Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00359 ATGAATTACTTGGAGAATGGCGTGTTCATGCCCGAAGATCTCGGCAGTTGGGGACTTGACGATCTGGTTCCCAGCTACTATGATTCCAGTTCGCCGGAGGGAGTTCTATCGCCATCGGCGGCTTCGAAGAACATAGTATCGGAGAGGAATAGGAGGAGGAAGCTTAATGATAGGCTTTTTGCACTTCGAGCGGTGGTTCCAAATATTAGTAAGATGGATAAGGCTTCCATTATTAAAGATGCAATCGATCACATTCAGAAGTTGCGTGAACAAGAGAGGAGGATTGAAACTGAAATTTATGAGCTCGAAGCGGGAAAGTCAAAGAAGAAGATAACGCGGTATGAGTTTGAGCAGGAGGTGCCATTGTTGCATACACCAAAGAGGACTAAAACAGAGCAGTTCAGCTATTACGATTCTTCTGCTACAAGATTTTCTCCCATTGAAGTGCTGGGTTTAAGTGTAACGTATATGGGGGAAAGAACAATCGTGGTGAGCTTAACATGTTGCAAAAGAGCAGATTCAATGGTTAAACTATGTAAAGTTTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATCACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTGTTCATCGAGGCTGGACAAGAGGAGAGAGATCTCTTGAAGATTAAAATAGAAACAGCCCTTGCAGGTCTTAATGATTCCCAAAGCCCCGTGAGTATCTAA 714 43.28 MNYLENGVFMPEDLGSWGLDDLVPSYYDSSSPEGVLSPSAASKNIVSERNRRRKLNDRLFALRAVVPNISKMDKASIIKDAIDHIQKLREQERRIETEIYELEAGKSKKKITRYEFEQEVPLLHTPKRTKTEQFSYYDSSATRFSPIEVLGLSVTYMGERTIVVSLTCCKRADSMVKLCKVFESLKLKIITANITAVSGRLLKTVFIEAGQEERDLLKIKIETALAGLNDSQSPVSI 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1786261 1790042 + CmaCh11G003590.1 Cma11g00359 302868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00359 237 Pfam Helix-loop-helix DNA-binding domain 46 88 IPR011598 GO:0046983
Cma11g00359 237 Coils Coil 78 105 - -
Cma11g00359 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 40 103 IPR036638 GO:0046983
Cma11g00359 237 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 8 231 - -
Cma11g00359 237 SMART finulus 45 94 IPR011598 GO:0046983
Cma11g00359 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983
Cma11g00359 237 PANTHER TRANSCRIPTION FACTOR BHLH35 8 231 - -
Cma11g00359 237 Gene3D - 37 104 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00359 Cma12g00915 CCT
Cma05g00719 Cma11g00359 CCT
Cma10g00372 Cma11g00359 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00359 Cma-Chr11:1786261 Cma20g00525 Cma-Chr20:2531997 2.74E-20 dispersed
Cma10g00372 Cma-Chr10:1713555 Cma11g00359 Cma-Chr11:1786261 3.27E-124 wgd
Cma11g00359 Cma-Chr11:1786261 Cma12g00915 Cma-Chr12:7027138 9.77E-63 wgd
Cma11g00359 Cma-Chr11:1786261 Cma05g00719 Cma-Chr5:3861355 1.48E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35804 PF00010 HLH 2.90E-10 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00359 - - cmo:103494233 327.405