Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00359 | ATGAATTACTTGGAGAATGGCGTGTTCATGCCCGAAGATCTCGGCAGTTGGGGACTTGACGATCTGGTTCCCAGCTACTATGATTCCAGTTCGCCGGAGGGAGTTCTATCGCCATCGGCGGCTTCGAAGAACATAGTATCGGAGAGGAATAGGAGGAGGAAGCTTAATGATAGGCTTTTTGCACTTCGAGCGGTGGTTCCAAATATTAGTAAGATGGATAAGGCTTCCATTATTAAAGATGCAATCGATCACATTCAGAAGTTGCGTGAACAAGAGAGGAGGATTGAAACTGAAATTTATGAGCTCGAAGCGGGAAAGTCAAAGAAGAAGATAACGCGGTATGAGTTTGAGCAGGAGGTGCCATTGTTGCATACACCAAAGAGGACTAAAACAGAGCAGTTCAGCTATTACGATTCTTCTGCTACAAGATTTTCTCCCATTGAAGTGCTGGGTTTAAGTGTAACGTATATGGGGGAAAGAACAATCGTGGTGAGCTTAACATGTTGCAAAAGAGCAGATTCAATGGTTAAACTATGTAAAGTTTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATCACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTGTTCATCGAGGCTGGACAAGAGGAGAGAGATCTCTTGAAGATTAAAATAGAAACAGCCCTTGCAGGTCTTAATGATTCCCAAAGCCCCGTGAGTATCTAA | 714 | 43.28 | MNYLENGVFMPEDLGSWGLDDLVPSYYDSSSPEGVLSPSAASKNIVSERNRRRKLNDRLFALRAVVPNISKMDKASIIKDAIDHIQKLREQERRIETEIYELEAGKSKKKITRYEFEQEVPLLHTPKRTKTEQFSYYDSSATRFSPIEVLGLSVTYMGERTIVVSLTCCKRADSMVKLCKVFESLKLKIITANITAVSGRLLKTVFIEAGQEERDLLKIKIETALAGLNDSQSPVSI | 237 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1786261 | 1790042 | + | CmaCh11G003590.1 | Cma11g00359 | 302868 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00359 | 237 | Pfam | Helix-loop-helix DNA-binding domain | 46 | 88 | IPR011598 | GO:0046983 | |
Cma11g00359 | 237 | Coils | Coil | 78 | 105 | - | - | |
Cma11g00359 | 237 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 40 | 103 | IPR036638 | GO:0046983 | |
Cma11g00359 | 237 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 8 | 231 | - | - | |
Cma11g00359 | 237 | SMART | finulus | 45 | 94 | IPR011598 | GO:0046983 | |
Cma11g00359 | 237 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 39 | 88 | IPR011598 | GO:0046983 | |
Cma11g00359 | 237 | PANTHER | TRANSCRIPTION FACTOR BHLH35 | 8 | 231 | - | - | |
Cma11g00359 | 237 | Gene3D | - | 37 | 104 | IPR036638 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g00359 | Cma12g00915 | CCT | |
Cma05g00719 | Cma11g00359 | CCT | |
Cma10g00372 | Cma11g00359 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g00359 | Cma-Chr11:1786261 | Cma20g00525 | Cma-Chr20:2531997 | 2.74E-20 | dispersed | |
Cma10g00372 | Cma-Chr10:1713555 | Cma11g00359 | Cma-Chr11:1786261 | 3.27E-124 | wgd | |
Cma11g00359 | Cma-Chr11:1786261 | Cma12g00915 | Cma-Chr12:7027138 | 9.77E-63 | wgd | |
Cma11g00359 | Cma-Chr11:1786261 | Cma05g00719 | Cma-Chr5:3861355 | 1.48E-70 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35804 | PF00010 | HLH | 2.90E-10 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00359 | - | - | cmo:103494233 | 327.405 |