Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00340 ATGGGCACCCTTCCCGATTCCTTCTTATTCTCTCTGATTTTCCTCTTCACCGTCGTCTCTCCAGCCGCCGCCGCCGCCGCCCTCCCCGGCGATCCTTCTCTACACCTTTTGCTTCCTCACCCAATTCTGTATCGCTTCAAGGCCATACAGGAAACTGTTTTTGATGCTTCTCCATCTCCCCCACCGCCGCCGTTGCCCTCTCCTCCTCCACCGGAAGACAAACCCGTCTACTCTACGTTCCGGCCTAGCATGGCGGTGGTTGTCGGCGTTCTCACTACCACTTTCTCTATCACGTTCCTTCTCCTTCTCTACGCCAAGCACTGCAAGCGTGGGAATGCGGTGGTGGTTGGGTACTCGAGATATCCCAATTCGGTGATGGGCGCTCCGAGCTTCACGACGAGGAAGAACTCCGGCATCGACCAGGCGGTAATTGAATCGCTGCCGATTTTTCGATTTGGGTCGTTGAGCGGTCAAAAGGAAGGCCTCGAATGCGCCGTTTGCCTCGACAAATTCGAACAAACGGAGATTCTTAGACTCCTTCCGAAATGCAAACACGCGTTCCATGTCGAGTGTGTCGATACTTGGCTTGACGCCCACTCCACTTGCCCTCTCTGCCGCTACCGAGTCGACCCGGAGGACGTCTTATTAATCGAAGACGTCAATATATTTCTCTACAACCCGGCGCCGGCGCCGCCTCCGCTGCCTCCGCCGCGGGATTCAAACTCTAAGGATGTAGTATTGAACTTAGAACAGGGGAGAAAAAGTGGCAAGGCTGGATCCGGGAGAGTCTCCGGCAGACACTCATCGGTGGGTGAGAAGCGAACCGGTGAATCCAGTCGCCGAGATCCGGCATTGTTGAGACGATCCCTCGACAGCAAGAGAAGCGAAACGGTGGCCATCGGGTGCTTCGATCGGCACCGGAAGGACGGGCTACTTTTGCCGGACGAGAAAACTAATCAGAATCAGAATCAGAGCAGATTCGAGCACCGGATCATAGTGTCGCCAAGGGCGCCGGTGGTGGTACAGGGGCAGCAGAGATGGAGCGATGTACATGCGTCGGATTTGCTGTATCTACGGTCAGAAATGATAATATCTGACAGCCGCAGGTTTTCGGTAGCTTCATTACCATCGGAATTAAAGAGACAGCGACGGATGGGGATCATGGGGAAGCATGCCGGAAAAGGGACCGGGTTGATGATGGCAGACGTGTAA 1212 54.95 MGTLPDSFLFSLIFLFTVVSPAAAAAALPGDPSLHLLLPHPILYRFKAIQETVFDASPSPPPPPLPSPPPPEDKPVYSTFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSRYPNSVMGAPSFTTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLDKFEQTEILRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLIEDVNIFLYNPAPAPPPLPPPRDSNSKDVVLNLEQGRKSGKAGSGRVSGRHSSVGEKRTGESSRRDPALLRRSLDSKRSETVAIGCFDRHRKDGLLLPDEKTNQNQNQSRFEHRIIVSPRAPVVVQGQQRWSDVHASDLLYLRSEMIISDSRRFSVASLPSELKRQRRMGIMGKHAGKGTGLMMADV 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1698789 1700000 + CmaCh11G003400.1 Cma11g00340 302849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00340 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 213 IPR013083 -
Cma11g00340 403 MobiDBLite consensus disorder prediction 251 288 - -
Cma11g00340 403 MobiDBLite consensus disorder prediction 267 288 - -
Cma11g00340 403 PANTHER RING-H2 FINGER PROTEIN ATL43 56 385 - -
Cma11g00340 403 ProSiteProfiles Zinc finger RING-type profile. 164 206 IPR001841 -
Cma11g00340 403 Pfam Ring finger domain 163 206 IPR001841 -
Cma11g00340 403 MobiDBLite consensus disorder prediction 55 74 - -
Cma11g00340 403 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 56 385 - -
Cma11g00340 403 SMART ring_2 164 205 IPR001841 -
Cma11g00340 403 MobiDBLite consensus disorder prediction 56 74 - -
Cma11g00340 403 SUPERFAMILY RING/U-box 144 211 - -
Cma11g00340 403 CDD RING-H2_PA-TM-RING 163 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00516 Cma-Chr5:2466092 Cma11g00340 Cma-Chr11:1698789 2.53E-26 dispersed
Cma11g00340 Cma-Chr11:1698789 Cma08g01011 Cma-Chr8:6338113 2.06E-27 dispersed
Cma17g00882 Cma-Chr17:6732138 Cma11g00340 Cma-Chr11:1698789 1.62E-06 dispersed
Cma11g00340 Cma-Chr11:1698789 Cma11g00631 Cma-Chr11:3047631 6.46E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00340 K19041 - csv:101203916 587.8