Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00400 ATGGCGGCCGCCGATCTCTCACCGGAATTCATATTCCGCTCAAAGCTCCCCGATATCACCATACCCGACCACCTCCCCTTGCACACTTACTGCTTTGAAAACATCTCCCAATTCAAACACCGTCCATGTCTAATCAACGGCGCTACCGGTGACACCTACACCTACGACGAAGTCCACGTAACATCCCGCCGTGTCGCCGCTGGCCTCCATAAGCTCGGCATCGGAAAAGGCGACGTCATTATGCTTCTCCTCCAAAACAGCCCACATTTCGTTTTAGCCTTCCTCGGTGCTTCTTATATTGGGGCGGTGGTCACCATGGCGAACCCGTTCTTCACGCTGCCGGAGATAGCAAAGCACGTCGCCTCCTCTGGCGCGAAGCTGATTATAACCCAAGCTGCCTTCGCCGAGAAAGTGAAAAGCTTGGTAGACAAAAACGGCGTGAGTATCAAGCTGATATTCATCGACCCTCCACCGGATGGAGAGGCTCATTTTTCGGTGTTGACTGATGATGTAAAAGAAGAGGATATGCCAGATGTGAAAATCAGTCCGAACGACGTCGTTGCATTGCCTTATTCTTCGGGGACTACAGGTCTTCCAAAAGGAGTAATGCTGACTCATCGAGGGTTGGTGACCAGCGTGGCACAACAAGTGGACGGTGAGAACCCGCACCTCTATATCCGAAGTGATGACGTGGTTTTATGCGTGCTTCCGTTGTTTCATATCTATTCATTGAACTCGATCATGATGTGCTCGTTGCGAGTGGGAGCGGCGATTTTGATCGTACAGAAATTCGACATTAATTACGTGGTGGAATTGGTGGGGAAATATAAGGTGACAATTGCGCCGTTGGTGCCGCCTATTGTATTGGCAATAGCGAAGAGTCCAGCGGTGGGGGGTTGGGAGATGTCGTCGATACGGATGGTGCTGTCGGGAGCGGCGCCGTTGGGGAAGGAGCTTGAAGATGCGTTTAGGGCTAAGCTTCCAGATGCGATACTGGGGCAGGGATATGGCATGACGGAGGCAGGGTCGGCACTGACGTTGTCGTTGGCATTTGCAAAGGAGAGGTTCCAGATAAAATCGGGAGCTTGTGGGACGTTGATGAGAAATTCAGAGATGAAAATTGTAAGCCCTCAAACTGGAGCTTCTCTTCCTAGGAATCAGCCCGGAGAGATTTGGATTAGGAGCCCTCACGTGATGAAAGGATACCTCAACAACGAGGAGGCGACGAAGGCCATAATCGACGAACACGGATGGCTGCACACCGGCGACATAGGTTACGTCGACGAAGACGACGAGGTCTTCATTGTCGATCGTCTCAAGGAACTGATCAAATACAAAGGCTTCCAAGTGGCGCCGGCTGAGTTGGAAGCCCTGCTGATTTCCCACACTCACATAGCCGACGCTGCGGTTATCCCCATGAAAAATGAAGTTGCAGGAGAGGTACCGGTTGCGTTCATTGTACGATCCGGTGGTTCCAACATCACGGAGGATGAAATTAAGCAATACATTTCGAAACAGGTTGTGTTTTATAAGAGGATTCATCGTGTCTTCTTCGTGGATTCCATCCCTAAAAGTCCTTCTGGTAAAATCTTGCGGAGACAACTTAGGGAATTGCTCGCAGCCCGTATTCCAAATTAG 1638 50.73 MAAADLSPEFIFRSKLPDITIPDHLPLHTYCFENISQFKHRPCLINGATGDTYTYDEVHVTSRRVAAGLHKLGIGKGDVIMLLLQNSPHFVLAFLGASYIGAVVTMANPFFTLPEIAKHVASSGAKLIITQAAFAEKVKSLVDKNGVSIKLIFIDPPPDGEAHFSVLTDDVKEEDMPDVKISPNDVVALPYSSGTTGLPKGVMLTHRGLVTSVAQQVDGENPHLYIRSDDVVLCVLPLFHIYSLNSIMMCSLRVGAAILIVQKFDINYVVELVGKYKVTIAPLVPPIVLAIAKSPAVGGWEMSSIRMVLSGAAPLGKELEDAFRAKLPDAILGQGYGMTEAGSALTLSLAFAKERFQIKSGACGTLMRNSEMKIVSPQTGASLPRNQPGEIWIRSPHVMKGYLNNEEATKAIIDEHGWLHTGDIGYVDEDDEVFIVDRLKELIKYKGFQVAPAELEALLISHTHIADAAVIPMKNEVAGEVPVAFIVRSGGSNITEDEIKQYISKQVVFYKRIHRVFFVDSIPKSPSGKILRRQLRELLAARIPN 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1971997 1974479 + CmaCh11G004000.1 Cma11g00400 302909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00400 545 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 7 537 - -
Cma11g00400 545 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Cma11g00400 545 CDD 4CL 21 535 - -
Cma11g00400 545 Gene3D - 4 439 IPR042099 -
Cma11g00400 545 SUPERFAMILY Acetyl-CoA synthetase-like 11 542 - -
Cma11g00400 545 Pfam AMP-binding enzyme 33 445 IPR000873 -
Cma11g00400 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 537 - -
Cma11g00400 545 Gene3D - 440 542 IPR045851 -
Cma11g00400 545 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00473 Cma-Chr2:2484147 Cma11g00400 Cma-Chr11:1971997 8.81E-50 dispersed
Cma08g00570 Cma-Chr8:3253231 Cma11g00400 Cma-Chr11:1971997 0 dispersed
Cma11g00400 Cma-Chr11:1971997 Cma14g01039 Cma-Chr14:5470037 0 dispersed
Cma18g00686 Cma-Chr18:6317824 Cma11g00400 Cma-Chr11:1971997 1.86E-136 transposed
Cma10g00401 Cma-Chr10:1859499 Cma11g00400 Cma-Chr11:1971997 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00400 K01904 - csv:101218077 846.654