Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00448 ATGGAAGCCAGCGCAGGACTTGTCGCTGGTTCTCACAACCGCAATGAGCTTGTTGTCATTCATGGCCATGAGGAGCCGAAGCCATTGAAGAACTTGGACGGTCAAGTTTGTGAGATCTGTGGTGATGAAGTGGGGCTTACTGTGGATGGTGATCTGTTTGTTGCCTGCAATGAATGTGGTTTTCCAGTCTGCAGACCTTGTTATGAGTATGAAAGAAGAGAAGGAAGCCAACTGTGTCCTCAGTGTAAAACTAGATATAAGCGACTTAAAGGTGAAATACAGAACGAAGGACTATGCAATAACAAGTTTCGAGTTTTCTTTTTTCTTAAACTCTCTCTTTTTGGGTATTGTGAAGGGAGTCCGAGGGTCGAGGGAGATGATGATGAAGAAGACATAGATGACATTGAACATGAATTCAACATTGATGATGAGAGGAATAAGCACAGTCATATGGCAGAAGCTATTCTTCATGGAAAGATGAGCTACGGTAGAGGGCCAAATGATGATGAAAATGCACAGTATGGAAGAACAGAGCTAGAAAATGTTGAGCTTCCTTTATCATCCCAGGGTTATGGAGATCAGATATCATCTTCTTCACTGCACAAACGAGTGCATCCATTTCCAGCTTCTGAACCAGGCAGTGGAAGATGGGATGAAAAGAGAGAGGAAGGTTGGAAAGATAAAATGGATGATTGGAAATTGCAGCAAGGCAATCTTGGGCCTGAACCTGATGATGCCAATGACCCTGACATGGCTATATGTTTGAAACTTTTGTTCGCGGAACTCCATACAGCCACTATCAAGGAACCAATAGCATCTAGCAAAATTAATCCTTACCGGATGGTTATTGTGGCTCGGCTCGTTATTCTTGCCTTCTTCCTTCGGTATCGGATTCTAAATCCAGTGCATGATGCATTGGGTTTGTGGCTAACTTCTGTGATATGTGAAATCTGGTTTGCATTTTCGTGGATCCTCGATCAGTTCCCCAAATGGTTCCCAATCGATCGTGAAACCTACTTGGATCGTCTGTCCCCTCAGGGCGAACCTAATTTGCTTGCTCCAGTGGACATTTTTGTCAGTACTGTTGATCCGATGAAGGAACCTCCTCTTGTAACAGCTAACACAATCTTATCTATCTTGGCCATGGACTATCCAGTTGATAAGGTTTCATGCTACGTTTCAGATGATGGAGCTTCCATGCTTACCTACGAAGCAATGTCTGAAACTGCAGAATTTGCCAGGAAATGGGTGCCCTTCTGTAAGAAGTTTTCGATAGAACCTCGAGCACCTGAAATGTACTTTTGTGAGAAGATCGATTATCTCAAGGATAAAGTCCAACCAACATTTGTAAAGGAGCGTCGGGCAATGAAGAGAGAATATGAAGAATTCAAGGTCAGGATAAATGCCCAAGTAGCAAAAGCCATAAAAGTTCCCACAGAAGGATGGATAATGCAAGATGGAACACCATGGCCAGGCAACAACACAAAAGATCACCCTGGTATGATCCAAGTCTTTTTGGGTCACAGTGGAGGCCCTGATGCAGAAGGGAATGAACTCCCCCGCTTAGTGTACGTATCTCGTGAGAAAAGACCAGGTTTCCAACATCACAAGAAGGCTGGTGCCATGAATGCCTTGATTCGTGTATCTGCAGTGCTTACAAATGCTCCATTCATGTTGAACTTAGATTGTGATCACTACATAAACAATAGCAAAGCAGCAAGAGAGGCAATGTGTTTCCTTATGGACCCTCAAGTTGGAAAGAAAGTCTGCTATGTACAATTTCCACAAAGATTTGATGGAATAGATAGGCATGATCGTTATGCCAACAGAAATACGATTAACATGCGAGGTTTAGATGGAATTCAGGGTCCTGTATATGTTGGCACAGGGTGTGTTTTCAGGAGACGGGCTTTATATGGTTATGAACCCCCAAAAGGACCGAAGCGCCCAAAAATGGTATGCTGTGACTGTTGTCCATGCTTTGGACGTCGCAAGAAGCTTAAGGGCTCTAAAAGTGGGGTAGATGGAGATGCTGCAGCGATGGAAGATAACAAGGAGCTGCTAATGTCGCAAATGAATTTCGAAAAGAAATTTGGGCAGTCATCAATTTTTGTTACCTCGACTTTGATTGAGAAGGTGGTGTTCCACCCTCCTCGGGTCCAGCGACCCTACTTAAGGAAGCAATTCATGTTATCAGTTGCGGTTATGAAGACAAAACCGAATGGGTTGGGCTGGATTTATGGGTCGATCACAGAAGATATTCTAACAGATTTCAAGATGCATTGTCGTGGCTGGAGATCTATATACTGCATGCCAAAGAGACCTGCATTTAAGGGTACAGCTCCCATTAACTTGTCTGATCGGCTGAACCAGGTGCTTCGGTGGGCACTCGGGTCTATTGAAATCTTTTTCAGCAACCACTGCCCTATTTGGTATGGTTATAAGGGTGGGAAGCTAAAGTGGCTAGAGAGATTTGCATACGTCAACACAACTGTCTACCCCTTCACTTCAATACCACTTCTCGCCTACTGTACCCTCCCTGCGATTTGCCTGCTCACCGATAAGTTCATCATGCCACCGATAAGCACCTTTGCAAGTCTCTACTTCATTGCCTTGTTTCTTTCCATTTTTGCTACGGGTATTCTAGAGCTTAAATGGAGTGGAGTTAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTATTTCAGCTCATCTATTTGCTGTTGTTCAAGGTCTATTGAAGGTTTTGGCTGGAATTGATACTAGCTTCACAGTTACATCCAAGGCAACAGATGACGAAGATTTTGGAGAATTATATGCCTTTAAATGGACCACTTTGCTAATCCCTCCAACAACTATTTTGATCATCAACCTTGTTGGGGTTGTTGCAGGCATCTCAGATGCCATAAACAATGGCTATCAATCATGGGGACCTCTATTTGGGAAGCTTTTCTTTGCCTTCTGGGTGATTGTCCATCTCTACCCGTTCCTTAAGGGTCTGATGGGCCGACAAAACCGCACACCGACTATAGTCGTCATATGGTCCGTGCTGTTGGCTTCAATCTTCTCCTTGCTTTGGGTTCGAATCAATCCATTTGTGATGAAGACAAAGGGACCAGATACCAAGCAATGTGGATTAAATTGCTGA 3162 43.9 MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDEVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGEIQNEGLCNNKFRVFFFLKLSLFGYCEGSPRVEGDDDEEDIDDIEHEFNIDDERNKHSHMAEAILHGKMSYGRGPNDDENAQYGRTELENVELPLSSQGYGDQISSSSLHKRVHPFPASEPGSGRWDEKREEGWKDKMDDWKLQQGNLGPEPDDANDPDMAICLKLLFAELHTATIKEPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSPQGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKVSCYVSDDGASMLTYEAMSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAIKVPTEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGPDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTINMRGLDGIQGPVYVGTGCVFRRRALYGYEPPKGPKRPKMVCCDCCPCFGRRKKLKGSKSGVDGDAAAMEDNKELLMSQMNFEKKFGQSSIFVTSTLIEKVVFHPPRVQRPYLRKQFMLSVAVMKTKPNGLGWIYGSITEDILTDFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPIWYGYKGGKLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPISTFASLYFIALFLSIFATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKVLAGIDTSFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRINPFVMKTKGPDTKQCGLNC 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2192739 2197140 + CmaCh11G004480.1 Cma11g00448 302957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00448 1053 SUPERFAMILY Nucleotide-diphospho-sugar transferases 368 877 IPR029044 -
Cma11g00448 1053 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 93 - -
Cma11g00448 1053 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Cma11g00448 1053 MobiDBLite consensus disorder prediction 188 203 - -
Cma11g00448 1053 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 119 1053 - -
Cma11g00448 1053 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 137 IPR013083 -
Cma11g00448 1053 SUPERFAMILY RING/U-box 21 94 - -
Cma11g00448 1053 MobiDBLite consensus disorder prediction 188 222 - -
Cma11g00448 1053 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 93 - -
Cma11g00448 1053 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Cma11g00448 1053 Pfam Zinc-binding RING-finger 27 93 IPR027934 -
Cma11g00448 1053 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 119 1053 - -
Cma11g00448 1053 Pfam Cellulose synthase 355 1047 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cma11g00448 1053 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 472 642 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00448 Cma-Chr11:2192739 Cma07g01319 Cma-Chr7:7466028 0 dispersed
Cma10g00457 Cma-Chr10:2078387 Cma11g00448 Cma-Chr11:2192739 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00448 K10999 - csv:101214842 1883.61