Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00350 | ATGGCCATCGACCTCGCAGCGTTTCCGGCCACCATTGACGACCAAACCGCCATCCAAGATGCCGCCTCCGCCAGTTTACAGAGCATGGAGAATCTAATCCGTCTCTTATCCAAACAACAACCCACTCAAAAAATCGCCGATCTCGATTGCTCTCAAGTCACCGATTTCACCGTCTCCAAATTCAAGCGATTCATTTCCCTCATCAACCGCACCGGCCACGCCCGGTTCCGTCGCGGTTCTTCCTCTGTTTCCGTTCTCAATTCTCTCGATCCACTTCCCAGTTCCTCCACTATTGATTTCCTTAAATCGCCCGATTCCAAGGCTCCGACTGAGTCCACTACGACCTCGTCTCTCATGTCCACGATCACCGGCGACGGAAGCGTTTCCAACGAAAAGCTTGGTCTGTCACTCTTCACGCCGCCACCGTCGGCGGTTTCCTCCGGTAAACCGCCCCTGTCGGCGAAGAGGAAGTGCGATGATAGCTCCCGATTTGGTTGCAAGATCAATTCCAAGGAGTGTCACTGCACGAAGCGAAGGAAATCGGGAGTGAAAAAGACAGTACGAGTTCCGGCGATCAGTTCTAAGATCGCCGAGATACCTTCCGACGAGTATTCTTGGAGAAAGTACGGCCAAAAGCCCATCAAAGGCTCGCCGTATCCGAGAGGTTATTACAGATGCAGCGCCGTCAAAGGATGTCCGGCGAGGAAAAAAGTTGAAAGAGCTCGCGACGATCCGGCGATGCTCGTCGTAACTTACGACGGAGATCACCGACACCCGCCGGCTACGAGGGCGGTGGCCGATGCCAGCGCGGGCTTCGTTTCCCAGACGTGTTGA | 834 | 54.56 | MAIDLAAFPATIDDQTAIQDAASASLQSMENLIRLLSKQQPTQKIADLDCSQVTDFTVSKFKRFISLINRTGHARFRRGSSSVSVLNSLDPLPSSSTIDFLKSPDSKAPTESTTTSSLMSTITGDGSVSNEKLGLSLFTPPPSAVSSGKPPLSAKRKCDDSSRFGCKINSKECHCTKRRKSGVKKTVRVPAISSKIAEIPSDEYSWRKYGQKPIKGSPYPRGYYRCSAVKGCPARKKVERARDDPAMLVVTYDGDHRHPPATRAVADASAGFVSQTC | 277 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1730598 | 1732013 | - | CmaCh11G003500.1 | Cma11g00350 | 302859 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00350 | 277 | SMART | WRKY_cls | 200 | 260 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g00350 | 277 | SUPERFAMILY | WRKY DNA-binding domain | 198 | 260 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g00350 | 277 | Gene3D | WRKY domain | 185 | 261 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g00350 | 277 | Pfam | Plant zinc cluster domain | 155 | 197 | IPR018872 | - | |
Cma11g00350 | 277 | MobiDBLite | consensus disorder prediction | 98 | 121 | - | - | |
Cma11g00350 | 277 | Pfam | WRKY DNA -binding domain | 202 | 259 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g00350 | 277 | ProSiteProfiles | WRKY domain profile. | 195 | 261 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g00350 | 277 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 11 | 89 | - | - | |
Cma11g00350 | 277 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 108 | 263 | - | - | |
Cma11g00350 | 277 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 108 | 263 | IPR044810 | GO:0003700 | |
Cma11g00350 | 277 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 11 | 89 | IPR044810 | GO:0003700 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00364 | Cma11g00350 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g00350 | Cma-Chr11:1730598 | Cma20g00968 | Cma-Chr20:4913335 | 1.26E-67 | dispersed | |
Cma10g00364 | Cma-Chr10:1677276 | Cma11g00350 | Cma-Chr11:1730598 | 1.44E-112 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35803 | PF03106 | WRKY | 9.70E-26 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00350 | - | - | bhj:120070667 | 382.104 |