Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00340 | ATGGGCACCCTTCCCGATTCCTTCTTATTCTCTCTGATTTTCCTCTTCACCGTCGTCTCTCCAGCCGCCGCCGCCGCCGCCCTCCCCGGCGATCCTTCTCTACACCTTTTGCTTCCTCACCCAATTCTGTATCGCTTCAAGGCCATACAGGAAACTGTTTTTGATGCTTCTCCATCTCCCCCACCGCCGCCGTTGCCCTCTCCTCCTCCACCGGAAGACAAACCCGTCTACTCTACGTTCCGGCCTAGCATGGCGGTGGTTGTCGGCGTTCTCACTACCACTTTCTCTATCACGTTCCTTCTCCTTCTCTACGCCAAGCACTGCAAGCGTGGGAATGCGGTGGTGGTTGGGTACTCGAGATATCCCAATTCGGTGATGGGCGCTCCGAGCTTCACGACGAGGAAGAACTCCGGCATCGACCAGGCGGTAATTGAATCGCTGCCGATTTTTCGATTTGGGTCGTTGAGCGGTCAAAAGGAAGGCCTCGAATGCGCCGTTTGCCTCGACAAATTCGAACAAACGGAGATTCTTAGACTCCTTCCGAAATGCAAACACGCGTTCCATGTCGAGTGTGTCGATACTTGGCTTGACGCCCACTCCACTTGCCCTCTCTGCCGCTACCGAGTCGACCCGGAGGACGTCTTATTAATCGAAGACGTCAATATATTTCTCTACAACCCGGCGCCGGCGCCGCCTCCGCTGCCTCCGCCGCGGGATTCAAACTCTAAGGATGTAGTATTGAACTTAGAACAGGGGAGAAAAAGTGGCAAGGCTGGATCCGGGAGAGTCTCCGGCAGACACTCATCGGTGGGTGAGAAGCGAACCGGTGAATCCAGTCGCCGAGATCCGGCATTGTTGAGACGATCCCTCGACAGCAAGAGAAGCGAAACGGTGGCCATCGGGTGCTTCGATCGGCACCGGAAGGACGGGCTACTTTTGCCGGACGAGAAAACTAATCAGAATCAGAATCAGAGCAGATTCGAGCACCGGATCATAGTGTCGCCAAGGGCGCCGGTGGTGGTACAGGGGCAGCAGAGATGGAGCGATGTACATGCGTCGGATTTGCTGTATCTACGGTCAGAAATGATAATATCTGACAGCCGCAGGTTTTCGGTAGCTTCATTACCATCGGAATTAAAGAGACAGCGACGGATGGGGATCATGGGGAAGCATGCCGGAAAAGGGACCGGGTTGATGATGGCAGACGTGTAA | 1212 | 54.95 | MGTLPDSFLFSLIFLFTVVSPAAAAAALPGDPSLHLLLPHPILYRFKAIQETVFDASPSPPPPPLPSPPPPEDKPVYSTFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSRYPNSVMGAPSFTTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLDKFEQTEILRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLIEDVNIFLYNPAPAPPPLPPPRDSNSKDVVLNLEQGRKSGKAGSGRVSGRHSSVGEKRTGESSRRDPALLRRSLDSKRSETVAIGCFDRHRKDGLLLPDEKTNQNQNQSRFEHRIIVSPRAPVVVQGQQRWSDVHASDLLYLRSEMIISDSRRFSVASLPSELKRQRRMGIMGKHAGKGTGLMMADV | 403 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1698789 | 1700000 | + | CmaCh11G003400.1 | Cma11g00340 | 302849 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00340 | 403 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 213 | IPR013083 | - | |
Cma11g00340 | 403 | MobiDBLite | consensus disorder prediction | 251 | 288 | - | - | |
Cma11g00340 | 403 | MobiDBLite | consensus disorder prediction | 267 | 288 | - | - | |
Cma11g00340 | 403 | PANTHER | RING-H2 FINGER PROTEIN ATL43 | 56 | 385 | - | - | |
Cma11g00340 | 403 | ProSiteProfiles | Zinc finger RING-type profile. | 164 | 206 | IPR001841 | - | |
Cma11g00340 | 403 | Pfam | Ring finger domain | 163 | 206 | IPR001841 | - | |
Cma11g00340 | 403 | MobiDBLite | consensus disorder prediction | 55 | 74 | - | - | |
Cma11g00340 | 403 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 56 | 385 | - | - | |
Cma11g00340 | 403 | SMART | ring_2 | 164 | 205 | IPR001841 | - | |
Cma11g00340 | 403 | MobiDBLite | consensus disorder prediction | 56 | 74 | - | - | |
Cma11g00340 | 403 | SUPERFAMILY | RING/U-box | 144 | 211 | - | - | |
Cma11g00340 | 403 | CDD | RING-H2_PA-TM-RING | 163 | 206 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00516 | Cma-Chr5:2466092 | Cma11g00340 | Cma-Chr11:1698789 | 2.53E-26 | dispersed | |
Cma11g00340 | Cma-Chr11:1698789 | Cma08g01011 | Cma-Chr8:6338113 | 2.06E-27 | dispersed | |
Cma17g00882 | Cma-Chr17:6732138 | Cma11g00340 | Cma-Chr11:1698789 | 1.62E-06 | dispersed | |
Cma11g00340 | Cma-Chr11:1698789 | Cma11g00631 | Cma-Chr11:3047631 | 6.46E-35 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00340 | K19041 | - | csv:101203916 | 587.8 |