Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00388 | ATGAACTCTTCTTCCTCTTCTAATTCTTCCTCGTCTTCCTCTTCTTCCTCCTCTTCAAATTGGCTTGCTTTTTCTCTCTCTAACAATCCCAACTCTCTCTCTCTATTCCACCACCCTAATCCTCCCGATCTCTCCATTTTCTCCCCCAAGCTCGAGGATTTTCTCCGGGGAGCTTCCACCCCTCCGCCGCTGCCGTCTCCCTACCAGTTTTCTCCCCATCAAACGCCCCTCACTTTCTGTGAAGAATCCGAGATTTGCGATTCTGATCTCAAAACCATAGCCGCTAGTTTCCTCCGTGGATCTCCCTCCCAGTTCCCCGAACAACACCTTCAGCAGCATCTCCACGCGCCGCCTCCCCACCCTCTGCCTGATACCCTAACCAATCCACCGCCGCCGCCTCCCAAGAAGTCCGTCGATACTTTCGGCCAACGTACCTCCATCTACCGCGGTGTTACAAGACACAGATGGACTGGTCGATATGAAGCTCATTTGTGGGATAACAGTTGCAGAAGAGAGGGTCAGAGTAGGAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAGGAAGAAAAAGCAGCTCGAGCTTATGATCTCGCTGCTCTCAAATACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGGATTACGAAAAAGACCTGGAGAATATGAAGAACATGACCAGACAAGAATTTGTCGCTTCATTAAGAAGGAAAAGCAGCGGTTTCTCTAGAGGAGCTTCTATTTACAGAGGTGTAACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGGAGGGTTGCTGGCAATAAAGATCTCTACCTTGGAACTTTCAGCACTCAGGAAGAAGCAGCGGAGGCGTATGATATTGCGGCCATCAAATTCCGAGGCCTAAACGCTGTCACCAACTTCGATATAAGTCGCTACGACGTCAAAAGCATTGCCAGCAGCAACCTTCCCATCGGAGGCATGTCGGCCACCAAATCCAAACCCACCACCGACTCCTCCGCCTCCGAAGACCGCGACGTGCACCATTCTCCCGTCTCCTCCACCGCGACTCTCCTCCCATCTCACCCCAACACCTCCACTCTAACCTTCGGAATGCCGCCCATCAAACAAGACCCATCCGACCAATACTGGTCCATGTTCGGCTACAACGTTCCCCCACCAACATCCTCATCCTCCTTCACAATGTTCCAACAACCTTCAAACACCGCATCCACAACGTTCCCCGCCGTCGCCGACCTACCTCCAACCGCCTCGCCGCCGCTCCCCGAAGGCGGCGCTTACGAGCAGCACCAACAATTTGCAGCCCCGATAGCTTTAAGTAGAGCAAGCCTGTTTCAAACGCCAATATTTGGAATAGAATGA | 1377 | 52.14 | MNSSSSSNSSSSSSSSSSSNWLAFSLSNNPNSLSLFHHPNPPDLSIFSPKLEDFLRGASTPPPLPSPYQFSPHQTPLTFCEESEICDSDLKTIAASFLRGSPSQFPEQHLQQHLHAPPPHPLPDTLTNPPPPPPKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSDYEKDLENMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSATKSKPTTDSSASEDRDVHHSPVSSTATLLPSHPNTSTLTFGMPPIKQDPSDQYWSMFGYNVPPPTSSSSFTMFQQPSNTASTTFPAVADLPPTASPPLPEGGAYEQHQQFAAPIALSRASLFQTPIFGIE | 458 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1927730 | 1930487 | - | CmaCh11G003880.1 | Cma11g00388 | 302897 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00388 | 458 | Pfam | AP2 domain | 249 | 299 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00388 | 458 | Pfam | AP2 domain | 147 | 205 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00388 | 458 | SUPERFAMILY | DNA-binding domain | 146 | 215 | IPR016177 | GO:0003677 | |
Cma11g00388 | 458 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 131 | 353 | - | - | |
Cma11g00388 | 458 | MobiDBLite | consensus disorder prediction | 116 | 137 | - | - | |
Cma11g00388 | 458 | CDD | AP2 | 248 | 309 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00388 | 458 | Gene3D | AP2/ERF domain | 147 | 215 | IPR036955 | GO:0003700|GO:0006355 | |
Cma11g00388 | 458 | Gene3D | AP2/ERF domain | 249 | 309 | IPR036955 | GO:0003700|GO:0006355 | |
Cma11g00388 | 458 | PRINTS | Ethylene responsive element binding protein signature | 148 | 159 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00388 | 458 | PRINTS | Ethylene responsive element binding protein signature | 289 | 309 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00388 | 458 | SUPERFAMILY | DNA-binding domain | 248 | 309 | IPR016177 | GO:0003677 | |
Cma11g00388 | 458 | ProSiteProfiles | AP2/ERF domain profile. | 249 | 307 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00388 | 458 | CDD | AP2 | 146 | 215 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00388 | 458 | MobiDBLite | consensus disorder prediction | 349 | 371 | - | - | |
Cma11g00388 | 458 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cma11g00388 | 458 | MobiDBLite | consensus disorder prediction | 322 | 372 | - | - | |
Cma11g00388 | 458 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM | 131 | 353 | - | - | |
Cma11g00388 | 458 | MobiDBLite | consensus disorder prediction | 103 | 140 | - | - | |
Cma11g00388 | 458 | ProSiteProfiles | AP2/ERF domain profile. | 147 | 213 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00388 | 458 | SMART | rav1_2 | 249 | 313 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00388 | 458 | SMART | rav1_2 | 147 | 219 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g00388 | Cma12g00994 | CCT | |
Cma11g00388 | Cma12g00994 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g00631 | Cma-Chr7:2740186 | Cma11g00388 | Cma-Chr11:1927730 | 1.20E-119 | dispersed | |
Cma09g00308 | Cma-Chr9:1272511 | Cma11g00388 | Cma-Chr11:1927730 | 4.10E-114 | dispersed | |
Cma11g00388 | Cma-Chr11:1927730 | Cma12g00994 | Cma-Chr12:7929517 | 1.38E-123 | dispersed | |
Cma11g00388 | Cma-Chr11:1927730 | Cma05g00792 | Cma-Chr5:5023853 | 3.31E-125 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35807 | PF00847 | AP2 | 3.30E-13 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00388 | K09285 | - | csv:101210453 | 555.829 |