Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00415 | ATGGGAATTGAGGGTGCGAGTGTTGTAAAGGGTTTCCGTGGCGGATGGGGCGTCGTCAATAAACCATGCGACTCTTGCAAGACAGCCGCTGCGGCAGTCTACTGTCGACCCGACTCTGCTTTTCTCTGCCTCAATTGCGACACCAAAATTCACGGCGCTAATAAGCTCGCTTCTCGCCACGACCGCGTCTGGATGTGCGAGGTTTGTGAACAAGCTCCCGCTGCGGTCATGTGCAAGGCCGATGCTGCTGCGCTCTGTGTCACGTGCGATGCTGATATTCACTCCGCTAATCCACTTGCCCGTCGCCATGAGCGTGTCCCGGTCGAGCCTTTTTTTGATTCGGCCGAGTCATTAGTCAAACCCTCTTCCGTTTTCAGTTTTCTCATGCCCACTGAATCCAACGTCAGTGGCTGCGACGGCGCCCACCACCATGAGGAGGTGGAGGTTGCCTCTTGGCTTTTGTCCAACCCGCCTTTCAACTCTAAGCACGTTGACGGCCCTGAAATCAAGCCTTCTGCTGATCATATGTTCTTCACTGAAATGGATTCTTTTATTGACTTTGATTACCCAAATCCAGTCAGCGCAATTAACGACAGCGTCGTCCCCGTTCAGACAAAGCCACTCTCAACGCCGGTGATCAACCATACCCACTCCCCTGAAAATTGCTACGACATCGATTTCTGCAGATCCAAGCTCAATTCATTCGGCTATCAACCTCAATCTCTCAGCCACAGTGTTTCCTCTTCTTCCCTCGAAGTTGGAGTTGTTCCAGAAGGGAACTCGATGTCCGACATATCGTACCCATTGGGTCAAACAATAAGTAACGGCACGGAATCAGGTTTACCGATGTCGGTACCCGGGAACCAAGCGACTCAATTGTGTGGAATCGATCGGGAGGCGAGAGTGTTAAGGTACAGAGAGAAAAGGAAGAACCGGAAGTTCGAGAAGACAATCCGGTACGCATCGAGAAAAGCTTATGCAGAAACCCGTCCCAGAGTCAAAGGCCGGTTCGCAAAACGAAGTGATGCGTTATCAGAGGTGGATGAAATGTATGGGTCAGCCGCTTCGTCTGAGTTCCTGACAGAGTTCCAATACGGCGTGGTACCAACGTTTTGA | 1116 | 51.52 | MGIEGASVVKGFRGGWGVVNKPCDSCKTAAAAVYCRPDSAFLCLNCDTKIHGANKLASRHDRVWMCEVCEQAPAAVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDSAESLVKPSSVFSFLMPTESNVSGCDGAHHHEEVEVASWLLSNPPFNSKHVDGPEIKPSADHMFFTEMDSFIDFDYPNPVSAINDSVVPVQTKPLSTPVINHTHSPENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSMSDISYPLGQTISNGTESGLPMSVPGNQATQLCGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRVKGRFAKRSDALSEVDEMYGSAASSEFLTEFQYGVVPTF | 371 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2035908 | 2037702 | + | CmaCh11G004150.1 | Cma11g00415 | 302924 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00415 | 371 | CDD | Bbox1_BBX-like | 22 | 65 | - | - | |
Cma11g00415 | 371 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 5 | 9 | 371 | - | - | |
Cma11g00415 | 371 | Pfam | CCT motif | 298 | 340 | IPR010402 | GO:0005515 | |
Cma11g00415 | 371 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 4 | 9 | 371 | IPR045281 | GO:0009909 | |
Cma11g00415 | 371 | Pfam | B-box zinc finger | 20 | 61 | IPR000315 | GO:0008270 | |
Cma11g00415 | 371 | Pfam | B-box zinc finger | 63 | 108 | IPR000315 | GO:0008270 | |
Cma11g00415 | 371 | ProSiteProfiles | CCT domain profile. | 298 | 340 | IPR010402 | GO:0005515 | |
Cma11g00415 | 371 | ProSiteProfiles | Zinc finger B-box type profile. | 61 | 108 | IPR000315 | GO:0008270 | |
Cma11g00415 | 371 | ProSiteProfiles | Zinc finger B-box type profile. | 23 | 65 | IPR000315 | GO:0008270 | |
Cma11g00415 | 371 | SMART | bboxneu5 | 18 | 65 | IPR000315 | GO:0008270 | |
Cma11g00415 | 371 | SMART | bboxneu5 | 66 | 108 | IPR000315 | GO:0008270 | |
Cma11g00415 | 371 | CDD | Bbox1_BBX-like | 66 | 108 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g00679 | Cma11g00415 | CCT | |
Cma10g00418 | Cma11g00415 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00338 | Cma-Chr5:1477963 | Cma11g00415 | Cma-Chr11:2035908 | 1.43E-108 | dispersed | |
Cma05g00679 | Cma-Chr5:3501656 | Cma11g00415 | Cma-Chr11:2035908 | 6.95E-102 | dispersed | |
Cma11g00415 | Cma-Chr11:2035908 | Cma12g00377 | Cma-Chr12:1944414 | 2.63E-103 | dispersed | |
Cma20g00703 | Cma-Chr20:3247766 | Cma11g00415 | Cma-Chr11:2035908 | 1.02E-07 | dispersed | |
Cma10g00418 | Cma-Chr10:1909783 | Cma11g00415 | Cma-Chr11:2035908 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35810 | PF00643 | zf-B_box | 8.20E-07 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00415 | - | - | csv:101214816 | 640.573 |