Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00415 ATGGGAATTGAGGGTGCGAGTGTTGTAAAGGGTTTCCGTGGCGGATGGGGCGTCGTCAATAAACCATGCGACTCTTGCAAGACAGCCGCTGCGGCAGTCTACTGTCGACCCGACTCTGCTTTTCTCTGCCTCAATTGCGACACCAAAATTCACGGCGCTAATAAGCTCGCTTCTCGCCACGACCGCGTCTGGATGTGCGAGGTTTGTGAACAAGCTCCCGCTGCGGTCATGTGCAAGGCCGATGCTGCTGCGCTCTGTGTCACGTGCGATGCTGATATTCACTCCGCTAATCCACTTGCCCGTCGCCATGAGCGTGTCCCGGTCGAGCCTTTTTTTGATTCGGCCGAGTCATTAGTCAAACCCTCTTCCGTTTTCAGTTTTCTCATGCCCACTGAATCCAACGTCAGTGGCTGCGACGGCGCCCACCACCATGAGGAGGTGGAGGTTGCCTCTTGGCTTTTGTCCAACCCGCCTTTCAACTCTAAGCACGTTGACGGCCCTGAAATCAAGCCTTCTGCTGATCATATGTTCTTCACTGAAATGGATTCTTTTATTGACTTTGATTACCCAAATCCAGTCAGCGCAATTAACGACAGCGTCGTCCCCGTTCAGACAAAGCCACTCTCAACGCCGGTGATCAACCATACCCACTCCCCTGAAAATTGCTACGACATCGATTTCTGCAGATCCAAGCTCAATTCATTCGGCTATCAACCTCAATCTCTCAGCCACAGTGTTTCCTCTTCTTCCCTCGAAGTTGGAGTTGTTCCAGAAGGGAACTCGATGTCCGACATATCGTACCCATTGGGTCAAACAATAAGTAACGGCACGGAATCAGGTTTACCGATGTCGGTACCCGGGAACCAAGCGACTCAATTGTGTGGAATCGATCGGGAGGCGAGAGTGTTAAGGTACAGAGAGAAAAGGAAGAACCGGAAGTTCGAGAAGACAATCCGGTACGCATCGAGAAAAGCTTATGCAGAAACCCGTCCCAGAGTCAAAGGCCGGTTCGCAAAACGAAGTGATGCGTTATCAGAGGTGGATGAAATGTATGGGTCAGCCGCTTCGTCTGAGTTCCTGACAGAGTTCCAATACGGCGTGGTACCAACGTTTTGA 1116 51.52 MGIEGASVVKGFRGGWGVVNKPCDSCKTAAAAVYCRPDSAFLCLNCDTKIHGANKLASRHDRVWMCEVCEQAPAAVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDSAESLVKPSSVFSFLMPTESNVSGCDGAHHHEEVEVASWLLSNPPFNSKHVDGPEIKPSADHMFFTEMDSFIDFDYPNPVSAINDSVVPVQTKPLSTPVINHTHSPENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSMSDISYPLGQTISNGTESGLPMSVPGNQATQLCGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRVKGRFAKRSDALSEVDEMYGSAASSEFLTEFQYGVVPTF 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2035908 2037702 + CmaCh11G004150.1 Cma11g00415 302924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00415 371 CDD Bbox1_BBX-like 22 65 - -
Cma11g00415 371 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 9 371 - -
Cma11g00415 371 Pfam CCT motif 298 340 IPR010402 GO:0005515
Cma11g00415 371 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 9 371 IPR045281 GO:0009909
Cma11g00415 371 Pfam B-box zinc finger 20 61 IPR000315 GO:0008270
Cma11g00415 371 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Cma11g00415 371 ProSiteProfiles CCT domain profile. 298 340 IPR010402 GO:0005515
Cma11g00415 371 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Cma11g00415 371 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270
Cma11g00415 371 SMART bboxneu5 18 65 IPR000315 GO:0008270
Cma11g00415 371 SMART bboxneu5 66 108 IPR000315 GO:0008270
Cma11g00415 371 CDD Bbox1_BBX-like 66 108 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00679 Cma11g00415 CCT
Cma10g00418 Cma11g00415 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00338 Cma-Chr5:1477963 Cma11g00415 Cma-Chr11:2035908 1.43E-108 dispersed
Cma05g00679 Cma-Chr5:3501656 Cma11g00415 Cma-Chr11:2035908 6.95E-102 dispersed
Cma11g00415 Cma-Chr11:2035908 Cma12g00377 Cma-Chr12:1944414 2.63E-103 dispersed
Cma20g00703 Cma-Chr20:3247766 Cma11g00415 Cma-Chr11:2035908 1.02E-07 dispersed
Cma10g00418 Cma-Chr10:1909783 Cma11g00415 Cma-Chr11:2035908 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35810 PF00643 zf-B_box 8.20E-07 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00415 - - csv:101214816 640.573