Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00448 | ATGGAAGCCAGCGCAGGACTTGTCGCTGGTTCTCACAACCGCAATGAGCTTGTTGTCATTCATGGCCATGAGGAGCCGAAGCCATTGAAGAACTTGGACGGTCAAGTTTGTGAGATCTGTGGTGATGAAGTGGGGCTTACTGTGGATGGTGATCTGTTTGTTGCCTGCAATGAATGTGGTTTTCCAGTCTGCAGACCTTGTTATGAGTATGAAAGAAGAGAAGGAAGCCAACTGTGTCCTCAGTGTAAAACTAGATATAAGCGACTTAAAGGTGAAATACAGAACGAAGGACTATGCAATAACAAGTTTCGAGTTTTCTTTTTTCTTAAACTCTCTCTTTTTGGGTATTGTGAAGGGAGTCCGAGGGTCGAGGGAGATGATGATGAAGAAGACATAGATGACATTGAACATGAATTCAACATTGATGATGAGAGGAATAAGCACAGTCATATGGCAGAAGCTATTCTTCATGGAAAGATGAGCTACGGTAGAGGGCCAAATGATGATGAAAATGCACAGTATGGAAGAACAGAGCTAGAAAATGTTGAGCTTCCTTTATCATCCCAGGGTTATGGAGATCAGATATCATCTTCTTCACTGCACAAACGAGTGCATCCATTTCCAGCTTCTGAACCAGGCAGTGGAAGATGGGATGAAAAGAGAGAGGAAGGTTGGAAAGATAAAATGGATGATTGGAAATTGCAGCAAGGCAATCTTGGGCCTGAACCTGATGATGCCAATGACCCTGACATGGCTATATGTTTGAAACTTTTGTTCGCGGAACTCCATACAGCCACTATCAAGGAACCAATAGCATCTAGCAAAATTAATCCTTACCGGATGGTTATTGTGGCTCGGCTCGTTATTCTTGCCTTCTTCCTTCGGTATCGGATTCTAAATCCAGTGCATGATGCATTGGGTTTGTGGCTAACTTCTGTGATATGTGAAATCTGGTTTGCATTTTCGTGGATCCTCGATCAGTTCCCCAAATGGTTCCCAATCGATCGTGAAACCTACTTGGATCGTCTGTCCCCTCAGGGCGAACCTAATTTGCTTGCTCCAGTGGACATTTTTGTCAGTACTGTTGATCCGATGAAGGAACCTCCTCTTGTAACAGCTAACACAATCTTATCTATCTTGGCCATGGACTATCCAGTTGATAAGGTTTCATGCTACGTTTCAGATGATGGAGCTTCCATGCTTACCTACGAAGCAATGTCTGAAACTGCAGAATTTGCCAGGAAATGGGTGCCCTTCTGTAAGAAGTTTTCGATAGAACCTCGAGCACCTGAAATGTACTTTTGTGAGAAGATCGATTATCTCAAGGATAAAGTCCAACCAACATTTGTAAAGGAGCGTCGGGCAATGAAGAGAGAATATGAAGAATTCAAGGTCAGGATAAATGCCCAAGTAGCAAAAGCCATAAAAGTTCCCACAGAAGGATGGATAATGCAAGATGGAACACCATGGCCAGGCAACAACACAAAAGATCACCCTGGTATGATCCAAGTCTTTTTGGGTCACAGTGGAGGCCCTGATGCAGAAGGGAATGAACTCCCCCGCTTAGTGTACGTATCTCGTGAGAAAAGACCAGGTTTCCAACATCACAAGAAGGCTGGTGCCATGAATGCCTTGATTCGTGTATCTGCAGTGCTTACAAATGCTCCATTCATGTTGAACTTAGATTGTGATCACTACATAAACAATAGCAAAGCAGCAAGAGAGGCAATGTGTTTCCTTATGGACCCTCAAGTTGGAAAGAAAGTCTGCTATGTACAATTTCCACAAAGATTTGATGGAATAGATAGGCATGATCGTTATGCCAACAGAAATACGATTAACATGCGAGGTTTAGATGGAATTCAGGGTCCTGTATATGTTGGCACAGGGTGTGTTTTCAGGAGACGGGCTTTATATGGTTATGAACCCCCAAAAGGACCGAAGCGCCCAAAAATGGTATGCTGTGACTGTTGTCCATGCTTTGGACGTCGCAAGAAGCTTAAGGGCTCTAAAAGTGGGGTAGATGGAGATGCTGCAGCGATGGAAGATAACAAGGAGCTGCTAATGTCGCAAATGAATTTCGAAAAGAAATTTGGGCAGTCATCAATTTTTGTTACCTCGACTTTGATTGAGAAGGTGGTGTTCCACCCTCCTCGGGTCCAGCGACCCTACTTAAGGAAGCAATTCATGTTATCAGTTGCGGTTATGAAGACAAAACCGAATGGGTTGGGCTGGATTTATGGGTCGATCACAGAAGATATTCTAACAGATTTCAAGATGCATTGTCGTGGCTGGAGATCTATATACTGCATGCCAAAGAGACCTGCATTTAAGGGTACAGCTCCCATTAACTTGTCTGATCGGCTGAACCAGGTGCTTCGGTGGGCACTCGGGTCTATTGAAATCTTTTTCAGCAACCACTGCCCTATTTGGTATGGTTATAAGGGTGGGAAGCTAAAGTGGCTAGAGAGATTTGCATACGTCAACACAACTGTCTACCCCTTCACTTCAATACCACTTCTCGCCTACTGTACCCTCCCTGCGATTTGCCTGCTCACCGATAAGTTCATCATGCCACCGATAAGCACCTTTGCAAGTCTCTACTTCATTGCCTTGTTTCTTTCCATTTTTGCTACGGGTATTCTAGAGCTTAAATGGAGTGGAGTTAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTATTTCAGCTCATCTATTTGCTGTTGTTCAAGGTCTATTGAAGGTTTTGGCTGGAATTGATACTAGCTTCACAGTTACATCCAAGGCAACAGATGACGAAGATTTTGGAGAATTATATGCCTTTAAATGGACCACTTTGCTAATCCCTCCAACAACTATTTTGATCATCAACCTTGTTGGGGTTGTTGCAGGCATCTCAGATGCCATAAACAATGGCTATCAATCATGGGGACCTCTATTTGGGAAGCTTTTCTTTGCCTTCTGGGTGATTGTCCATCTCTACCCGTTCCTTAAGGGTCTGATGGGCCGACAAAACCGCACACCGACTATAGTCGTCATATGGTCCGTGCTGTTGGCTTCAATCTTCTCCTTGCTTTGGGTTCGAATCAATCCATTTGTGATGAAGACAAAGGGACCAGATACCAAGCAATGTGGATTAAATTGCTGA | 3162 | 43.9 | MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDEVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGEIQNEGLCNNKFRVFFFLKLSLFGYCEGSPRVEGDDDEEDIDDIEHEFNIDDERNKHSHMAEAILHGKMSYGRGPNDDENAQYGRTELENVELPLSSQGYGDQISSSSLHKRVHPFPASEPGSGRWDEKREEGWKDKMDDWKLQQGNLGPEPDDANDPDMAICLKLLFAELHTATIKEPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSPQGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKVSCYVSDDGASMLTYEAMSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAIKVPTEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGPDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTINMRGLDGIQGPVYVGTGCVFRRRALYGYEPPKGPKRPKMVCCDCCPCFGRRKKLKGSKSGVDGDAAAMEDNKELLMSQMNFEKKFGQSSIFVTSTLIEKVVFHPPRVQRPYLRKQFMLSVAVMKTKPNGLGWIYGSITEDILTDFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPIWYGYKGGKLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPISTFASLYFIALFLSIFATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKVLAGIDTSFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRINPFVMKTKGPDTKQCGLNC | 1053 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2192739 | 2197140 | + | CmaCh11G004480.1 | Cma11g00448 | 302957 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00448 | 1053 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 368 | 877 | IPR029044 | - | |
Cma11g00448 | 1053 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 1 | 93 | - | - | |
Cma11g00448 | 1053 | ProSiteProfiles | Zinc finger RING-type profile. | 37 | 83 | IPR001841 | - | |
Cma11g00448 | 1053 | MobiDBLite | consensus disorder prediction | 188 | 203 | - | - | |
Cma11g00448 | 1053 | PANTHER | CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] | 119 | 1053 | - | - | |
Cma11g00448 | 1053 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 137 | IPR013083 | - | |
Cma11g00448 | 1053 | SUPERFAMILY | RING/U-box | 21 | 94 | - | - | |
Cma11g00448 | 1053 | MobiDBLite | consensus disorder prediction | 188 | 222 | - | - | |
Cma11g00448 | 1053 | PANTHER | CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] | 1 | 93 | - | - | |
Cma11g00448 | 1053 | CDD | mRING-HC-C4C4_CesA_plant | 35 | 85 | - | - | |
Cma11g00448 | 1053 | Pfam | Zinc-binding RING-finger | 27 | 93 | IPR027934 | - | |
Cma11g00448 | 1053 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 119 | 1053 | - | - | |
Cma11g00448 | 1053 | Pfam | Cellulose synthase | 355 | 1047 | IPR005150 | GO:0016020|GO:0016760|GO:0030244 | |
Cma11g00448 | 1053 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 472 | 642 | IPR029044 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g00448 | Cma-Chr11:2192739 | Cma07g01319 | Cma-Chr7:7466028 | 0 | dispersed | |
Cma10g00457 | Cma-Chr10:2078387 | Cma11g00448 | Cma-Chr11:2192739 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00448 | K10999 | - | csv:101214842 | 1883.61 |