Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00460 ATGTCGGACGAGGAACACCACTTCGATTCTAAGGCCGACGCCGGAGCGTCCAAGACTTTCCCTCAGCAAGCTGGTACCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGGCCCTGCAAGGTTGTTGAAGTTTCCACTTCAAAAACTGGAAAGCATGGACATGCGAAGTGTCACTTTGTGGCAATTGACATATTCAATGGAAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTTAATCGTACTGACTATCAGCTGATTGATATATCTGAGGATGGTTTCGATGACCTGAGGCTTCCCACCGATGATAATCTGCTTACGCAGCTTAAAGATGGGTTCGCTGAAGGAAAAGATCTTGTTCTAACGGTTATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATCGGTCCTAAAGGCTAA 450 45.33 MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFDDLRLPTDDNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKG 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2241935 2244824 - CmaCh11G004600.1 Cma11g00460 302969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00460 149 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cma11g00460 149 Gene3D - 1 85 IPR014722 -
Cma11g00460 149 Gene3D - 86 147 IPR012340 -
Cma11g00460 149 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 145 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cma11g00460 149 PANTHER BNAA07G09420D PROTEIN 1 145 - -
Cma11g00460 149 MobiDBLite consensus disorder prediction 1 21 - -
Cma11g00460 149 PIRSF Transl_init_eIF5A 1 146 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cma11g00460 149 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Cma11g00460 149 TIGRFAM eIF_5A: translation elongation factor IF5A 18 142 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cma11g00460 149 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 143 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cma11g00460 149 SUPERFAMILY Nucleic acid-binding proteins 86 145 IPR012340 -
Cma11g00460 149 SMART eIF_5a_2 85 143 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00469 Cma-Chr10:2120321 Cma11g00460 Cma-Chr11:2241935 4.29E-32 dispersed
Cma11g00460 Cma-Chr11:2241935 Cma18g01122 Cma-Chr18:9117309 3.21E-99 dispersed
Cma01g01664 Cma-Chr1:11385332 Cma11g00460 Cma-Chr11:2241935 5.83E-101 wgd
Cma10g00468 Cma-Chr10:2119507 Cma11g00460 Cma-Chr11:2241935 2.94E-23 wgd
Cma11g00460 Cma-Chr11:2241935 Cma09g00411 Cma-Chr9:1742982 7.47E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00460 K03263 - csv:101210204 296.204