Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00346 | ATGGGAGACCAAGACGACCTCTGCAACATCAGGCTCGGCCTCAGCCTCGGCTCTGGATTTGGCGAATACGTCCCCAAAAAGATGCAGAAAATCAACCCTAAATCCTTCACTGACCTCTCCTTCACCCTGGTTCCGAAGCAAGAATTGCCCATTAATTCAACCACTACCAACAGCCTCGGCTCCGAACGTGAAAGAGAGAGAAAAAAGCTTCGGCTTTCTAAAGAACAAGCCACTTTGCTCGAAGAAAGCTTCAAACTTCACACCACTTTGAATCCTGCTCAGAAACAGGCACTTGCCCACCAATTAAACCTCAAAACACGACAAGTGGAAGTCTGGTTCCAAAACAGACGTGCAAGGACGAAATTGAAGCAAACGGAAGTGGACTGCGAGTTCTTGAAGAAATGCTGCGAGAGGCTGAACGAAGAGAATCGGAGGTTGAAGAAAGAGTTGCATGAATTAAGATCCATCAAACTCGGAGCTTCCCAGTTGTATATTCAGCTCCCCAAGGCGGCGACGCTCACAATTTGCCCCTCATGCGACAAGATCACCAGGACACCCGCCGCCAACGCCGCCGTCGAGCCCAACTCTCCGCCACTGTAA | 600 | 50.0 | MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINPKSFTDLSFTLVPKQELPINSTTTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLTICPSCDKITRTPAANAAVEPNSPPL | 199 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1713075 | 1714183 | - | CmaCh11G003460.1 | Cma11g00346 | 302855 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00346 | 199 | SMART | HOX_1 | 65 | 127 | IPR001356 | GO:0003677 | |
Cma11g00346 | 199 | Coils | Coil | 122 | 156 | - | - | |
Cma11g00346 | 199 | Gene3D | - | 71 | 121 | - | - | |
Cma11g00346 | 199 | SMART | halz | 123 | 166 | IPR003106 | GO:0006355|GO:0043565 | |
Cma11g00346 | 199 | SUPERFAMILY | Homeodomain-like | 53 | 124 | IPR009057 | - | |
Cma11g00346 | 199 | ProSiteProfiles | 'Homeobox' domain profile. | 63 | 123 | IPR001356 | GO:0003677 | |
Cma11g00346 | 199 | Pfam | Homeobox associated leucine zipper | 123 | 155 | IPR003106 | GO:0006355|GO:0043565 | |
Cma11g00346 | 199 | PANTHER | - | 61 | 185 | - | - | |
Cma11g00346 | 199 | Pfam | Homeodomain | 67 | 121 | IPR001356 | GO:0003677 | |
Cma11g00346 | 199 | ProSitePatterns | 'Homeobox' domain signature. | 98 | 121 | IPR017970 | GO:0000981|GO:0006355 | |
Cma11g00346 | 199 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 | 61 | 185 | - | - | |
Cma11g00346 | 199 | CDD | homeodomain | 67 | 124 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g00346 | Cma-Chr11:1713075 | Cma07g00621 | Cma-Chr7:2669609 | 1.74E-55 | dispersed | |
Cma10g00356 | Cma-Chr10:1650067 | Cma11g00346 | Cma-Chr11:1713075 | 5.54E-95 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35802 | PF00046 | Homeodomain | 3.00E-16 | CL0123 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00346 | K09338 | - | csv:101203427 | 244.588 |