Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00388 ATGAACTCTTCTTCCTCTTCTAATTCTTCCTCGTCTTCCTCTTCTTCCTCCTCTTCAAATTGGCTTGCTTTTTCTCTCTCTAACAATCCCAACTCTCTCTCTCTATTCCACCACCCTAATCCTCCCGATCTCTCCATTTTCTCCCCCAAGCTCGAGGATTTTCTCCGGGGAGCTTCCACCCCTCCGCCGCTGCCGTCTCCCTACCAGTTTTCTCCCCATCAAACGCCCCTCACTTTCTGTGAAGAATCCGAGATTTGCGATTCTGATCTCAAAACCATAGCCGCTAGTTTCCTCCGTGGATCTCCCTCCCAGTTCCCCGAACAACACCTTCAGCAGCATCTCCACGCGCCGCCTCCCCACCCTCTGCCTGATACCCTAACCAATCCACCGCCGCCGCCTCCCAAGAAGTCCGTCGATACTTTCGGCCAACGTACCTCCATCTACCGCGGTGTTACAAGACACAGATGGACTGGTCGATATGAAGCTCATTTGTGGGATAACAGTTGCAGAAGAGAGGGTCAGAGTAGGAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAGGAAGAAAAAGCAGCTCGAGCTTATGATCTCGCTGCTCTCAAATACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGGATTACGAAAAAGACCTGGAGAATATGAAGAACATGACCAGACAAGAATTTGTCGCTTCATTAAGAAGGAAAAGCAGCGGTTTCTCTAGAGGAGCTTCTATTTACAGAGGTGTAACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGGAGGGTTGCTGGCAATAAAGATCTCTACCTTGGAACTTTCAGCACTCAGGAAGAAGCAGCGGAGGCGTATGATATTGCGGCCATCAAATTCCGAGGCCTAAACGCTGTCACCAACTTCGATATAAGTCGCTACGACGTCAAAAGCATTGCCAGCAGCAACCTTCCCATCGGAGGCATGTCGGCCACCAAATCCAAACCCACCACCGACTCCTCCGCCTCCGAAGACCGCGACGTGCACCATTCTCCCGTCTCCTCCACCGCGACTCTCCTCCCATCTCACCCCAACACCTCCACTCTAACCTTCGGAATGCCGCCCATCAAACAAGACCCATCCGACCAATACTGGTCCATGTTCGGCTACAACGTTCCCCCACCAACATCCTCATCCTCCTTCACAATGTTCCAACAACCTTCAAACACCGCATCCACAACGTTCCCCGCCGTCGCCGACCTACCTCCAACCGCCTCGCCGCCGCTCCCCGAAGGCGGCGCTTACGAGCAGCACCAACAATTTGCAGCCCCGATAGCTTTAAGTAGAGCAAGCCTGTTTCAAACGCCAATATTTGGAATAGAATGA 1377 52.14 MNSSSSSNSSSSSSSSSSSNWLAFSLSNNPNSLSLFHHPNPPDLSIFSPKLEDFLRGASTPPPLPSPYQFSPHQTPLTFCEESEICDSDLKTIAASFLRGSPSQFPEQHLQQHLHAPPPHPLPDTLTNPPPPPPKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSDYEKDLENMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSATKSKPTTDSSASEDRDVHHSPVSSTATLLPSHPNTSTLTFGMPPIKQDPSDQYWSMFGYNVPPPTSSSSFTMFQQPSNTASTTFPAVADLPPTASPPLPEGGAYEQHQQFAAPIALSRASLFQTPIFGIE 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1927730 1930487 - CmaCh11G003880.1 Cma11g00388 302897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00388 458 Pfam AP2 domain 249 299 IPR001471 GO:0003700|GO:0006355
Cma11g00388 458 Pfam AP2 domain 147 205 IPR001471 GO:0003700|GO:0006355
Cma11g00388 458 SUPERFAMILY DNA-binding domain 146 215 IPR016177 GO:0003677
Cma11g00388 458 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 131 353 - -
Cma11g00388 458 MobiDBLite consensus disorder prediction 116 137 - -
Cma11g00388 458 CDD AP2 248 309 IPR001471 GO:0003700|GO:0006355
Cma11g00388 458 Gene3D AP2/ERF domain 147 215 IPR036955 GO:0003700|GO:0006355
Cma11g00388 458 Gene3D AP2/ERF domain 249 309 IPR036955 GO:0003700|GO:0006355
Cma11g00388 458 PRINTS Ethylene responsive element binding protein signature 148 159 IPR001471 GO:0003700|GO:0006355
Cma11g00388 458 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
Cma11g00388 458 SUPERFAMILY DNA-binding domain 248 309 IPR016177 GO:0003677
Cma11g00388 458 ProSiteProfiles AP2/ERF domain profile. 249 307 IPR001471 GO:0003700|GO:0006355
Cma11g00388 458 CDD AP2 146 215 IPR001471 GO:0003700|GO:0006355
Cma11g00388 458 MobiDBLite consensus disorder prediction 349 371 - -
Cma11g00388 458 MobiDBLite consensus disorder prediction 1 21 - -
Cma11g00388 458 MobiDBLite consensus disorder prediction 322 372 - -
Cma11g00388 458 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 131 353 - -
Cma11g00388 458 MobiDBLite consensus disorder prediction 103 140 - -
Cma11g00388 458 ProSiteProfiles AP2/ERF domain profile. 147 213 IPR001471 GO:0003700|GO:0006355
Cma11g00388 458 SMART rav1_2 249 313 IPR001471 GO:0003700|GO:0006355
Cma11g00388 458 SMART rav1_2 147 219 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00388 Cma12g00994 CCT
Cma11g00388 Cma12g00994 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00631 Cma-Chr7:2740186 Cma11g00388 Cma-Chr11:1927730 1.20E-119 dispersed
Cma09g00308 Cma-Chr9:1272511 Cma11g00388 Cma-Chr11:1927730 4.10E-114 dispersed
Cma11g00388 Cma-Chr11:1927730 Cma12g00994 Cma-Chr12:7929517 1.38E-123 dispersed
Cma11g00388 Cma-Chr11:1927730 Cma05g00792 Cma-Chr5:5023853 3.31E-125 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35807 PF00847 AP2 3.30E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00388 K09285 - csv:101210453 555.829