g00866 . 31 305 C3H Transcription Factor Family AT2G41980 75.1 1.2e-125 446.8
Cma04g01338 . 48 305 C3H Transcription Factor Family AT2G41980 79.5 1.6e-125 446.4
Cma15g00822 . 893 1150 C3H Transcription Factor Family AT2G41980 78.7 3.6e-125 445.3
Cma17g00559 . 43 301 C3H Transcription Factor Family AT2G41980 75.7 5.8e-123 438.0
Cma04g02211 . 114 371 C3H Transcription Factor Family AT2G41980 77.1 2.4e-121 432.6
Cma08g00110 . 44 302 C3H Transcription Factor Family AT2G41980 73.4 4.6e-120 428.3
Cma16g00047 . 631 926 C3H Transcription Factor Family AT2G41980 66.4 3.9e-111 398.7
Cma06g01434 CST 107 380 C3H Transcription Factor Family AT3G06140 61.2 9.5e-93 337.8
Cma14g01676 CST 119 392 C3H Transcription Factor Family AT3G06140 61.5 1.4e-91 334.0
Cma06g00374 CST 33 329 C3H Transcription Factor Family AT3G09770 59.0 1.4e-85 313.9
Cma14g00207 CST 34 331 C3H Transcription Factor Family AT3G09770 58.2 9.1e-85 311.2
Cma11g01553 . 132 698 C3H Transcription Factor Family AT3G26730 53.9 3.0e-162 569.7
Cma10g00129 CST 58 351 C3H Transcription Factor Family AT3G47990 71.7 1.6e-125 446.4
Cma11g00101 CST 58 369 C3H Transcription Factor Family AT3G47990 67.6 3.7e-122 435.3
Cma09g00033 CST 4 180 C3H Transcription Factor Family AT1G20823 58.4 1.0e-51 200.7
Cma06g00169 . 28 163 C3H Transcription Factor Family AT1G20823 64.4 2.0e-44 176.4
Cma20g00876 . 41 413 C3H Transcription Factor Family AT3G18930 54.8 6.4e-85 312.0
Cma16g01253 . 20 235 C3H Transcription Factor Family AT5G66070 73.6 1.9e-75 279.6
Cma06g00134 . 59 274 C3H Transcription Factor Family AT5G66070 73.1 2.7e-74 275.8
Cma06g00336 . 8 272 C3H Transcription Factor Family AT5G02750 53.1 1.6e-66 250.4
Cma11g00257 CST 5 467 C3H Transcription Factor Family AT1G73950 71.1 1.5e-188 656.4
Cma10g00248 CST 61 498 C3H Transcription Factor Family AT1G73950 65.6 3.5e-166 582.0
Cma04g02006 . 12 440 C3H Transcription Factor Family AT1G73950 52.4 1.5e-127 453.8
Cma09g01201 . 3 144 C3H Transcription Factor Family AT1G33480 59.2 2.7e-44 176.4
Cma15g00981 . 2 243 C3H Transcription Factor Family AT2G01735 59.0 1.7e-72 270.0
Cma04g02103 . 2 244 C3H Transcription Factor Family AT2G01735 58.1 8.5e-72 267.7
Cma06g00724 . 60 269 C3H Transcription Factor Family AT2G01735 55.2 4.7e-54 208.8
Cma16g01019 . 60 269 C3H Transcription Factor Family AT2G01735 54.5 2.6e-52 203.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012913 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00340 Cma_Chr11 FPKM 2.720297 3.353256 4.178562 3.014807 5.288595 3.937602 3.829123 2.410144 2.181872 1.66016