Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00343 ATGAAGAGCTCTTCATCTCTGCTACATTCTCCAGTTTTCTTCTTTTTCCTGGGGATGCTAGTTGTGCTGGTGATCTTGCTGATTCTCATATTGATTTTTAGGAAATTTCTCACACCGAATAAATTGGTGAAGCTATTAACAGGAACAACTCAAGCATCGGCAGATTTGTTAAGCGAAAATCTCCACTCAATAAGTTACTTTGACTTTCACACACTGAAAAAGGCAACAAAGAACTTTAATCCGGCAAATCTTCTAGGCCTGGGAGGATTTGGACCCGTCTATCTGGGAACGCTAGAAGATGGAAGATTGGTAGCAATTAAAAGACTTTCACTAAACAAATCCCAACAAGGAGAACCAGAGTTTCTATCAGAGGTCAGACTGATAACAAGCATCCAACACAAGAACCTGGTTCGCCTGCTTGGTTGTTGCTCAGATGGGCCTCAACGGCTACTCGTGTATGAATACATGGAGAACAAGAGTTTGGATCTCATAATATATGGGGTAAGCGATCAATTCCTCAACTGGAATACCAGATTGAAGATTATCAGAGGCATTGCCAAAGGGTTGCAGTATCTACATGAGGATTCCCATCTAAGAATTATTCACCGAGACATCAAAGCAAGCAACATTCTTCTTGATGACAGATTTCAGCCAAAGATAGGAGATTTTGGGTTGGCCAGATTCTTCCCAGATGACCAAGCTTACCTAAGCACTACATTTGCTGGAACTCTAGGCTACACAGCACCAGAATATGCAATTAGGGGTGAACTGTCAGAAAAGGCAGATGTATACAGTTTTGGAGTTATTGTGCTTGAAATCATCAGTGGCAGAAAAAACACAAATCTTTCTCTACCAACAGAAATGCAGTATCTTCCAGAATATGCATGGAAACTATATGAGAGGTCTGCACTAATCGAGCTTGTGGATCCAAAGATGAAGGATGATGGATATGTGGAGAAGAATGTAGTACATGCAATTCAGGTTGCTTTGTTATGCCTTCAGCCTCATGGAAACCTGAGACCTGCAATGTCTGAGATTGTTGCCATGTTAACATACAAATTTGAAATCATTCAAACACCTTTGAAACCAGCCTTCTTGGAAAGAAGGCCTAAAAGGAACAGAGATCTCTCGTTGACTAATCATGCATATACCATTCCTTCTCCATTACAGTAA 1173 40.75 MKSSSSLLHSPVFFFFLGMLVVLVILLILILIFRKFLTPNKLVKLLTGTTQASADLLSENLHSISYFDFHTLKKATKNFNPANLLGLGGFGPVYLGTLEDGRLVAIKRLSLNKSQQGEPEFLSEVRLITSIQHKNLVRLLGCCSDGPQRLLVYEYMENKSLDLIIYGVSDQFLNWNTRLKIIRGIAKGLQYLHEDSHLRIIHRDIKASNILLDDRFQPKIGDFGLARFFPDDQAYLSTTFAGTLGYTAPEYAIRGELSEKADVYSFGVIVLEIISGRKNTNLSLPTEMQYLPEYAWKLYERSALIELVDPKMKDDGYVEKNVVHAIQVALLCLQPHGNLRPAMSEIVAMLTYKFEIIQTPLKPAFLERRPKRNRDLSLTNHAYTIPSPLQ 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1704050 1705945 - CmaCh11G003430.1 Cma11g00343 302852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00343 390 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 58 363 - -
Cma11g00343 390 ProSiteProfiles Protein kinase domain profile. 79 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00343 390 Gene3D Transferase(Phosphotransferase) domain 1 156 359 - -
Cma11g00343 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Cma11g00343 390 Pfam Protein kinase domain 83 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00343 390 SUPERFAMILY Protein kinase-like (PK-like) 58 351 IPR011009 -
Cma11g00343 390 PANTHER RECEPTOR-LIKE KINASE 58 363 - -
Cma11g00343 390 Gene3D Phosphorylase Kinase; domain 1 50 155 - -
Cma11g00343 390 SMART serkin_6 79 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00343 390 CDD STKc_IRAK 85 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00343 Cma-Chr11:1704050 Cma19g01094 Cma-Chr19:9079003 6.38E-105 dispersed
Cma11g00343 Cma-Chr11:1704050 Cma01g01261 Cma-Chr1:9083769 2.07E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68879 PF00069 Pkinase 6.50E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00343 - - cmax:111497330 713.375