Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00364 ATGAGAGGTACTGGAAGAAGATTGACCCAGAAGGAATCTGGCAAGTGTTCTCACTCCAAGATGGAAACTGGATCAGAGTTGATATTACCTCTGAAGTTGAAAAGGTGTAGCAAAATATCCCATTCCAAACAGAAAAAATCAAGAACGAAATCGCATGCACAGGAAATTGGTTCAACATTGAAGAGGAGACCATTTCCTAAATCCTTGAGCAAGGGGAATAAAAATGTGACAATTAGACAACTGGCTGGGAAAAAATTTCTGCTAAAGAAACTTAATTCAAAATATACCAAGGACTTACTTTTGTCTAAGCTTCAAGGTGGTAAATCCCTGCCGTCACCTAGTACGGAAGGGAATGCAGAGAAGGTTGAGCCAGTGACCAAGATAAACCAACAAAGGAAAAGGAGGAAGAACAAAGGAAAAAGGGAAAAAGTGGAGTTAGATGAAGCTTCTCGCCTACAGAGAAGAACAAGATACCTTATTATTAAGATTAAGCTTGAGCAGAACCTTATCGATGCCTACTCTGGAGAAGGTTGGAAAGGCCAGAGCCGAGAAAAAATTAGGCCAGAAAAGGAACTCCAGAGAGCCATGGAGCAGATATTGCAGTGCAAACTTGGAATCCGTGATGCTATTCGCCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGATTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCAAAATGTAAGTTGCGTGAAGCTTTTCCAGATAATGACATTATACTTTGCGATGGGACATGCAACTGTGCTTTTCATCAAAAATGTCTGGATCCACCATTAGACACGGAAAATATTCCTCCAGGAGACCAGGGTTGGTTTTGCAAATTTTGTGAGTGCAAGATGGAAATATTGGAGGGAATGAATGCACATCTTGGTACCCGGTTCTCAATGAACGTTAGTTGGGAGGACATTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTAGAAATGCATCGCTTAATCATGAGGAAGATTGGCCCTCGGATGATTCCGCAGATGATGACTATGATCCAGATAAGAAGGAGATTGGCTATGACAACCCAAGTGGGGAAGAAAATGACAAGGATGTTTTTGAGGAGTCGAGTAGTTCAACCAGCTTGAGTTGGTCTTTAGATGGCGAGGATTTAACTGATAGAGATAGTATTGGATGTGAAGATCACTTTGGTGCTAGCAGCAGCATAGTTTCTGATGGCTCCAATGAAGAGGGTATAACAGGTGGCCGTCGGCAACGGCAGGCTGTTGATTATAAGAAGTTATATGTCGAAATGTTTGGAAAGGATTCTACAGCACATGAACAAGTTAGTGAAGATGAAGACTGGGGACCTGCAAAAAGAAGACGGAGGGAAAAGGAATGTGATGCTGCAAGTACTCTTATGTCTCTTTGTGAAAGTGAAAAAAAGAGTAAGAAAATTGACGTGGAAGCTGAGAAAAGACCTCTCAATTCGCAAAGTAGATCATTTTTCAGAATTCCTCTTTATGCAGTGGAGAAACTTCGCCAAGTGTTTGCTGAAAATGAACTTCCCTCTAGAGATGTCAAGGAGAACCTTTCAATAGAGTTGGGTCTTGATGCTGAGAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAGAACCAGAAAGGCAGAGGGAGCAACACAATCCCATAGTCCCAATAAGACTCTCAACGAGCCCAGATTGGCAGATTCAAAGGAAATGTCTGCGTGTCCTCCTTCATCAGAGGACGCACCAATAAAAGAACTGCAGCTTAAATCGCGCAATAGTCACTACAAGAAAAAGCAGCACAGGAAATCGTCTCTTGTGTCTTCCAACAATAACAAGGATGCTCTTGATTCAGGTGATGATATAAGCTTGAAGAATCTCCTAAAGAATAGGAAAGCAAAGGTAAAGAAGAGGGTTAAATTCGTAGCTAGAGGTGGAGATCGAGGTCAAGAAGCAGAAGTGGAGATGGAGAGACTGTGTAAAATTAAGGGTAGATTAGAGATAATGAAGCAGAAATTACTTAGACTATCAAATAAGAAAGAAGATGGGGTTTTAGATAGGTCACACATGTTTGAACAGTCTATTGTATATGTTCCTGTGGCAGTGTTAAAGGAGAAGGTTTGA 2151 41.42 MRGTGRRLTQKESGKCSHSKMETGSELILPLKLKRCSKISHSKQKKSRTKSHAQEIGSTLKRRPFPKSLSKGNKNVTIRQLAGKKFLLKKLNSKYTKDLLLSKLQGGKSLPSPSTEGNAEKVEPVTKINQQRKRRKNKGKREKVELDEASRLQRRTRYLIIKIKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAMEQILQCKLGIRDAIRQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTENIPPGDQGWFCKFCECKMEILEGMNAHLGTRFSMNVSWEDIFKEEAAFPDGRNASLNHEEDWPSDDSADDDYDPDKKEIGYDNPSGEENDKDVFEESSSSTSLSWSLDGEDLTDRDSIGCEDHFGASSSIVSDGSNEEGITGGRRQRQAVDYKKLYVEMFGKDSTAHEQVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSKKIDVEAEKRPLNSQSRSFFRIPLYAVEKLRQVFAENELPSRDVKENLSIELGLDAEKVSKWFKNARYSALRTRKAEGATQSHSPNKTLNEPRLADSKEMSACPPSSEDAPIKELQLKSRNSHYKKKQHRKSSLVSSNNNKDALDSGDDISLKNLLKNRKAKVKKRVKFVARGGDRGQEAEVEMERLCKIKGRLEIMKQKLLRLSNKKEDGVLDRSHMFEQSIVYVPVAVLKEKV 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1814018 1820789 - CmaCh11G003640.1 Cma11g00364 302873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00364 716 Pfam Homeodomain 507 549 IPR001356 GO:0003677
Cma11g00364 716 MobiDBLite consensus disorder prediction 441 461 - -
Cma11g00364 716 MobiDBLite consensus disorder prediction 329 424 - -
Cma11g00364 716 Gene3D - 502 567 - -
Cma11g00364 716 SUPERFAMILY Homeodomain-like 496 560 IPR009057 -
Cma11g00364 716 PANTHER POLYCOMB PROTEIN PCL 1 691 - -
Cma11g00364 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 288 IPR013083 -
Cma11g00364 716 MobiDBLite consensus disorder prediction 105 147 - -
Cma11g00364 716 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 1 691 - -
Cma11g00364 716 MobiDBLite consensus disorder prediction 555 624 - -
Cma11g00364 716 MobiDBLite consensus disorder prediction 405 419 - -
Cma11g00364 716 ProSiteProfiles Zinc finger PHD-type profile. 237 294 IPR019787 -
Cma11g00364 716 MobiDBLite consensus disorder prediction 350 372 - -
Cma11g00364 716 CDD homeodomain 502 555 IPR001356 GO:0003677
Cma11g00364 716 SMART HOX_1 496 558 IPR001356 GO:0003677
Cma11g00364 716 Pfam PHD-finger 239 294 IPR019787 -
Cma11g00364 716 SMART PHD_3 239 292 IPR001965 -
Cma11g00364 716 MobiDBLite consensus disorder prediction 556 572 - -
Cma11g00364 716 ProSiteProfiles 'Homeobox' domain profile. 494 554 IPR001356 GO:0003677
Cma11g00364 716 MobiDBLite consensus disorder prediction 1 24 - -
Cma11g00364 716 MobiDBLite consensus disorder prediction 1 19 - -
Cma11g00364 716 ProSitePatterns Zinc finger PHD-type signature. 240 291 IPR019786 -
Cma11g00364 716 CDD PHD_PRHA_like 239 291 IPR045876 -
Cma11g00364 716 MobiDBLite consensus disorder prediction 38 72 - -
Cma11g00364 716 SUPERFAMILY FYVE/PHD zinc finger 230 297 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00465 Cma-Chr4:2372471 Cma11g00364 Cma-Chr11:1814018 1.73E-11 dispersed
Cma11g00364 Cma-Chr11:1814018 Cma16g00335 Cma-Chr16:1574960 2.52E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35806 PF00628 PHD 9.60E-10 CL0390 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00364 - - cmos:111441056 1323.15