Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00435 ATGGTCTTCTTCTTTTTCTTTCCTCTGCATTTCTTCACAGCTATGGCTCCTAAACTCTTCTGTTTGATCATTTTCTCTTCTGCTTTGCTTTGCCTCTCCTATGAACCTCGAAATCCTGAAGTGGAAGCTCTGATTCATGTGAAGGCAGCATTGAATGATCCGCACGCTGTGCTCAGCAATTGGGATGAAGACTCAGTGGACCCTTGCAGTTGGGCAATGATCACATGCTCCCCTGATAACCTCGTTGTAGGACTAGGAGCTCCGAGCCAGTCTCTTTCCGGAACTTTGTCTGGGGCGATTGGGAACCTAACAAATCTTCGCCAAGTGTTGCTGCAGAACAATAACATTTCCGGTCAAATTCCCATTGAACTTGGAGCTCTCCCATTGCTTCAAACATTAGATCTCTCAGAAAATCACTTCTCTGGCCCTATACCAGCATCCTTTGGTCAGCTGAACGGTCTACGCTACCTGAGGGTGAACAATAATAGCTTGTCCGGGCCTTTTCCCGTGTCTTTGGCCAAAATCCCCCAGCTTGCTTTCTTGGATTTGTCTTTTAACAATCTTAGTGGACCAGTGCCTGTGTTTCCGGCCAGAACATTCAATGTGGTGGGAAATCCGATGATTTGTGGAAGTAACCCTACTGAGGGTTGCTCTGGCTCAGCCAATGCCGTTGCTCTTTCTCTCTCTCTAGAATCCTCCCCTGGAAGACTCAGGTCCAAAAGAATAGCAGTGGCACTTGGGGTCAGCCTCAGCTGTGCTTTTCTGATACTCCTAGCATTTGTGATTCTTTGGCGCAGAAAGAATCACAAGGCCAAGACCATTCTAGACATCAATGTAGACAATCAAGAAGTTGGGCTTGTGCGCTTAGGCAACCTGAGGAACTTCAGTTTCAAAGAGCTCCAATTAGCAACAGGGCATTTCAGTTCCAAAAATATACTTGGGGCTGGAGGATTTGGTAATGTGTACAAGGGAAAGCTAGGAGATGGGAGTATGGTGGCAGTGAAACGGCTAAAAGATGTTACGGGTACCACTGGAGAGTCTCAGTTCCGCACAGAGTTGGAGATGATTAGCCTGGCAGTTCATCGCAATTTGCTTCGGCTAATTGGTTATTGTGCCACTTCTCACGAGAGGCTCTTAGTGTACCCATACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGAAAGCCAGCATTGGACTGGAATACAAGGAAGAGAATAGCAATTGGTTCTGCAAGGGGTCTGCTGTACCTCCATGAGCAATGTGATCCTAAGATAATCCATAGAGATGTGAAGGCTGCGAATGTGCTTCTGGATGACTTCTGTGAAGCTGTAGTTGGTGATTTTGGACTTGCAAAGCTTCTTGACCATGCTGACTCTCATGTGACCACTGCTGTTCGTGGCACTGTTGGGCACATTGCTCCAGAGTATCTTTCAACCGGCCAATCTTCTGAGAAGACTGATGTGTTTGGGTTTGGCATTCTTTTGATAGAGCTGATAACTGGAATGAGAACTTTTGAATTTGGGAAAACAATTAATCAAAAAGGCGTCATGCTTGAGTGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGAATTGCTTGTGGACAGAGAGCTAGGGAACAACTATGATCAGATTGAGGTTGGGGAAATGTTGCAAGTGGCTCTTCTTTGCACTCAGTATTTACCTGCTCACCGTCCTAAGATGTCGGAGGTGGTCCGAATGCTTGAAGGGGATGGCCTTGTTCAGAAATGGGCTGCATCCCACACTCATAATGACTTCAATGTCAACCTCTTTCATTCACGGAACAGCTGCAAAAGTACATACAACCCCACATATGCTTTGAAGAATAATGGCAACGATCGAGAACATTCAAGCATGTTGAGTTTTACAATGGACGATGATGATGATGAGCGATCTTTGGACTCCTATGCCATGGAACTCTCCGGTCCAAGATAG 1959 45.99 MVFFFFFPLHFFTAMAPKLFCLIIFSSALLCLSYEPRNPEVEALIHVKAALNDPHAVLSNWDEDSVDPCSWAMITCSPDNLVVGLGAPSQSLSGTLSGAIGNLTNLRQVLLQNNNISGQIPIELGALPLLQTLDLSENHFSGPIPASFGQLNGLRYLRVNNNSLSGPFPVSLAKIPQLAFLDLSFNNLSGPVPVFPARTFNVVGNPMICGSNPTEGCSGSANAVALSLSLESSPGRLRSKRIAVALGVSLSCAFLILLAFVILWRRKNHKAKTILDINVDNQEVGLVRLGNLRNFSFKELQLATGHFSSKNILGAGGFGNVYKGKLGDGSMVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGSARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRTFEFGKTINQKGVMLEWVKKIQQEKKVELLVDRELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVQKWAASHTHNDFNVNLFHSRNSCKSTYNPTYALKNNGNDREHSSMLSFTMDDDDDERSLDSYAMELSGPR 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2124893 2129418 - CmaCh11G004350.1 Cma11g00435 302944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00435 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Cma11g00435 652 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Cma11g00435 652 MobiDBLite consensus disorder prediction 616 652 - -
Cma11g00435 652 ProSiteProfiles Protein kinase domain profile. 307 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00435 652 Gene3D Ribonuclease Inhibitor 37 219 IPR032675 -
Cma11g00435 652 SUPERFAMILY Protein kinase-like (PK-like) 287 577 IPR011009 -
Cma11g00435 652 SMART serkin_6 307 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00435 652 Gene3D Phosphorylase Kinase; domain 1 276 383 - -
Cma11g00435 652 CDD TM_EGFR-like 239 272 - -
Cma11g00435 652 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Cma11g00435 652 Pfam Leucine rich repeat 129 188 IPR001611 GO:0005515
Cma11g00435 652 Gene3D Transferase(Phosphotransferase) domain 1 384 595 - -
Cma11g00435 652 SUPERFAMILY L domain-like 38 202 - -
Cma11g00435 652 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 20 652 - -
Cma11g00435 652 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 20 652 - -
Cma11g00435 652 Pfam Protein kinase domain 308 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00444 Cma11g00435 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00435 Cma-Chr11:2124893 Cma15g00205 Cma-Chr15:1002463 0 dispersed
Cma10g00444 Cma-Chr10:2008732 Cma11g00435 Cma-Chr11:2124893 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68881 PF00069 Pkinase 2.70E-42 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00435 - - csv:101218629 1179.85