Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00421 ATGGATTCACTGCTTCTCCAAGTAAACGGAAGATTCTTCCCTTCGCCGCCACAGCTACAGCCTTACTATCTTGATGCACGGCCTCCTCCTTTTGCCCAGTCGAGTGGATTCAACTTGGAGAACAAGGTGAGTCCAAGTATACTCCTCATCATAATCATTCTTGCCATCGTCTTCTTCGTCTCTGGTTTGCTTCATCTTCTCGTTAGATTCCTCTGGACTCCCCCATTACAGAGAGACCCTGAAAGTTCAGACAATGTGACTGCCTTTCAGGGTCAATTACAGCAGCTCTTTCATCTCCATGACTCTGGGGTTGACCAGTCCTTCATTGACACACTTCCTGTTTTCCATTACAAAGCCATTATTGGATCCAAGTCCCCATTTGATTGCGCTGTTTGTCTATGTGAGTTTGAGCCTGAGGACAAGCTCAGGCTGTTGCCTAAATGCAGCCATGCTTTTCACACAGAGTGTATTGATACATGGCTTTTGTCTCACTCAACCTGCCCTCTTTGTAGATCTAGTTTGCTTCCGGATCATTTCTCTCCACATACCAGTTGTGCGCCAATTGTTCTTGTTCTTGAATCTGGGAGTGAGAGCTCTAGAGATAATGTGTCGAACACACAGGCTACAAATCCGATTACAGGGTCAAATTCGCAAGTGGGTCTTGGTGGGGATAGCGAATTTGACGCTGGGTCTAGCGAGATTGGGAAATTAGAGGACTCAAAAGCAACTGTAGTGACTGTGAAGCTCGGAAAATACAAAAATATCGATGCTGGTGAAGGTGGAAGTAGCGAGAACAAGAATATGGATTCTCGTAGGTGTTTTTCAATGGGGTCTTTCGAATATGTAATGGAGGAGAATTCGTCGCTGAAAGTGGCCATTAGAAGCACCCCAGCGAAAAAGCAGCCAAGCAGGAAGCCAGCTCTGCCATTGACACCAGGTTACAGAGCAGCCATGTCCGAATGCGAGTGCGAATCCAGAAGAGAGTTCCGACTCAGTGGGATTGAACCGTTTCGAGAAGTGAGAAGGGGCGAGAATACTGATAGGAATTCTAAGAAAATAGATAGTTTCTCAGTATCGAAGATTTGGCTAAGAGGAAAAAACCAGAGAGAAACGTCCACAGAATCATCAAGAAGGGCAGTTTCGTTTCGATTTCCCATTCAGAAGAATGGTGGGGATTGGAGTGCTTCAGAGATGGGCGTTTCCAGATGGGAAAATGAAATAATCCGAAGTGAAACGGAATTGGATGAAGAAAACCAGAGTCGTTGCAGTTTCGATTCTCAATTCAATCAATCTTTCGCGAAGAGGACGTTGCTATGGCTGATGGGAAAACAAAACAAGAAAACAGCCAATTTCTCACTCGACCATTCCCATTTTGGATCATTCATGTTTGCTTTTAACAAACGACTGAGCGATGGCACAGCAGCCTCCAACACAGTGCTGCAAGAAGCTGGATCAAAAGGGTCATCGTCTCTCTCTCTCTTTTTCTTCCTCTGTGCTTCTCCTCCAGCTACTAGGCCATGCTGCTGCTATTTTGACGGGTCATTGAGAATTTCTCGTTTCAGCTTCTTTCTTTTGCTTATGGGCATGGAACTGAGGAAGGAAAAGCTTGTTAGGTTTTATTCTGATCACAAAAAATATAAGAAATCTGCCATTGGGAACAACAATGAAGCAGGGCAACTTGAGAAGTCATCATCGAAATACTACATTCCGTCGTCGACATTCTTAATACCTGACAACGGATTAGGGGCAAGCAAAAGTAAATCTGCTGAAACCTTTAGAACCGAGAAGTCCAAAGTGTTTCCGGAGGACCATGAACCATGGAGCAGAAGAATACTAGACCCTGGCAGAAAAATTGTTCTGAAATGGAACCGGGTGTTCATTTGCTCATGTTTATTGGCACTCTTTGTTGACCCGCTGTACCTTTACTTGCCATCTTTGGCTGGGAATAGGAAATCCTCATGTGTGAGGACAGACTGGAAATTGCGAATTGTTGTGACCTGTTTCCGGACTGTTGCAGATTTTTTCTATCTTCTGCACATGATTATCAAGTTCAGAACAGCTTATGTTGCTCCTAGCTCTCGAGTTTTTGGGAGAGGTGAGCTTGTGATGGATTCGAAGATGATAGCAAAGAGGTATCTTAGATCTGACTTTTTTGTCGATCTAATTGCCACGTTGCCTCTCCCTCAGATTGTCATCTGGTTTATCATACCCGCAACAAGAAGTCGTCTAACTGATCATAAAAACAATGCGCTTGCGCTTATTGTTCTGCTTCAATATATTCCAAGATTGTATTTGATTTTCCCTCTAAGTTCAGAGATAATCAAAGCGAATGGAGTTGTTACAAAAACTGCTTGGGCAGGAGCTGCTTATAATCTTCTACTCTATATGTTGGCTAGCCACGTTCTAGGTGCTACATGGTATTTGCTGTCAGTTGATAGATATACATCATGCTGGAAATCATTATGTAGGAAGAAGGAATATAATCCACTAGAATGCAATCCAACTTTTTTTGATTGCGATACACTTAACCTTAATGACCGCAATACATGGGCAAATAGTACCCTTGTTTTCGACAAATGTGGCCCTAGTGGAATTTTCAAGTATGGCATTTTTGGGAATGCAATGTCAAAGAATGTTGTCTCTTCAAGCTTTGTTGAAAAGTATTTCTATTGTTTGTGGTGGGGCTTGCAAAACCTGAGTTCATATGGACAGAATTTGGAAACAACCACTTTCATTGGTGAGACACTGTTCGCTGTGCTTATAGCCATCTTAGGCCTTGTATTATTTGCCCATCTGATTGGGAATATGCAGACGTATCTGCAATCCCTCACTGTGAGACTTGAAGAATGGAGACTAAAACGAAGAGACACTGAAGAGTGGATGAGACATCGTCAACTCCCTGAAGACTTGAAGCGACGTGTTCGACGTTTTGTACAATATAAGTGGGTGGCAACTCGAGGAGTTGATGAAGAAGCCATCTTACAGAGCTTACCGGCTGATCTTCGACGTGATATTCAGTGCCACCTATGTCTAGATCTTGTCCGACGAGTCCCTTTCTTCTCACAGATGGATGATCAGCTACTAGATGCAATATGTGAACGTCTGATATCCTCCTTGAGCACTGAGGGTACCTATATAGTACGAGAGGGTGACCCAGTAACCGAGATGCTGTTCGTTATCCGAGGCAGATTGGAGAGTTCTACTACAAATGGAGGTCGCTCTGGTTTCTTCAACTCCATAACGTTGCGTCCTGGAGACTTTTGTGGGGAGGAACTACTTTCTTGGGCGTTGCACCCAAAATCCACCACCAACTTGCCCTCCTCAACTAGAACAGTCAGAGCGCTCAATGAAGTTGAAGCTTTTGCACTCCGTGCTGAAGATCTTAAATTTGTAGCCAACCAATTTAGACGTCTGCACAGTAAAAAGTTGCAGCACACATTCCGCTTTTACTCTCATCATTGGAGAACATGGGCAGCTTGCTTTATTCAAGCTGCTTGGCGTCGCCATAAGAAAAGGATGATGGCAAAAGATCTCTTAATGAGGGAATCGTTTATATTATCTGAAGAAGTGGCTAGTGAAACTGGCCAAGGAGGAGGGGAACAATTTTGTGTTGTTTCAAATCCTTCTCAGACAAAAATGAATCTGGATGTTACCTTACTGGCTTCAAGGTTTGCTGCAAACGCAAGGAGAGGCGCCCAGAAAATGAAAGATGACATGCCAAAGCTGCAGAAGCCTGATGAACCCGACTTTTCCATTGAGCCAGATAGATAA 3771 43.75 MDSLLLQVNGRFFPSPPQLQPYYLDARPPPFAQSSGFNLENKVSPSILLIIIILAIVFFVSGLLHLLVRFLWTPPLQRDPESSDNVTAFQGQLQQLFHLHDSGVDQSFIDTLPVFHYKAIIGSKSPFDCAVCLCEFEPEDKLRLLPKCSHAFHTECIDTWLLSHSTCPLCRSSLLPDHFSPHTSCAPIVLVLESGSESSRDNVSNTQATNPITGSNSQVGLGGDSEFDAGSSEIGKLEDSKATVVTVKLGKYKNIDAGEGGSSENKNMDSRRCFSMGSFEYVMEENSSLKVAIRSTPAKKQPSRKPALPLTPGYRAAMSECECESRREFRLSGIEPFREVRRGENTDRNSKKIDSFSVSKIWLRGKNQRETSTESSRRAVSFRFPIQKNGGDWSASEMGVSRWENEIIRSETELDEENQSRCSFDSQFNQSFAKRTLLWLMGKQNKKTANFSLDHSHFGSFMFAFNKRLSDGTAASNTVLQEAGSKGSSSLSLFFFLCASPPATRPCCCYFDGSLRISRFSFFLLLMGMELRKEKLVRFYSDHKKYKKSAIGNNNEAGQLEKSSSKYYIPSSTFLIPDNGLGASKSKSAETFRTEKSKVFPEDHEPWSRRILDPGRKIVLKWNRVFICSCLLALFVDPLYLYLPSLAGNRKSSCVRTDWKLRIVVTCFRTVADFFYLLHMIIKFRTAYVAPSSRVFGRGELVMDSKMIAKRYLRSDFFVDLIATLPLPQIVIWFIIPATRSRLTDHKNNALALIVLLQYIPRLYLIFPLSSEIIKANGVVTKTAWAGAAYNLLLYMLASHVLGATWYLLSVDRYTSCWKSLCRKKEYNPLECNPTFFDCDTLNLNDRNTWANSTLVFDKCGPSGIFKYGIFGNAMSKNVVSSSFVEKYFYCLWWGLQNLSSYGQNLETTTFIGETLFAVLIAILGLVLFAHLIGNMQTYLQSLTVRLEEWRLKRRDTEEWMRHRQLPEDLKRRVRRFVQYKWVATRGVDEEAILQSLPADLRRDIQCHLCLDLVRRVPFFSQMDDQLLDAICERLISSLSTEGTYIVREGDPVTEMLFVIRGRLESSTTNGGRSGFFNSITLRPGDFCGEELLSWALHPKSTTNLPSSTRTVRALNEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRHKKRMMAKDLLMRESFILSEEVASETGQGGGEQFCVVSNPSQTKMNLDVTLLASRFAANARRGAQKMKDDMPKLQKPDEPDFSIEPDR 1256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2074262 2084202 - CmaCh11G004210.1 Cma11g00421 302930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00421 1256 Pfam Ion transport protein 622 946 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma11g00421 1256 SUPERFAMILY RING/U-box 109 177 - -
Cma11g00421 1256 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Cma11g00421 1256 MobiDBLite consensus disorder prediction 1230 1256 - -
Cma11g00421 1256 CDD CAP_ED 1019 1150 IPR000595 -
Cma11g00421 1256 CDD RING-H2_PA-TM-RING 128 171 - -
Cma11g00421 1256 Gene3D - 650 944 - -
Cma11g00421 1256 ProSiteProfiles cAMP/cGMP binding motif profile. 1019 1103 IPR000595 -
Cma11g00421 1256 SUPERFAMILY Voltage-gated potassium channels 618 941 - -
Cma11g00421 1256 Pfam Ring finger domain 128 171 IPR001841 -
Cma11g00421 1256 PRINTS EAG/ELK/ERG potassium channel family signature 982 989 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma11g00421 1256 PRINTS EAG/ELK/ERG potassium channel family signature 680 689 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma11g00421 1256 PRINTS EAG/ELK/ERG potassium channel family signature 797 807 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma11g00421 1256 PRINTS EAG/ELK/ERG potassium channel family signature 932 941 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma11g00421 1256 PRINTS EAG/ELK/ERG potassium channel family signature 914 925 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma11g00421 1256 PRINTS EAG/ELK/ERG potassium channel family signature 888 905 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma11g00421 1256 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 578 1253 - -
Cma11g00421 1256 SMART cnmp_10 1019 1150 IPR000595 -
Cma11g00421 1256 SUPERFAMILY cAMP-binding domain-like 949 1141 IPR018490 -
Cma11g00421 1256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 176 IPR013083 -
Cma11g00421 1256 MobiDBLite consensus disorder prediction 199 225 - -
Cma11g00421 1256 Gene3D Helix hairpin bin 947 1010 - -
Cma11g00421 1256 Gene3D Jelly Rolls 1017 1137 IPR014710 -
Cma11g00421 1256 MobiDBLite consensus disorder prediction 199 222 - -
Cma11g00421 1256 Coils Coil 400 420 - -
Cma11g00421 1256 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 578 1253 - -
Cma11g00421 1256 SMART ring_2 129 170 IPR001841 -
Cma11g00421 1256 Pfam Cyclic nucleotide-binding domain 1042 1130 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02719 Cma-Chr4:18348015 Cma11g00421 Cma-Chr11:2074262 6.25E-62 dispersed
Cma05g01038 Cma-Chr5:8307756 Cma11g00421 Cma-Chr11:2074262 0 dispersed
Cma10g00132 Cma-Chr10:600493 Cma11g00421 Cma-Chr11:2074262 0 dispersed
Cma10g00429 Cma-Chr10:1958039 Cma11g00421 Cma-Chr11:2074262 0 dispersed
Cma11g00421 Cma-Chr11:2074262 Cma14g00640 Cma-Chr14:3173518 0 dispersed
Cma12g00997 Cma-Chr12:7979241 Cma11g00421 Cma-Chr11:2074262 8.70E-97 dispersed
Cma15g00323 Cma-Chr15:1499441 Cma11g00421 Cma-Chr11:2074262 9.33E-61 dispersed
Cma17g00450 Cma-Chr17:2675880 Cma11g00421 Cma-Chr11:2074262 1.26E-13 dispersed
Cma18g00156 Cma-Chr18:792975 Cma11g00421 Cma-Chr11:2074262 1.96E-54 dispersed
Cma01g01579 Cma-Chr1:10909946 Cma11g00421 Cma-Chr11:2074262 0 transposed
Cma10g00428 Cma-Chr10:1952298 Cma11g00421 Cma-Chr11:2074262 0 wgd
Cma11g00421 Cma-Chr11:2074262 Cma12g00858 Cma-Chr12:6341807 0 wgd
Cma11g00421 Cma-Chr11:2074262 Cma05g00664 Cma-Chr5:3412502 1.08E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00421 K05391 - csv:101218643 1394.41