Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00450 ATGCAGCAAGCTGATCGGACGGTTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTTTGAGAATTCATCCTTCTCTTCCTCATCTTCTTTTACCTTCGGTTCATTTTCCTCTGATCTTTCCACCCTCCCGCCCCATGGCGGACCTTCCGCTTCATTGTCTGTGAATGCTGAAGATTCACGGTTTGAGGGTCGTGAGTGTGTTCGATATACCCGAGATCAGCTTTTGTGCCTTCGTGTGCAGCTTCGAGAGGCTGTGGAAGTTCCAGATGATATACTAAAACTTAAACGGGATCTTGAAGTGGAAATTTTAGGCGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAACCTAATCAGTCTCAGAATCGCTATTCTGAGCCAGACAGTCGTGACTGGCATGGCCGTTCTGCCCAATTCTCTGCTTCTGGAGAGGAGAGGTCCAAGGAAACAAATCGAGATAGAGATGTTGGTGGTCATTTTGATTCTAGACAGCAAGACGCAAACCAATTCAATCGTCAAGAGCATTGGACCAGGACCACTTCTAACCAAGGGGGAGGACTTCCCGCTTTAATCAAAGCTGAGGTTCCATGGTCAGCTAGGAGAGGAAATCTTTCTGAAAAGGATCGTGTCTTGAAGACTGTAAAGGGGATATTGAACAAGCTAACACCAGAAAAGTTCGATCTCCTCAAGGGTCAGCTAATGGACTCCGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTGATTTTTGACAAGGCTGTTCTCGAGCCCACATTTTGCCCCATGTATGCCCAATTGTGTTCTGATCTGAATCAGAAGCTACCTCAATTTCCCTCCGATGAACCTGGTGGAAGGGAAATTAATTTTAAACGAGTCCTCTTAAATATCTGTCAGGAGGCTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGGTTAGGCAGATGATTTCCCCTGAGCAAGAGAGCGAGCGCAGAGATAAAGAAAGACTGATCAAACTTCGTACTCTTGGAAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTGCCTGAGAAGATTGTCCACCACATCGTGCAGGAACTTTTAGGACCAGATAACAAAATCTGTCCTGCTGAAGAAAACGTGGAGGCAATCTGTCAGTTCTTCAACACCATAGGTAAGCAGCTAGACGAGAACACAAAATCGCGGCGTATAAATGACATTTACTTTGGCCGATTGAAAGAATTGACTACACTCCCTCAGTTGGCTCCACGTTTGAAGTTCATGGTCCGCGATGTTCTTGATTTGCGAGCTAACAATTGGGTACCTAGGCGTGAAGAGGTTAAAGCCAAAACTATTACTGAAATACATTCAGAGGCAGAAAAAAATCTGGGACTACGTCCTGGTACTACTATCAATATCAGAAATAGTCGTGGTGTTGTGTCCGGTTCTCCTGGGAACACCAGCCCTGTGGGCTTTCCTATCAATCGACCTGGTTTGGGGGGTATGATGCCGGGCATGCCAGGAACCAGGAAGATGCCTGGTATGCCAGGAATGGATAATGACAATTGGGAGGTTCCTAGGGCCCGTACTGTACCTAGGGGGGCAAACGGATCTGGTATGCAGCCTTCTGGACGTGGCCAGACACAGTTGATTGGCAAAGCATCAACCTTGAATGCGAGGCTACTACCCCAGAGTTCTGGTGGCCTCATTAGTAACAAGATTAGTGCTCAATTGCAGGGTGCAGGAGCATCTACTACTCGTCCTATTAACTTCGGTCAAGGGTTGGGTCATAAACCTATTACGGCAGCAATGGTCCTTCCACCTGCTGAGAGATCACAGGTTCCAGCTGCATCTTTAAAACAAGTTGATCTCAAAAAGAAAACTCTCTCTCTTCTAGAAGAATATTTCAGTATCCGGATTTTGGATGAGGCTTTACAGTGCGTGGAAGAACTCATGTCACCAGCTTACCATCCTGAAGTTGTAAAAGAAACCATTTCTTTAGCCCTAGAGAAAAGCCCACCCTGTGTTGAAGCAGTCGTAAAGTTTCTATCCTATTTACTCTCCACGAAGGTTTTTACTGCTGGAGACATTGAGACTGGATGTTTGCTATATGCTTCTGTGCTTGACGACGCAGGCATTGATTTACCAAAAGCCCCAATGAATTTCGGAGTGATAATTGGGAAACTTGTTATATCTGGTAGTTTGGATTTTCAGGTGGTGAAGGAGCTCCTTAAGAAGGTGGAAGATGACAGGTTCAGGAAAGACATATTTGATGCTGTCTTGCAGACGCTAAGTTCTGATGTGTCTGGACAAGGATTATTGGATTCATTGGCATCCGAAATCGAGGCCTGTCGAAGTCTGGCATGTTAA 2379 45.86 MQQADRTVLSLRPGGGRPRLLGPRFENSSFSSSSSFTFGSFSSDLSTLPPHGGPSASLSVNAEDSRFEGRECVRYTRDQLLCLRVQLREAVEVPDDILKLKRDLEVEILGEEQSWSRGESNQPNQSQNRYSEPDSRDWHGRSAQFSASGEERSKETNRDRDVGGHFDSRQQDANQFNRQEHWTRTTSNQGGGLPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDLLKGQLMDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREINFKRVLLNICQEAFEGADKLREEVRQMISPEQESERRDKERLIKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKICPAEENVEAICQFFNTIGKQLDENTKSRRINDIYFGRLKELTTLPQLAPRLKFMVRDVLDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGTTINIRNSRGVVSGSPGNTSPVGFPINRPGLGGMMPGMPGTRKMPGMPGMDNDNWEVPRARTVPRGANGSGMQPSGRGQTQLIGKASTLNARLLPQSSGGLISNKISAQLQGAGASTTRPINFGQGLGHKPITAAMVLPPAERSQVPAASLKQVDLKKKTLSLLEEYFSIRILDEALQCVEELMSPAYHPEVVKETISLALEKSPPCVEAVVKFLSYLLSTKVFTAGDIETGCLLYASVLDDAGIDLPKAPMNFGVIIGKLVISGSLDFQVVKELLKKVEDDRFRKDIFDAVLQTLSSDVSGQGLLDSLASEIEACRSLAC 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2201267 2208179 + CmaCh11G004500.1 Cma11g00450 302959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00450 792 MobiDBLite consensus disorder prediction 114 131 - -
Cma11g00450 792 MobiDBLite consensus disorder prediction 470 501 - -
Cma11g00450 792 Pfam MA3 domain 627 739 IPR003891 -
Cma11g00450 792 SMART if4_15 217 442 IPR003890 GO:0003723|GO:0005515
Cma11g00450 792 MobiDBLite consensus disorder prediction 471 493 - -
Cma11g00450 792 SUPERFAMILY ARM repeat 210 445 IPR016024 -
Cma11g00450 792 MobiDBLite consensus disorder prediction 113 194 - -
Cma11g00450 792 SMART ma3_7 627 739 IPR003891 -
Cma11g00450 792 MobiDBLite consensus disorder prediction 168 192 - -
Cma11g00450 792 MobiDBLite consensus disorder prediction 151 167 - -
Cma11g00450 792 Gene3D - 620 784 - -
Cma11g00450 792 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 790 IPR045208 GO:0003743
Cma11g00450 792 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 790 - -
Cma11g00450 792 Pfam MIF4G domain 217 442 IPR003890 GO:0003723|GO:0005515
Cma11g00450 792 MobiDBLite consensus disorder prediction 1 32 - -
Cma11g00450 792 SUPERFAMILY ARM repeat 622 781 IPR016024 -
Cma11g00450 792 Gene3D - 208 443 - -
Cma11g00450 792 ProSiteProfiles MI domain profile. 626 748 IPR003891 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00459 Cma11g00450 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01015 Cma-Chr8:6361504 Cma11g00450 Cma-Chr11:2201267 1.21E-65 dispersed
Cma11g00450 Cma-Chr11:2201267 Cma17g00068 Cma-Chr17:318062 1.34E-59 dispersed
Cma01g01675 Cma-Chr1:11433259 Cma11g00450 Cma-Chr11:2201267 0 wgd
Cma10g00459 Cma-Chr10:2086085 Cma11g00450 Cma-Chr11:2201267 0 wgd
Cma11g00450 Cma-Chr11:2201267 Cma09g00401 Cma-Chr9:1700705 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00450 K03260 - csv:101207520 1260.74