Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00408 ATGCAGAGGCAGACAAGATATATGGAGAGGACGAACTCCATGAGAGAAAAAAGGGGCTTGGAGGGTGGAGATGATGAGCTGCCGGAGCGAAAGCGACCAGCTCTAGCTAGTGTGATTGTAGAAGCCCTGAAAGTGGATAGTTTACAAAAGCTCTTCTCATCAATGGAACCAATACTCCGTAGAGTGGTTAGTGAGGAAGTGGAACGTGCTTTGGCTAAGATAGGTCCTGCTAGAATTACTGGAAGGTCTTCTCCTAAAAGGATTGAAGGCCCTGATGGAAGAAACTTGCAACTGCATTTTAGGTCTAGATTGTCTCTTCCCCTGTTCACTGGAGGGAAAGTGGAAGGTGAACAGGGTGCAGCAATCCATGTTGTTCTGCTTGATGCCAACACAGGTCATGTAGTAACATCTGGACCTGAATCCTTGTCAAAATTGGACATTGTGGTTCTTGAAGGTGATTTTAACAATGAAGATGATGAAGATTGGACGGAGGAAGAATTTGAAGGTCATGTGGTAAAAGAGCGCGAAGGAAAGAGGCCTCTATTGACCGGTGACCTGCAGGTTTCCCTCAAGGAAGGTGTTGGAACGCTAGGGGATTTGACCTTCACAGATAACTCAAGTTGGATTAGGAGCAGAAAGTTCAGACTCGGGTTAAAGGTGGCTTCAGGATTTTGGGATGGTGTTCGTATTCGTGAAGCAAAAACTGAGGCTTTTACAGTTAAAGATCATCGAGGAGAACTGTATAAAAAACATTACCCACCTGCATTAAACGATGATGTGTGGAGATTAGAGAAGATTGGAAAGGATGGTTCCTTTCACAAACGACTAAATAAAAGTGGAATAGTCACCGTCGAAGACTTTCTTCGACTGGTAGTTCGAGATTCTCAAGGACTACGAAGTATCCTTGGAAGTGGTATGTCAAATAAGATGTGGGAGGCTCTCTTAGAACATGCTAAGACCTGTGTCCTGAGTGGGAAGTTGTATATTTATTATCCAGAGGAAACCAGAAATGTTGGTGTTGTTTTTAACAATATCTATGAGCTCAACGGCCTGATTGCAGAGGAACAATACTTTCCTGCTGATTCTCTGTCTGAGAGCCAGAAGGTTTATGTAGATACACTAGTGAATAAAGCATATGAAAATTGGAATCAAGTTGTAGAGTACGATGGGAGCTCACTTTTGAGCTCTAAGAAGCCTAAGAAGTCCAATGCATCCCGAAATGACTTTCAAGGAGGTCATCTTGATCTTTCTAATACTCATGTGTCAGTGCCCCGCATGCCAGTATCAGTTCAGCCTCAGCAGCCTATCGTGGATTCAGGACTCTCAGTTGCAGGGTATAATGATAATACAGCCACAAGATATTCAACCCAGCCTCAGTTTTTGAATTCAACTTCTCGACCCCAATTTGACAACTCCTCATTTACTCCAAATGAGTTGCTCGGCAATTCTAACCACGTTCATGTCACAAGAAACGACCCTAGTACTTTTGGTTTGGCTCTTGGTCCTCCGCAAGCATCGTCATCTTCAGGTTTTCAGCCGCTTGGTTCTTCTATTCAGGAATCTAATATGAATCCATTTGACTGGTCAAACAATAGAGACAAGGTAGTGGATGACTTCTTTTCAGAGGATGAGATTCGTATGAGAAGTCACGAGATGCTGGAAAATGAAGATATGCAACAATTGTTGCGAATGTTTAGCATGGGTGGCCATTCAACTGTTAACGTCCATGATGAGAGTTTTTCATTCCCATCATTCATGCCTTCACCAATGCCAAATTTTGATGATCGAAACCGTCCTGGAAAAGCTGTGGTAGGTTGGTTGAAGATCAAAGCTGCAATGAGGTGGGGCTTCTTCATCAGGAAGAAAGCAGCCGAGAGACGTGCACAGATTGTCGAGTTGGATGAGGAATAG 1911 43.54 MQRQTRYMERTNSMREKRGLEGGDDELPERKRPALASVIVEALKVDSLQKLFSSMEPILRRVVSEEVERALAKIGPARITGRSSPKRIEGPDGRNLQLHFRSRLSLPLFTGGKVEGEQGAAIHVVLLDANTGHVVTSGPESLSKLDIVVLEGDFNNEDDEDWTEEEFEGHVVKEREGKRPLLTGDLQVSLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGFWDGVRIREAKTEAFTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNKSGIVTVEDFLRLVVRDSQGLRSILGSGMSNKMWEALLEHAKTCVLSGKLYIYYPEETRNVGVVFNNIYELNGLIAEEQYFPADSLSESQKVYVDTLVNKAYENWNQVVEYDGSSLLSSKKPKKSNASRNDFQGGHLDLSNTHVSVPRMPVSVQPQQPIVDSGLSVAGYNDNTATRYSTQPQFLNSTSRPQFDNSSFTPNELLGNSNHVHVTRNDPSTFGLALGPPQASSSSGFQPLGSSIQESNMNPFDWSNNRDKVVDDFFSEDEIRMRSHEMLENEDMQQLLRMFSMGGHSTVNVHDESFSFPSFMPSPMPNFDDRNRPGKAVVGWLKIKAAMRWGFFIRKKAAERRAQIVELDEE 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1994432 2001700 - CmaCh11G004080.1 Cma11g00408 302917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00408 636 MobiDBLite consensus disorder prediction 393 417 - -
Cma11g00408 636 MobiDBLite consensus disorder prediction 9 29 - -
Cma11g00408 636 PANTHER OS02G0177800 PROTEIN 7 634 IPR012416 GO:0005516
Cma11g00408 636 Pfam Calmodulin binding protein central domain 255 321 IPR046830 -
Cma11g00408 636 Pfam Calmodulin binding protein C-terminal domain 326 388 IPR046829 -
Cma11g00408 636 PANTHER CALMODULIN-BINDING PROTEIN 60 B 7 634 - -
Cma11g00408 636 MobiDBLite consensus disorder prediction 1 29 - -
Cma11g00408 636 Pfam Calmodulin binding protein-like N-terminal domain 96 243 IPR046831 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00411 Cma11g00408 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01084 Cma-Chr5:8560888 Cma11g00408 Cma-Chr11:1994432 7.12E-63 dispersed
Cma10g00146 Cma-Chr10:663476 Cma11g00408 Cma-Chr11:1994432 8.68E-106 dispersed
Cma11g00114 Cma-Chr11:614142 Cma11g00408 Cma-Chr11:1994432 1.01E-103 dispersed
Cma11g00408 Cma-Chr11:1994432 Cma13g01015 Cma-Chr13:7800931 3.41E-100 dispersed
Cma10g00411 Cma-Chr10:1886214 Cma11g00408 Cma-Chr11:1994432 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00408 - - cmo:103494282 1135.55