Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00387 ATGGAAGCCAAAAATGAGTGTCTCTCGATTAAACCTCGCTTCGACGCCACAGCTGCCTCATACTCTTTTATTTTCCCCTCTTTCTCTCTCGACTCCGCCAATCTCCTCTTCAAATTTCCTCTTCCGGACCTCAATCCATGGATTCCTTCATCCGCCTTCACTTTCCCGCTATTTTCTGGTCTGTTTTCGTTCGCTTTTGGTGGTAATGTGGTGGAATCACTGTCTGCTTTCTTTTCAATATGCCTTCCGATTCTTCCTCTGAAGGAAGCTTGCCATGTCCAATTACCCGAGTATCTTCGCTCATTAGAAGGTTCGTTTGGAGCTCCTCTTGATCCATCAAAATGCAGTAAGACGAGCATGGAGGAGAAAAGAAATTTAGTCTATGAAATATCAGATCAGCCACATGCTTCTGAACTGCTTCAGTCCTGGAGTCGTCAAGAGATTCTAGAGATCCTGTGTGCAGAGATGGGAAAAGAGAGAAAATATACCGGATTAACAAAATTGAAAATAGTCGAGAACCTTCTGAAGATTGTTAGTGAAAAGAAATCAGGGTCAACTGAGAATGTAGCAGACCTTGACCATCAATCTTCTTCACCATATCTTTCTCCAAATATTACCAAAAGGCAAAGAAAAATTGATCAGCCATCACGGCTACCAGTTCCGGAAAACAATATTCCTATCAGTAGCATTAGGAGTGACTCAAATATTGCAGTTTACTGCAGAAATTCAGCATGCAAGGCTACCTTAAATGAAGAGGATAAATTTTGCAAGAGGTGTTCATGCTGCATCTGCTATCAATATGATGATAATAAGGATCCTAGTCTATGGTTAAGTTGCAGCTCTGACCCACCATTTCAAGGCACTTCATGTGGTTTGTCATGCCATCTTGAATGTGCATTGAAGCATGAAAAATCTGGAATTTCTAAAGGACAGCAGGTTGGAGTTGAAGGGACTTTCTATTGTCTATCATGTGGAAAAGTCAACGACTTGCTTGGGAGTTGGAGAAAACAATTGATGAAGGCAAAGGAAACCCGAAGGGTGGATATACTGTGTTACCGCATCTCTTTAGCCAAAAAGATTTTGAGTGAAGGTGAAAAGTATCAAGATGTTTGTCGGATCGTGGATGAGGCTGTGAAGAAACTTGAAGCTGAAGTGGGTCCTTTGACTGGTGTACCGGTTGGTACGGGCAGAGGCATAGTGAACAGGCTTTCTTCAGGACCAGAGGTTCAGAAACTCTGCACGTTAGCCATTGATACACTGGACTCCTTGCTCTCCAAGAAGATCTTGCATCAATCGCCCATTTCCATTATACAAGACACAAATTTGGTAGCTACAAACTTATTAAGGTTCGAAGATGTTGATGCAACATACCTTACAGTGGTTATGGGTACCGAAGATGTTTCTTCTGGAAAAACTGTTGGTTACAGGCTATGGCATCGAAAGGCATGTGATATAGATTACCCTATAGAGCCAACTTGCATCTTGTCTCAACCCAATTTGAGGTTTGTCGTCCGAGGACTGACCCCATCTTCAGAATATTATTTCAAAGCCATTTCCTTTAATGGGACAGGAGATATGGGGATGTGTGAAGTTCAGATCTCAACTGCTAGTGCTCGGGAGGATCACCCAGGATGCTTGGTGATTGAAAGAAGTCAGAGTTCGGTTACCAACGTTAGTGAGCTCTCTAATCCTTCTTCAGTAGAAGATGAAACAAACAATGTAATGCCTTGTAGCGATCAGACTGATAGTCAAACAGAGAACTATCTTTCTTATTGCAAAGATCCTAACAAGATCATCACTGCTAACCTGTCTAAAGATGCAATAAACTGCACTGATGTCGGTGGAGGAGAAACAGCAAATGATTCTGTTTATTTGTTGGATGAGAAACATGTTACAAAGAAAAGTGGCATGCTGCCTGATCCTAATGTTTTAAAACATGAAGACAAACATTCCTCTGAGATTCATATCATTGAAGATACAAGCGTAAACAACGGGTCAAATTCTGCCGTCGTTCAAGAAGGAACTAAATGCCCACCATTTGTTAACAGCTCTGGGGCTGGATTGCCAGCTACTCCTTGCAAGATGGAAATACTTACGGATGTTCTTGGAAGGAGTGGACGATCGAAGTCCAGTGCCACGGATCGAGAAATCGGGTCTGAGGGAGACAAACTCCGACGTGGCAGCAAATCTAAGAAGAGAAGTGCAGAGATTCGAGATGCTGATTGTACGGCAAATGGTATTTCAGATAAGGATTTTGAGTATTATGTAAAATTGATTAGATGGCTAGAATGCGAGGGACACATAGATAAGAACTTCAGACAAAAATTCTTAACCTGGTACAGCTTGAGTGCCACATCCCAGGAAGTTAGGATTGTGAAGGCCTTTGTTGATAACTTCATTGAAGATCCATCAGCTCTTGCAGAGCAACTTGTGGACACCTTTTCAGAATGCATTTCAAGCAAGAAAACATGTGCTGTGCCTGCTGGATTCTGCATGAAGCTTTGGCATTGA 2511 42.17 MEAKNECLSIKPRFDATAASYSFIFPSFSLDSANLLFKFPLPDLNPWIPSSAFTFPLFSGLFSFAFGGNVVESLSAFFSICLPILPLKEACHVQLPEYLRSLEGSFGAPLDPSKCSKTSMEEKRNLVYEISDQPHASELLQSWSRQEILEILCAEMGKERKYTGLTKLKIVENLLKIVSEKKSGSTENVADLDHQSSSPYLSPNITKRQRKIDQPSRLPVPENNIPISSIRSDSNIAVYCRNSACKATLNEEDKFCKRCSCCICYQYDDNKDPSLWLSCSSDPPFQGTSCGLSCHLECALKHEKSGISKGQQVGVEGTFYCLSCGKVNDLLGSWRKQLMKAKETRRVDILCYRISLAKKILSEGEKYQDVCRIVDEAVKKLEAEVGPLTGVPVGTGRGIVNRLSSGPEVQKLCTLAIDTLDSLLSKKILHQSPISIIQDTNLVATNLLRFEDVDATYLTVVMGTEDVSSGKTVGYRLWHRKACDIDYPIEPTCILSQPNLRFVVRGLTPSSEYYFKAISFNGTGDMGMCEVQISTASAREDHPGCLVIERSQSSVTNVSELSNPSSVEDETNNVMPCSDQTDSQTENYLSYCKDPNKIITANLSKDAINCTDVGGGETANDSVYLLDEKHVTKKSGMLPDPNVLKHEDKHSSEIHIIEDTSVNNGSNSAVVQEGTKCPPFVNSSGAGLPATPCKMEILTDVLGRSGRSKSSATDREIGSEGDKLRRGSKSKKRSAEIRDADCTANGISDKDFEYYVKLIRWLECEGHIDKNFRQKFLTWYSLSATSQEVRIVKAFVDNFIEDPSALAEQLVDTFSECISSKKTCAVPAGFCMKLWH 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1918549 1924044 - CmaCh11G003870.1 Cma11g00387 302896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00387 836 PANTHER VIN3-LIKE PROTEIN 2-RELATED 108 836 IPR044514 GO:0010048|GO:0040029
Cma11g00387 836 SUPERFAMILY Fibronectin type III 449 524 IPR036116 GO:0005515
Cma11g00387 836 MobiDBLite consensus disorder prediction 704 732 - -
Cma11g00387 836 CDD PHD_VIN3_plant 260 324 - -
Cma11g00387 836 Pfam PHD - plant homeodomain finger protein 240 358 IPR032881 -
Cma11g00387 836 MobiDBLite consensus disorder prediction 561 580 - -
Cma11g00387 836 CDD FN3 448 525 IPR003961 GO:0005515
Cma11g00387 836 ProSiteProfiles Fibronectin type-III domain profile. 443 541 IPR003961 GO:0005515
Cma11g00387 836 MobiDBLite consensus disorder prediction 709 732 - -
Cma11g00387 836 PANTHER VIN3-LIKE PROTEIN 2-RELATED 108 836 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00387 - - - csv:101220456 1187.94
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00392 Cma11g00387 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00537 Cma-Chr5:2614050 Cma11g00387 Cma-Chr11:1918549 2.46E-17 dispersed
Cma10g00599 Cma-Chr10:2767792 Cma11g00387 Cma-Chr11:1918549 1.23E-25 dispersed
Cma11g00387 Cma-Chr11:1918549 Cma12g00206 Cma-Chr12:970064 3.75E-17 dispersed
Cma10g00392 Cma-Chr10:1816786 Cma11g00387 Cma-Chr11:1918549 1.74E-81 wgd
Cma11g00387 Cma-Chr11:1918549 Cma05g00690 Cma-Chr5:3595253 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g996 Blo01g00674 . Bda01g01916 . . Bpe02g02083 . . Cmo10g00421 Cmo11g00383 . . Car05g00633 . . Cpe04g01308 Cpe18g00625 Bhi02g00750 Tan09g1695 . . Hepe09g0475 . . Cla11g01180 Cam11g1238 Cec11g1250 Cco11g1245 Clacu11g1397 Cmu11g1222 Cre11g1642 Cone2ag0714 Cone16ag0292 . . Lsi06g01184 Csa02g00638 Chy05g00899 Cme02g01578 . . . . . Bpe13g01070 Bma01g00377 Bma06g01054 . . . Cma10g00392 Cma11g00387 Car10g00371 Car11g00358 Cpe11g00638 . Bhi06g01254 . . . Hepe08g2123 . . Cla06g01336 Cam06g1487 Cec06g1544 Cco06g1539 Clacu06g1445 Cmu06g1407 Cre06g2216 Lsi11g00762 Csa01g02159 Chy02g02233 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma11g00387 CST 101 573 PHD Gene Family AT4G30200 53.3 7.1e-136 481.9
Cma05g00690 . 4 468 PHD Gene Family AT4G30200 53.6 2.6e-130 463.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002200 1 4 1 1 1 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 4 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00387 Cma_Chr11 FPKM 6.902805 8.007959 9.842261 9.568515 17.263018 17.249876 19.440374 5.629765 4.186506 4.775949