Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00420 ATGTTGATACCAGTCAGAGAAGCTGCTGCAGCTTCTTCTTCGCCCCTTTGCTTCACCCTCTCCACCCAATATCTTACCAATTCTAAGCGCTTTCCAAGGCCTAGACTTTCATTCACCCGAGCATCCTTCTCTGTTCCTAACAAGCCCCGCGCTACCAAGTCCTGGAACCTTGGCCTCACTTCCAACAGTTCTGAGAGCTCAGTTTTTGATCCCTTGGGCATCCGTCCAGATCTTTCTTCTGAATTAAGTTGTGGGTGGGAAAGTTTTCTTGGGTTTTGGGGGCAAACATTTGACAGTTCTTCAAGCACAAAACGAGATAAAGGTCCCTCAGCACGTGGATTGGCAGCTGCAATCGAGGACAGTTCCATTGACATTGGGGACTTCTTCAAAGGTCCATTGCCAGGAAAATTTCTACAGCTCTTGGGCTATTTAGCACTATCAAGGCTTGGAATCTATATCCCTCTTGGTGGAGTGAACCGAGAGGCTTTTGTTGGGAACTTGGATCAGAACAGCTTATTGAGCACTTTAGATTCATTTTCCGGTGGAGGCATTGGCAGACTAGGGATATGCTCCCTTGGCATTGTTCCCTTCATCAATGCATCAATTGTCTTCCAGCTTCTTACACAAATTTATCCAAAATTGCAAGAGCTTCAGAAAAGAGAAGGTGAAGCTGGGCGGAAGAAAATTCTTCAATACACTCGATATGCCTCAGTTGGGTTTGCAATTGTACAAGCAATTGGTCAAGTTCTGTACCTTCGCCCCTATGTTAATGATTTTAGTACAGAGTGGGTGCTTTCTTCTGTTACTTTATTAACACTTGGCTCAGTTATAACAACGTACATTGGGGAACGGATCACAGACCTAAAGCTAGGTAATGGGACATCTCTTTTAATATTCACCAGCATCATCTCCTATCTACCAGCATCCTTTGGAAGAACAGCTGCACAAGCTTTACAGGATGGTAACTATGTTGGATTGGTTGCTATTATAATCTCCTTCTTTCTATTGGTACTTGGAATCGTATATGTTCAGGAAGCAGAAAGGAAAATCCCGCTCAACTATGCTTCAAGATACACAAGCAGCGGTGGAGGGCTTCAGAAATCTGCTTACCTTCCCTTCAAGGTAAATAGTTCTGGTGTAATGCCGATCATTTTTTCAACATCTACATTGTCCCTGCCGGGTACTCTAGCTCGCTTCACGGGTTTATCTGTCCTAAAGAACGCTGCATTTGCTTTAAATCCAGGAGGCTCATTCTATCTTCCAACCAACATCCTTTTGATAGCCTTCTTCAACTATTACTACACATTCCTACAGTTGGATCCCGATGATGTGAGCGAACAATTGAAGCGCCAGGGTGCTTCAATTCCCCTCGTCCGTCCGGGCAAAAGTACAGCTTCGTTTCTGAAAGCGGTTCTAAGTCGGATTTCAGTTCTTGGTTCTGCTTTCTTGGCAATCCTTGCTGCTGGTCCTGCGGTGATTGAGCAAACAACACACTTAACAGCATTTCGAGGATTTGCAGGAACCTCTGTTCTCATTCTTGTCGGTTGTGCTACAGACACTGCCAGAAAAGTACAAGCTGAGATAATCTCTCAGAAGTACAAGAACATAGAGTTCTATGACATCGATAGGTATACTCCATGA 1641 44.36 MLIPVREAAAASSSPLCFTLSTQYLTNSKRFPRPRLSFTRASFSVPNKPRATKSWNLGLTSNSSESSVFDPLGIRPDLSSELSCGWESFLGFWGQTFDSSSSTKRDKGPSARGLAAAIEDSSIDIGDFFKGPLPGKFLQLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINASIVFQLLTQIYPKLQELQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTEWVLSSVTLLTLGSVITTYIGERITDLKLGNGTSLLIFTSIISYLPASFGRTAAQALQDGNYVGLVAIIISFFLLVLGIVYVQEAERKIPLNYASRYTSSGGGLQKSAYLPFKVNSSGVMPIIFSTSTLSLPGTLARFTGLSVLKNAAFALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTASFLKAVLSRISVLGSAFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDRYTP 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2069032 2073756 + CmaCh11G004200.1 Cma11g00420 302929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00420 546 Hamap Protein translocase subunit SecY [secY]. 125 537 IPR026593 -
Cma11g00420 546 Pfam SecY 189 520 IPR002208 GO:0015031|GO:0016020
Cma11g00420 546 ProSitePatterns Protein secY signature 1. 188 207 IPR030659 -
Cma11g00420 546 PRINTS Preprotein translocase SecY subunit signature 137 155 - -
Cma11g00420 546 PRINTS Preprotein translocase SecY subunit signature 187 207 - -
Cma11g00420 546 PRINTS Preprotein translocase SecY subunit signature 229 252 - -
Cma11g00420 546 PRINTS Preprotein translocase SecY subunit signature 261 286 - -
Cma11g00420 546 PRINTS Preprotein translocase SecY subunit signature 287 310 - -
Cma11g00420 546 PRINTS Preprotein translocase SecY subunit signature 378 397 - -
Cma11g00420 546 PRINTS Preprotein translocase SecY subunit signature 417 439 - -
Cma11g00420 546 PRINTS Preprotein translocase SecY subunit signature 472 490 - -
Cma11g00420 546 PRINTS Preprotein translocase SecY subunit signature 506 524 - -
Cma11g00420 546 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 54 542 IPR002208 GO:0015031|GO:0016020
Cma11g00420 546 SUPERFAMILY Preprotein translocase SecY subunit 129 527 IPR023201 -
Cma11g00420 546 Gene3D SecY subunit domain 128 533 IPR023201 -
Cma11g00420 546 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC 54 542 - -
Cma11g00420 546 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 136 533 IPR002208 GO:0015031|GO:0016020
Cma11g00420 546 ProSitePatterns Protein secY signature 2. 280 297 IPR030659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00420 Cma-Chr11:2069032 Cma19g00047 Cma-Chr19:251650 7.48E-38 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00420 K10956 - csv:101222431 971.074