Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00350 ATGGCCATCGACCTCGCAGCGTTTCCGGCCACCATTGACGACCAAACCGCCATCCAAGATGCCGCCTCCGCCAGTTTACAGAGCATGGAGAATCTAATCCGTCTCTTATCCAAACAACAACCCACTCAAAAAATCGCCGATCTCGATTGCTCTCAAGTCACCGATTTCACCGTCTCCAAATTCAAGCGATTCATTTCCCTCATCAACCGCACCGGCCACGCCCGGTTCCGTCGCGGTTCTTCCTCTGTTTCCGTTCTCAATTCTCTCGATCCACTTCCCAGTTCCTCCACTATTGATTTCCTTAAATCGCCCGATTCCAAGGCTCCGACTGAGTCCACTACGACCTCGTCTCTCATGTCCACGATCACCGGCGACGGAAGCGTTTCCAACGAAAAGCTTGGTCTGTCACTCTTCACGCCGCCACCGTCGGCGGTTTCCTCCGGTAAACCGCCCCTGTCGGCGAAGAGGAAGTGCGATGATAGCTCCCGATTTGGTTGCAAGATCAATTCCAAGGAGTGTCACTGCACGAAGCGAAGGAAATCGGGAGTGAAAAAGACAGTACGAGTTCCGGCGATCAGTTCTAAGATCGCCGAGATACCTTCCGACGAGTATTCTTGGAGAAAGTACGGCCAAAAGCCCATCAAAGGCTCGCCGTATCCGAGAGGTTATTACAGATGCAGCGCCGTCAAAGGATGTCCGGCGAGGAAAAAAGTTGAAAGAGCTCGCGACGATCCGGCGATGCTCGTCGTAACTTACGACGGAGATCACCGACACCCGCCGGCTACGAGGGCGGTGGCCGATGCCAGCGCGGGCTTCGTTTCCCAGACGTGTTGA 834 54.56 MAIDLAAFPATIDDQTAIQDAASASLQSMENLIRLLSKQQPTQKIADLDCSQVTDFTVSKFKRFISLINRTGHARFRRGSSSVSVLNSLDPLPSSSTIDFLKSPDSKAPTESTTTSSLMSTITGDGSVSNEKLGLSLFTPPPSAVSSGKPPLSAKRKCDDSSRFGCKINSKECHCTKRRKSGVKKTVRVPAISSKIAEIPSDEYSWRKYGQKPIKGSPYPRGYYRCSAVKGCPARKKVERARDDPAMLVVTYDGDHRHPPATRAVADASAGFVSQTC 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1730598 1732013 - CmaCh11G003500.1 Cma11g00350 302859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00350 277 SMART WRKY_cls 200 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g00350 277 SUPERFAMILY WRKY DNA-binding domain 198 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma11g00350 277 Gene3D WRKY domain 185 261 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma11g00350 277 Pfam Plant zinc cluster domain 155 197 IPR018872 -
Cma11g00350 277 MobiDBLite consensus disorder prediction 98 121 - -
Cma11g00350 277 Pfam WRKY DNA -binding domain 202 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g00350 277 ProSiteProfiles WRKY domain profile. 195 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g00350 277 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 11 89 - -
Cma11g00350 277 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 108 263 - -
Cma11g00350 277 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 108 263 IPR044810 GO:0003700
Cma11g00350 277 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 11 89 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00364 Cma11g00350 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00350 Cma-Chr11:1730598 Cma20g00968 Cma-Chr20:4913335 1.26E-67 dispersed
Cma10g00364 Cma-Chr10:1677276 Cma11g00350 Cma-Chr11:1730598 1.44E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35803 PF03106 WRKY 9.70E-26 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00350 - - bhj:120070667 382.104