Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00387 ATGGAAGCCAAAAATGAGTGTCTCTCGATTAAACCTCGCTTCGACGCCACAGCTGCCTCATACTCTTTTATTTTCCCCTCTTTCTCTCTCGACTCCGCCAATCTCCTCTTCAAATTTCCTCTTCCGGACCTCAATCCATGGATTCCTTCATCCGCCTTCACTTTCCCGCTATTTTCTGGTCTGTTTTCGTTCGCTTTTGGTGGTAATGTGGTGGAATCACTGTCTGCTTTCTTTTCAATATGCCTTCCGATTCTTCCTCTGAAGGAAGCTTGCCATGTCCAATTACCCGAGTATCTTCGCTCATTAGAAGGTTCGTTTGGAGCTCCTCTTGATCCATCAAAATGCAGTAAGACGAGCATGGAGGAGAAAAGAAATTTAGTCTATGAAATATCAGATCAGCCACATGCTTCTGAACTGCTTCAGTCCTGGAGTCGTCAAGAGATTCTAGAGATCCTGTGTGCAGAGATGGGAAAAGAGAGAAAATATACCGGATTAACAAAATTGAAAATAGTCGAGAACCTTCTGAAGATTGTTAGTGAAAAGAAATCAGGGTCAACTGAGAATGTAGCAGACCTTGACCATCAATCTTCTTCACCATATCTTTCTCCAAATATTACCAAAAGGCAAAGAAAAATTGATCAGCCATCACGGCTACCAGTTCCGGAAAACAATATTCCTATCAGTAGCATTAGGAGTGACTCAAATATTGCAGTTTACTGCAGAAATTCAGCATGCAAGGCTACCTTAAATGAAGAGGATAAATTTTGCAAGAGGTGTTCATGCTGCATCTGCTATCAATATGATGATAATAAGGATCCTAGTCTATGGTTAAGTTGCAGCTCTGACCCACCATTTCAAGGCACTTCATGTGGTTTGTCATGCCATCTTGAATGTGCATTGAAGCATGAAAAATCTGGAATTTCTAAAGGACAGCAGGTTGGAGTTGAAGGGACTTTCTATTGTCTATCATGTGGAAAAGTCAACGACTTGCTTGGGAGTTGGAGAAAACAATTGATGAAGGCAAAGGAAACCCGAAGGGTGGATATACTGTGTTACCGCATCTCTTTAGCCAAAAAGATTTTGAGTGAAGGTGAAAAGTATCAAGATGTTTGTCGGATCGTGGATGAGGCTGTGAAGAAACTTGAAGCTGAAGTGGGTCCTTTGACTGGTGTACCGGTTGGTACGGGCAGAGGCATAGTGAACAGGCTTTCTTCAGGACCAGAGGTTCAGAAACTCTGCACGTTAGCCATTGATACACTGGACTCCTTGCTCTCCAAGAAGATCTTGCATCAATCGCCCATTTCCATTATACAAGACACAAATTTGGTAGCTACAAACTTATTAAGGTTCGAAGATGTTGATGCAACATACCTTACAGTGGTTATGGGTACCGAAGATGTTTCTTCTGGAAAAACTGTTGGTTACAGGCTATGGCATCGAAAGGCATGTGATATAGATTACCCTATAGAGCCAACTTGCATCTTGTCTCAACCCAATTTGAGGTTTGTCGTCCGAGGACTGACCCCATCTTCAGAATATTATTTCAAAGCCATTTCCTTTAATGGGACAGGAGATATGGGGATGTGTGAAGTTCAGATCTCAACTGCTAGTGCTCGGGAGGATCACCCAGGATGCTTGGTGATTGAAAGAAGTCAGAGTTCGGTTACCAACGTTAGTGAGCTCTCTAATCCTTCTTCAGTAGAAGATGAAACAAACAATGTAATGCCTTGTAGCGATCAGACTGATAGTCAAACAGAGAACTATCTTTCTTATTGCAAAGATCCTAACAAGATCATCACTGCTAACCTGTCTAAAGATGCAATAAACTGCACTGATGTCGGTGGAGGAGAAACAGCAAATGATTCTGTTTATTTGTTGGATGAGAAACATGTTACAAAGAAAAGTGGCATGCTGCCTGATCCTAATGTTTTAAAACATGAAGACAAACATTCCTCTGAGATTCATATCATTGAAGATACAAGCGTAAACAACGGGTCAAATTCTGCCGTCGTTCAAGAAGGAACTAAATGCCCACCATTTGTTAACAGCTCTGGGGCTGGATTGCCAGCTACTCCTTGCAAGATGGAAATACTTACGGATGTTCTTGGAAGGAGTGGACGATCGAAGTCCAGTGCCACGGATCGAGAAATCGGGTCTGAGGGAGACAAACTCCGACGTGGCAGCAAATCTAAGAAGAGAAGTGCAGAGATTCGAGATGCTGATTGTACGGCAAATGGTATTTCAGATAAGGATTTTGAGTATTATGTAAAATTGATTAGATGGCTAGAATGCGAGGGACACATAGATAAGAACTTCAGACAAAAATTCTTAACCTGGTACAGCTTGAGTGCCACATCCCAGGAAGTTAGGATTGTGAAGGCCTTTGTTGATAACTTCATTGAAGATCCATCAGCTCTTGCAGAGCAACTTGTGGACACCTTTTCAGAATGCATTTCAAGCAAGAAAACATGTGCTGTGCCTGCTGGATTCTGCATGAAGCTTTGGCATTGA 2511 42.17 MEAKNECLSIKPRFDATAASYSFIFPSFSLDSANLLFKFPLPDLNPWIPSSAFTFPLFSGLFSFAFGGNVVESLSAFFSICLPILPLKEACHVQLPEYLRSLEGSFGAPLDPSKCSKTSMEEKRNLVYEISDQPHASELLQSWSRQEILEILCAEMGKERKYTGLTKLKIVENLLKIVSEKKSGSTENVADLDHQSSSPYLSPNITKRQRKIDQPSRLPVPENNIPISSIRSDSNIAVYCRNSACKATLNEEDKFCKRCSCCICYQYDDNKDPSLWLSCSSDPPFQGTSCGLSCHLECALKHEKSGISKGQQVGVEGTFYCLSCGKVNDLLGSWRKQLMKAKETRRVDILCYRISLAKKILSEGEKYQDVCRIVDEAVKKLEAEVGPLTGVPVGTGRGIVNRLSSGPEVQKLCTLAIDTLDSLLSKKILHQSPISIIQDTNLVATNLLRFEDVDATYLTVVMGTEDVSSGKTVGYRLWHRKACDIDYPIEPTCILSQPNLRFVVRGLTPSSEYYFKAISFNGTGDMGMCEVQISTASAREDHPGCLVIERSQSSVTNVSELSNPSSVEDETNNVMPCSDQTDSQTENYLSYCKDPNKIITANLSKDAINCTDVGGGETANDSVYLLDEKHVTKKSGMLPDPNVLKHEDKHSSEIHIIEDTSVNNGSNSAVVQEGTKCPPFVNSSGAGLPATPCKMEILTDVLGRSGRSKSSATDREIGSEGDKLRRGSKSKKRSAEIRDADCTANGISDKDFEYYVKLIRWLECEGHIDKNFRQKFLTWYSLSATSQEVRIVKAFVDNFIEDPSALAEQLVDTFSECISSKKTCAVPAGFCMKLWH 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1918549 1924044 - CmaCh11G003870.1 Cma11g00387 302896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00387 836 PANTHER VIN3-LIKE PROTEIN 2-RELATED 108 836 IPR044514 GO:0010048|GO:0040029
Cma11g00387 836 SUPERFAMILY Fibronectin type III 449 524 IPR036116 GO:0005515
Cma11g00387 836 MobiDBLite consensus disorder prediction 704 732 - -
Cma11g00387 836 CDD PHD_VIN3_plant 260 324 - -
Cma11g00387 836 Pfam PHD - plant homeodomain finger protein 240 358 IPR032881 -
Cma11g00387 836 MobiDBLite consensus disorder prediction 561 580 - -
Cma11g00387 836 CDD FN3 448 525 IPR003961 GO:0005515
Cma11g00387 836 ProSiteProfiles Fibronectin type-III domain profile. 443 541 IPR003961 GO:0005515
Cma11g00387 836 MobiDBLite consensus disorder prediction 709 732 - -
Cma11g00387 836 PANTHER VIN3-LIKE PROTEIN 2-RELATED 108 836 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00392 Cma11g00387 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00537 Cma-Chr5:2614050 Cma11g00387 Cma-Chr11:1918549 2.46E-17 dispersed
Cma10g00599 Cma-Chr10:2767792 Cma11g00387 Cma-Chr11:1918549 1.23E-25 dispersed
Cma11g00387 Cma-Chr11:1918549 Cma12g00206 Cma-Chr12:970064 3.75E-17 dispersed
Cma10g00392 Cma-Chr10:1816786 Cma11g00387 Cma-Chr11:1918549 1.74E-81 wgd
Cma11g00387 Cma-Chr11:1918549 Cma05g00690 Cma-Chr5:3595253 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00387 - - csv:101220456 1187.94