Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00467 ATGGCGTTGTTGCGCAAATTGTTCTTCCGGAAGCCGCCCGATGGTCTTCTCGAGATCTGTGAAAGAGTTTATGTTTTTGATTGCTGTTTTACCACAGATTCATGGAAGGAAGAGAATTATGAAGTTTACTTGGGTGGAATAGTGGCTCAACTCCGTGAGCATTTAGTAGACGCATCTTTCTTGGTATTCAATTTTAGGATCTTAGAGATGCAAAGTCAGGTGGGCGATATCTTATCTAAGTTTGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCAGTTCTGACGATGGAAGTGCTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAACGTTTTGTTAATGCACTGTGAACGTGGTGGTTGGCCAGTTCTAGCGTTCATGCTTTCGGCTCTCTTGATTTATAGGAAGCAATATAGTGGGGAGCAAAGGACATTGGACATGGTTTATAGGCAGGCGCCTCGGGAGCTTTTGCATTTTTTTTCTCCTATGAATCCAGTTCCTTCTCAATTAAGGTATCTGCAATATGTCGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTGTGGACAGAGGTCTCACTTTGGACTGTATCATTTTGAGATTTATTCCAAATTTTGATGGAGAGGGTGGTTGCCGACCAATATTTCGGATATATGGACAAGATCCACTACTTGTCAGCGATCGAACTCCTAAAGTTCTGTATTCAACTCCAAAAAGAAGCAAAAATCTCCGAACTTACAAACAGGCAGAAGCAGAACTGGTTAAGATTGATGTAAATTGCCATATTCAAGGTGATGTTGTTCTTGAGTGCATCTCCTTGCATGACAACATGGAATTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGTGAAGAGATCGACACTTTGTGGAATGGCAAAGATAGATTTCCAAAGGACTTTCGAGCAGAGATTCTTTTCTCTGAGATGGATGCTGCAACATGTCCTGTTGCAAATGATGTAGTTTGCTTTGAGGAGGAAGGTCTCCCCATGGAAGCATTTGCTAAAGTGCAAGAGATCTTTAGTCATGTGGATTGGTTAGACCCCAAAGCAGATGTTGCGCTCAATGTGCTCCATCAGATGAATGCCTTAAGCATAGCCCAAGAGAAGTCAGAAAGTAGTTCTCCTCGGAGTACGCCAGTTAGTCCTTTATTTCAGAGTACAAGTCCCAGAAAACTTTCGCTGAAGAAATTCACAATGGATAACAAAACAAAAATCCTAGAGAAGGAACAATCTAGTCCAACATCTAAATTTTCACTGTATGCTGCTAAATCTAATTCAGTATTCCAACAGGTGCCTCAATCTTCGGAGTGTTTCCCACTCGACATTTTGCAAGATTCGCCAATTTCAGAGAGTAGCGATAGGACCTCATTCAGTGCTTCGGTTGGAAGCCACTCAGTTTTTGATTCTGAAGGAGAAACAGAGGTTTCTCATCTGAAAACTGTATCTTCATCTTTTCCGAATGCAGCATTGGCTGTTTCTCTTGCACCCGAGTCTCTCCAGACTAAGAGTCCCCTAACAGAAAGAATAGTCCCACCACCTCCTCCTCTCCCCCAACTTTCCACGAATAGTTCTGCTGCTAATTCTCTAACTTATCCTTCCGCTCCTCCAACTGCCTTACCACTTCGGTCTAATAACTTTTCAACTCTAAGACCAGATAAATTCTCACTCACTGAGGTAGTAGAAAACTATTCGAAGGATCAAAGGCAGTTATCAACCGTTAGCCCCCCACTTTCTGTAACCTCAATACAGTCATCTCCACTGCCTCCTTCTACACCTCCTTTGAAGGATACCATAGCAGCTAGAGTTAAAGCTTCTCTGCCACCACCCCCTCCTTTTTCTTCAACATTAGCTTCCCATCCTGCAAATGCATCCTTTTTGCCTCAACCACCACCACCTCCTTCTCCTCCTTCAACATCCACTGTTAGTCGTAAAATTTCATCTCCAATCCCTTCACCACCACCACCTCCTCCTCCAATGGACATTACGGATCCTAAAATTTTCTCTCCCGTGCCTCCACCACCACCGCCTCCTCCTCTGACATCCAAACAGGTTGAAAGTACTTCAACATCTCCATTTGTTACTCCTCCACCACCACCACCTTTTCCTATGACGTCCAGCCAGGTTGGAAGTATTTCTACATCTTTGTCTATTCCTCCACCGCCGCCACCTCTTCCGTCCAGACAGGATGGAAATACTTCAACATCTCCACCTGTTCCTCCTCCACCACCACCTGCTACTACCAAGGGCTCCTCCCCACCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGGGGGACTTCAAAATCAGGTGAAGTGTTTCCTGGTTCTCCTTTGTCTTGGTCCTCTCTAGGGCCACCATGTATTTCTCCATCAACAAAGGGACGAAGTTTGTCACGCACTATAAATTCAAGAGCACATATAACTAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCGAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCTCAAAAAACTGGTGAAGCTGCCAGGGCACCAGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCTGCAGTTCCTGCTTCTGATCAGAACCGGAAGTCGGGTGGACGTGGTTCTGTTGGGAATAAACCCGAAAAAGTACAACTGATTGATCACAGGCGAGCTTACAATTGTGAAATCATGCTTTCAAAGGTCAAGGCACCTTTGACTGATTTAATGAGTTCTGTGCTTGACCTCGAAGATTCAGCACTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGCCCAACAAAAGAGGAAATGGATTTACTCAAGGGCTACACTGGAGAAAAGGAGATGCTTGGAAAATGTGAACAGTTCTTCTTAGAGTTGATGCAAGTACCTCGTGTAGAATCTAAGCTTCGAGTTTTCTCATTTAAAATACAGTTCATCTCTCAGATCACTGACCTCAAGAAAAGCCTGAACTTTGTCAACTCTGCAGCAGAAGAGATAAAAAGTTCAGTCAAGTTGAAGAGAGTCATGCAGACAATACTATCACTAGGAAATGCTTTAAATCAGGGAACGGCGAGGGGCTCTGCTATAGGATTTAGGCTGGATAGCCTTCTTAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGATAAACTGCCAGAAGTTCTGGATTTTTCCAACGATCTTCCAAGCTTGGAGCCTGCATCAAAGGAACAATTAAAGGTTTTGGCAGAGGAGATGCAATCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACGTCTGAAAATGATGGCCCTATATCCAATAATTTCCGAACGGTTTTAAAGGAGTTCCTTCGTTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCACTGTACTCTAGCGTGGGTAGAAGTGTAGATTCTTTGATTCTTTACTTTGGAGAAGATCCAGCTCGCTGCCCCTTTGAGCAAGTCATATCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCCCACGAGGAGAACTGCAAGCAGATAGAGCTGGAAATGAAGAAAGCAACTGAAAGCGAAAAATCAAAGACAGGGCACATGCGTAAGAGGTCAAGAACAAAACAGTTATCACACTCCCAGATCGAGATTGGCAATGTGAAGTAA 3765 43.45 MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDSWKEENYEVYLGGIVAQLREHLVDASFLVFNFRILEMQSQVGDILSKFDMTIMDYPQQYEGCPVLTMEVLHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLHFFSPMNPVPSQLRYLQYVARRNVALEWPPVDRGLTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNLRTYKQAEAELVKIDVNCHIQGDVVLECISLHDNMEFEEMMFRAMFNTAFIRSNILILNREEIDTLWNGKDRFPKDFRAEILFSEMDAATCPVANDVVCFEEEGLPMEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALSIAQEKSESSSPRSTPVSPLFQSTSPRKLSLKKFTMDNKTKILEKEQSSPTSKFSLYAAKSNSVFQQVPQSSECFPLDILQDSPISESSDRTSFSASVGSHSVFDSEGETEVSHLKTVSSSFPNAALAVSLAPESLQTKSPLTERIVPPPPPLPQLSTNSSAANSLTYPSAPPTALPLRSNNFSTLRPDKFSLTEVVENYSKDQRQLSTVSPPLSVTSIQSSPLPPSTPPLKDTIAARVKASLPPPPPFSSTLASHPANASFLPQPPPPPSPPSTSTVSRKISSPIPSPPPPPPPMDITDPKIFSPVPPPPPPPPLTSKQVESTSTSPFVTPPPPPPFPMTSSQVGSISTSLSIPPPPPPLPSRQDGNTSTSPPVPPPPPPATTKGSSPPVPSAPPPPTLSGRGTSKSGEVFPGSPLSWSSLGPPCISPSTKGRSLSRTINSRAHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPASDQNRKSGGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKAPLTDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKEMLGKCEQFFLELMQVPRVESKLRVFSFKIQFISQITDLKKSLNFVNSAAEEIKSSVKLKRVMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSNDLPSLEPASKEQLKVLAEEMQSISKGLEKVVQELSTSENDGPISNNFRTVLKEFLRFAEAEVRTLASLYSSVGRSVDSLILYFGEDPARCPFEQVISTLCNFVRMFNRAHEENCKQIELEMKKATESEKSKTGHMRKRSRTKQLSHSQIEIGNVK 1254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2260206 2272607 + CmaCh11G004670.1 Cma11g00467 302976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00467 1254 MobiDBLite consensus disorder prediction 676 710 - -
Cma11g00467 1254 ProSiteProfiles Formin homology-2 (FH2) domain profile. 832 1231 IPR015425 -
Cma11g00467 1254 SMART it6_source 832 1252 IPR015425 -
Cma11g00467 1254 Pfam C2 domain of PTEN tumour-suppressor protein 202 337 IPR014020 -
Cma11g00467 1254 Pfam Formin Homology 2 Domain 839 1206 IPR015425 -
Cma11g00467 1254 PANTHER FORMIN-J 1 1235 - -
Cma11g00467 1254 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 202 338 IPR035892 -
Cma11g00467 1254 SUPERFAMILY Formin homology 2 domain (FH2 domain) 747 1222 - -
Cma11g00467 1254 Gene3D Protein tyrosine phosphatase superfamily 15 197 IPR029021 -
Cma11g00467 1254 MobiDBLite consensus disorder prediction 595 831 - -
Cma11g00467 1254 Coils Coil 1206 1226 - -
Cma11g00467 1254 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Cma11g00467 1254 MobiDBLite consensus disorder prediction 885 906 - -
Cma11g00467 1254 MobiDBLite consensus disorder prediction 595 614 - -
Cma11g00467 1254 SMART PTEN_C2_2 197 337 IPR014020 -
Cma11g00467 1254 MobiDBLite consensus disorder prediction 534 577 - -
Cma11g00467 1254 MobiDBLite consensus disorder prediction 653 667 - -
Cma11g00467 1254 MobiDBLite consensus disorder prediction 792 831 - -
Cma11g00467 1254 Gene3D - 198 341 - -
Cma11g00467 1254 MobiDBLite consensus disorder prediction 763 791 - -
Cma11g00467 1254 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 186 IPR029021 -
Cma11g00467 1254 MobiDBLite consensus disorder prediction 549 577 - -
Cma11g00467 1254 MobiDBLite consensus disorder prediction 396 415 - -
Cma11g00467 1254 MobiDBLite consensus disorder prediction 1223 1254 - -
Cma11g00467 1254 Gene3D Formin, FH2 domain 830 1216 IPR042201 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01653 Cma-Chr2:9362611 Cma11g00467 Cma-Chr11:2260206 1.05E-175 dispersed
Cma11g00467 Cma-Chr11:2260206 Cma13g01093 Cma-Chr13:8230983 6.42E-135 dispersed
Cma01g01662 Cma-Chr1:11366769 Cma11g00467 Cma-Chr11:2260206 1.14E-180 wgd
Cma10g00473 Cma-Chr10:2140987 Cma11g00467 Cma-Chr11:2260206 0 wgd
Cma11g00467 Cma-Chr11:2260206 Cma09g00412 Cma-Chr9:1750408 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00467 - - csv:101221713 1857.03