Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00458 ATGGCGGAGCCAGAAGGGTTTGATTCTAATCAACTCGGAAGCTCGAAGGCTTCTGCAGGGCAACAGGATGACGAGGAAGAAGAAATGGAAGATTCAGAGAATGAATCAGAGGTGGAGTTGGAGGAACATAAACTGAGTGAGTTGAGGACAGGTTCGTCGGTTACTGAAGCTGCAGTGAAGGGGTCTTGCTCTCAAACCCTAGCGCCGCCTTCTGCGAATCAGTCCTCGGAGAACGGTCGGTCTGATGGCTTGCCTGACAATTCTGCTGCCGAGTCACTCGAAGGAGTTGAATTGAAGCATCAAGCTCCATCTGCCAGCAATGTTGAAGCAATCCAGACAGATCAGGTACAAGAACAAAGCCAACTTCAGATAATAGTATATAACGGACCTGATTCAGAACAATCACCAACTTCAGTTACCCAGTCTATCTCATCCTCTGCAAGTCCAAGTTTATCCGAATATAAACTGGCACCTAAGAAGGTCCATAAAGAATGTAAGCCAGAACCAAGCCAGAAGAATTCTTCCGACCGTAAAACTGTGTTCTCTGTTCCCAATGTTAGGACACCTGCTTCTGATGGTTACAATTGGAGGAAATATGGTCAGAAGCAAGTGAAGATTCCAAAGGGTTCACGTAGCTATTACAAGTGTACATATTCTGGATGCTGTGCTAAGAAGATTGAATGTTGTGATCACTCAGGCCTTGTAACAGAGGTTGTTTACAAGAGCCAACATAGCCATGATCCTCCTAGGAAGATTAGCAACCCCAAGGAAAGTATGCTTGTGCCTTATGTTGAACCTGTGGTTAAGAAAATCATGACAGAACATTCTGTAAGAATAATTAACGATTCAGATCCTCCTATATCTTCAAAAGAACCGTTACGGGAAACAGCTTCAGTCGTTGAAAGAAAACGACAGTACTCGAATGACTCTGACGGAAATGATGAATCTAAAATCAAGAATGAGAATGACAACGAATACGAAACAAAACAAAAAGTTAAGAAGAGCAGTGGGGGATATTCAGGCACTCCCTTAAAACCTGGAAAGAAGCCCAAGTTTGTGGTACATGCAGCGGGTGATGTGGGGATCTCAGGTGACGGATACAGATGGCGTAAGTATGGTCAGAAAATGGTGAAAGGAAATCCTCATCCTAGGAACTACTACCGATGTACCTCTGCTGGGTGTCCAGTCCGTAAGCATATCGAATCAGCTGTTGAAAATCCAAGCGTAGTGATTATAACATACAAGGGAGTTCATGATCACGACATGCCAGTACCGAAGAAACGACACGGTCCTCCTAGTGCACCTCTTGTAGCTGCTGCAGCTCCTGCCTCCATGGGCAATATGCAACCAAAGAAAACAGACGCAGTTCAGAGCCAAATTTCTTCAACACAATGGTCTGTGGATGCTGAAGGAGAGTTGACTGGTGAGGCCTTGGATCTTGGAGGTGAGAAAGCAATGGAATCTGCCCGAACACTTTTGAGCATTGGATTTGAAATCAAGCCTTGCTGA 1509 44.86 MAEPEGFDSNQLGSSKASAGQQDDEEEEMEDSENESEVELEEHKLSELRTGSSVTEAAVKGSCSQTLAPPSANQSSENGRSDGLPDNSAAESLEGVELKHQAPSASNVEAIQTDQVQEQSQLQIIVYNGPDSEQSPTSVTQSISSSASPSLSEYKLAPKKVHKECKPEPSQKNSSDRKTVFSVPNVRTPASDGYNWRKYGQKQVKIPKGSRSYYKCTYSGCCAKKIECCDHSGLVTEVVYKSQHSHDPPRKISNPKESMLVPYVEPVVKKIMTEHSVRIINDSDPPISSKEPLRETASVVERKRQYSNDSDGNDESKIKNENDNEYETKQKVKKSSGGYSGTPLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIESAVENPSVVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMGNMQPKKTDAVQSQISSTQWSVDAEGELTGEALDLGGEKAMESARTLLSIGFEIKPC 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2235976 2240549 - CmaCh11G004580.1 Cma11g00458 302967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00458 502 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 19 500 IPR044810 GO:0003700
Cma11g00458 502 Gene3D WRKY domain 174 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma11g00458 502 Gene3D WRKY domain 348 424 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma11g00458 502 MobiDBLite consensus disorder prediction 295 332 - -
Cma11g00458 502 SUPERFAMILY WRKY DNA-binding domain 359 423 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma11g00458 502 MobiDBLite consensus disorder prediction 105 152 - -
Cma11g00458 502 ProSiteProfiles WRKY domain profile. 191 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g00458 502 MobiDBLite consensus disorder prediction 50 85 - -
Cma11g00458 502 SUPERFAMILY WRKY DNA-binding domain 188 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma11g00458 502 MobiDBLite consensus disorder prediction 156 173 - -
Cma11g00458 502 SMART WRKY_cls 190 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g00458 502 SMART WRKY_cls 363 422 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g00458 502 ProSiteProfiles WRKY domain profile. 358 423 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g00458 502 MobiDBLite consensus disorder prediction 23 37 - -
Cma11g00458 502 MobiDBLite consensus disorder prediction 1 186 - -
Cma11g00458 502 MobiDBLite consensus disorder prediction 280 350 - -
Cma11g00458 502 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 19 500 - -
Cma11g00458 502 Coils Coil 22 42 - -
Cma11g00458 502 Pfam WRKY DNA -binding domain 192 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g00458 502 Pfam WRKY DNA -binding domain 365 420 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00467 Cma11g00458 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00458 Cma-Chr11:2235976 Cma14g00032 Cma-Chr14:149735 1.30E-16 dispersed
Cma10g00467 Cma-Chr10:2113706 Cma11g00458 Cma-Chr11:2235976 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35812 PF03106 WRKY 3.70E-24 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00458 - - bhj:120071353 766.148