Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00460 | ATGTCGGACGAGGAACACCACTTCGATTCTAAGGCCGACGCCGGAGCGTCCAAGACTTTCCCTCAGCAAGCTGGTACCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGGCCCTGCAAGGTTGTTGAAGTTTCCACTTCAAAAACTGGAAAGCATGGACATGCGAAGTGTCACTTTGTGGCAATTGACATATTCAATGGAAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTTAATCGTACTGACTATCAGCTGATTGATATATCTGAGGATGGTTTCGATGACCTGAGGCTTCCCACCGATGATAATCTGCTTACGCAGCTTAAAGATGGGTTCGCTGAAGGAAAAGATCTTGTTCTAACGGTTATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATCGGTCCTAAAGGCTAA | 450 | 45.33 | MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFDDLRLPTDDNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKG | 149 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2241935 | 2244824 | - | CmaCh11G004600.1 | Cma11g00460 | 302969 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00460 | 149 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | IPR019769 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Cma11g00460 | 149 | Gene3D | - | 1 | 85 | IPR014722 | - | |
Cma11g00460 | 149 | Gene3D | - | 86 | 147 | IPR012340 | - | |
Cma11g00460 | 149 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 1 | 145 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Cma11g00460 | 149 | PANTHER | BNAA07G09420D PROTEIN | 1 | 145 | - | - | |
Cma11g00460 | 149 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cma11g00460 | 149 | PIRSF | Transl_init_eIF5A | 1 | 146 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Cma11g00460 | 149 | SUPERFAMILY | Translation proteins SH3-like domain | 15 | 93 | IPR008991 | - | |
Cma11g00460 | 149 | TIGRFAM | eIF_5A: translation elongation factor IF5A | 18 | 142 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Cma11g00460 | 149 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 143 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Cma11g00460 | 149 | SUPERFAMILY | Nucleic acid-binding proteins | 86 | 145 | IPR012340 | - | |
Cma11g00460 | 149 | SMART | eIF_5a_2 | 85 | 143 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g00469 | Cma-Chr10:2120321 | Cma11g00460 | Cma-Chr11:2241935 | 4.29E-32 | dispersed | |
Cma11g00460 | Cma-Chr11:2241935 | Cma18g01122 | Cma-Chr18:9117309 | 3.21E-99 | dispersed | |
Cma01g01664 | Cma-Chr1:11385332 | Cma11g00460 | Cma-Chr11:2241935 | 5.83E-101 | wgd | |
Cma10g00468 | Cma-Chr10:2119507 | Cma11g00460 | Cma-Chr11:2241935 | 2.94E-23 | wgd | |
Cma11g00460 | Cma-Chr11:2241935 | Cma09g00411 | Cma-Chr9:1742982 | 7.47E-100 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00460 | K03263 | - | csv:101210204 | 296.204 |