Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00346 ATGGGAGACCAAGACGACCTCTGCAACATCAGGCTCGGCCTCAGCCTCGGCTCTGGATTTGGCGAATACGTCCCCAAAAAGATGCAGAAAATCAACCCTAAATCCTTCACTGACCTCTCCTTCACCCTGGTTCCGAAGCAAGAATTGCCCATTAATTCAACCACTACCAACAGCCTCGGCTCCGAACGTGAAAGAGAGAGAAAAAAGCTTCGGCTTTCTAAAGAACAAGCCACTTTGCTCGAAGAAAGCTTCAAACTTCACACCACTTTGAATCCTGCTCAGAAACAGGCACTTGCCCACCAATTAAACCTCAAAACACGACAAGTGGAAGTCTGGTTCCAAAACAGACGTGCAAGGACGAAATTGAAGCAAACGGAAGTGGACTGCGAGTTCTTGAAGAAATGCTGCGAGAGGCTGAACGAAGAGAATCGGAGGTTGAAGAAAGAGTTGCATGAATTAAGATCCATCAAACTCGGAGCTTCCCAGTTGTATATTCAGCTCCCCAAGGCGGCGACGCTCACAATTTGCCCCTCATGCGACAAGATCACCAGGACACCCGCCGCCAACGCCGCCGTCGAGCCCAACTCTCCGCCACTGTAA 600 50.0 MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINPKSFTDLSFTLVPKQELPINSTTTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLTICPSCDKITRTPAANAAVEPNSPPL 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1713075 1714183 - CmaCh11G003460.1 Cma11g00346 302855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00346 199 SMART HOX_1 65 127 IPR001356 GO:0003677
Cma11g00346 199 Coils Coil 122 156 - -
Cma11g00346 199 Gene3D - 71 121 - -
Cma11g00346 199 SMART halz 123 166 IPR003106 GO:0006355|GO:0043565
Cma11g00346 199 SUPERFAMILY Homeodomain-like 53 124 IPR009057 -
Cma11g00346 199 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677
Cma11g00346 199 Pfam Homeobox associated leucine zipper 123 155 IPR003106 GO:0006355|GO:0043565
Cma11g00346 199 PANTHER - 61 185 - -
Cma11g00346 199 Pfam Homeodomain 67 121 IPR001356 GO:0003677
Cma11g00346 199 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981|GO:0006355
Cma11g00346 199 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 61 185 - -
Cma11g00346 199 CDD homeodomain 67 124 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00346 Cma-Chr11:1713075 Cma07g00621 Cma-Chr7:2669609 1.74E-55 dispersed
Cma10g00356 Cma-Chr10:1650067 Cma11g00346 Cma-Chr11:1713075 5.54E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35802 PF00046 Homeodomain 3.00E-16 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00346 K09338 - csv:101203427 244.588