Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00450 | ATGCAGCAAGCTGATCGGACGGTTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTTTGAGAATTCATCCTTCTCTTCCTCATCTTCTTTTACCTTCGGTTCATTTTCCTCTGATCTTTCCACCCTCCCGCCCCATGGCGGACCTTCCGCTTCATTGTCTGTGAATGCTGAAGATTCACGGTTTGAGGGTCGTGAGTGTGTTCGATATACCCGAGATCAGCTTTTGTGCCTTCGTGTGCAGCTTCGAGAGGCTGTGGAAGTTCCAGATGATATACTAAAACTTAAACGGGATCTTGAAGTGGAAATTTTAGGCGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAACCTAATCAGTCTCAGAATCGCTATTCTGAGCCAGACAGTCGTGACTGGCATGGCCGTTCTGCCCAATTCTCTGCTTCTGGAGAGGAGAGGTCCAAGGAAACAAATCGAGATAGAGATGTTGGTGGTCATTTTGATTCTAGACAGCAAGACGCAAACCAATTCAATCGTCAAGAGCATTGGACCAGGACCACTTCTAACCAAGGGGGAGGACTTCCCGCTTTAATCAAAGCTGAGGTTCCATGGTCAGCTAGGAGAGGAAATCTTTCTGAAAAGGATCGTGTCTTGAAGACTGTAAAGGGGATATTGAACAAGCTAACACCAGAAAAGTTCGATCTCCTCAAGGGTCAGCTAATGGACTCCGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTGATTTTTGACAAGGCTGTTCTCGAGCCCACATTTTGCCCCATGTATGCCCAATTGTGTTCTGATCTGAATCAGAAGCTACCTCAATTTCCCTCCGATGAACCTGGTGGAAGGGAAATTAATTTTAAACGAGTCCTCTTAAATATCTGTCAGGAGGCTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGGTTAGGCAGATGATTTCCCCTGAGCAAGAGAGCGAGCGCAGAGATAAAGAAAGACTGATCAAACTTCGTACTCTTGGAAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTGCCTGAGAAGATTGTCCACCACATCGTGCAGGAACTTTTAGGACCAGATAACAAAATCTGTCCTGCTGAAGAAAACGTGGAGGCAATCTGTCAGTTCTTCAACACCATAGGTAAGCAGCTAGACGAGAACACAAAATCGCGGCGTATAAATGACATTTACTTTGGCCGATTGAAAGAATTGACTACACTCCCTCAGTTGGCTCCACGTTTGAAGTTCATGGTCCGCGATGTTCTTGATTTGCGAGCTAACAATTGGGTACCTAGGCGTGAAGAGGTTAAAGCCAAAACTATTACTGAAATACATTCAGAGGCAGAAAAAAATCTGGGACTACGTCCTGGTACTACTATCAATATCAGAAATAGTCGTGGTGTTGTGTCCGGTTCTCCTGGGAACACCAGCCCTGTGGGCTTTCCTATCAATCGACCTGGTTTGGGGGGTATGATGCCGGGCATGCCAGGAACCAGGAAGATGCCTGGTATGCCAGGAATGGATAATGACAATTGGGAGGTTCCTAGGGCCCGTACTGTACCTAGGGGGGCAAACGGATCTGGTATGCAGCCTTCTGGACGTGGCCAGACACAGTTGATTGGCAAAGCATCAACCTTGAATGCGAGGCTACTACCCCAGAGTTCTGGTGGCCTCATTAGTAACAAGATTAGTGCTCAATTGCAGGGTGCAGGAGCATCTACTACTCGTCCTATTAACTTCGGTCAAGGGTTGGGTCATAAACCTATTACGGCAGCAATGGTCCTTCCACCTGCTGAGAGATCACAGGTTCCAGCTGCATCTTTAAAACAAGTTGATCTCAAAAAGAAAACTCTCTCTCTTCTAGAAGAATATTTCAGTATCCGGATTTTGGATGAGGCTTTACAGTGCGTGGAAGAACTCATGTCACCAGCTTACCATCCTGAAGTTGTAAAAGAAACCATTTCTTTAGCCCTAGAGAAAAGCCCACCCTGTGTTGAAGCAGTCGTAAAGTTTCTATCCTATTTACTCTCCACGAAGGTTTTTACTGCTGGAGACATTGAGACTGGATGTTTGCTATATGCTTCTGTGCTTGACGACGCAGGCATTGATTTACCAAAAGCCCCAATGAATTTCGGAGTGATAATTGGGAAACTTGTTATATCTGGTAGTTTGGATTTTCAGGTGGTGAAGGAGCTCCTTAAGAAGGTGGAAGATGACAGGTTCAGGAAAGACATATTTGATGCTGTCTTGCAGACGCTAAGTTCTGATGTGTCTGGACAAGGATTATTGGATTCATTGGCATCCGAAATCGAGGCCTGTCGAAGTCTGGCATGTTAA | 2379 | 45.86 | MQQADRTVLSLRPGGGRPRLLGPRFENSSFSSSSSFTFGSFSSDLSTLPPHGGPSASLSVNAEDSRFEGRECVRYTRDQLLCLRVQLREAVEVPDDILKLKRDLEVEILGEEQSWSRGESNQPNQSQNRYSEPDSRDWHGRSAQFSASGEERSKETNRDRDVGGHFDSRQQDANQFNRQEHWTRTTSNQGGGLPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDLLKGQLMDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREINFKRVLLNICQEAFEGADKLREEVRQMISPEQESERRDKERLIKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKICPAEENVEAICQFFNTIGKQLDENTKSRRINDIYFGRLKELTTLPQLAPRLKFMVRDVLDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGTTINIRNSRGVVSGSPGNTSPVGFPINRPGLGGMMPGMPGTRKMPGMPGMDNDNWEVPRARTVPRGANGSGMQPSGRGQTQLIGKASTLNARLLPQSSGGLISNKISAQLQGAGASTTRPINFGQGLGHKPITAAMVLPPAERSQVPAASLKQVDLKKKTLSLLEEYFSIRILDEALQCVEELMSPAYHPEVVKETISLALEKSPPCVEAVVKFLSYLLSTKVFTAGDIETGCLLYASVLDDAGIDLPKAPMNFGVIIGKLVISGSLDFQVVKELLKKVEDDRFRKDIFDAVLQTLSSDVSGQGLLDSLASEIEACRSLAC | 792 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2201267 | 2208179 | + | CmaCh11G004500.1 | Cma11g00450 | 302959 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00450 | 792 | MobiDBLite | consensus disorder prediction | 114 | 131 | - | - | |
Cma11g00450 | 792 | MobiDBLite | consensus disorder prediction | 470 | 501 | - | - | |
Cma11g00450 | 792 | Pfam | MA3 domain | 627 | 739 | IPR003891 | - | |
Cma11g00450 | 792 | SMART | if4_15 | 217 | 442 | IPR003890 | GO:0003723|GO:0005515 | |
Cma11g00450 | 792 | MobiDBLite | consensus disorder prediction | 471 | 493 | - | - | |
Cma11g00450 | 792 | SUPERFAMILY | ARM repeat | 210 | 445 | IPR016024 | - | |
Cma11g00450 | 792 | MobiDBLite | consensus disorder prediction | 113 | 194 | - | - | |
Cma11g00450 | 792 | SMART | ma3_7 | 627 | 739 | IPR003891 | - | |
Cma11g00450 | 792 | MobiDBLite | consensus disorder prediction | 168 | 192 | - | - | |
Cma11g00450 | 792 | MobiDBLite | consensus disorder prediction | 151 | 167 | - | - | |
Cma11g00450 | 792 | Gene3D | - | 620 | 784 | - | - | |
Cma11g00450 | 792 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | 3 | 790 | IPR045208 | GO:0003743 | |
Cma11g00450 | 792 | PANTHER | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 | 3 | 790 | - | - | |
Cma11g00450 | 792 | Pfam | MIF4G domain | 217 | 442 | IPR003890 | GO:0003723|GO:0005515 | |
Cma11g00450 | 792 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cma11g00450 | 792 | SUPERFAMILY | ARM repeat | 622 | 781 | IPR016024 | - | |
Cma11g00450 | 792 | Gene3D | - | 208 | 443 | - | - | |
Cma11g00450 | 792 | ProSiteProfiles | MI domain profile. | 626 | 748 | IPR003891 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00459 | Cma11g00450 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g01015 | Cma-Chr8:6361504 | Cma11g00450 | Cma-Chr11:2201267 | 1.21E-65 | dispersed | |
Cma11g00450 | Cma-Chr11:2201267 | Cma17g00068 | Cma-Chr17:318062 | 1.34E-59 | dispersed | |
Cma01g01675 | Cma-Chr1:11433259 | Cma11g00450 | Cma-Chr11:2201267 | 0 | wgd | |
Cma10g00459 | Cma-Chr10:2086085 | Cma11g00450 | Cma-Chr11:2201267 | 0 | wgd | |
Cma11g00450 | Cma-Chr11:2201267 | Cma09g00401 | Cma-Chr9:1700705 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00450 | K03260 | - | csv:101207520 | 1260.74 |