Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00470 | ATGAAACAGAAGTGGCCAAGTACTATTTCAGAAACCAGGGTGAATGCAATTGCAGAAGGTTCAGATTCAAGCTGCATCACTTGCCCATTCCCTGCAAATGGGTGCAGTAAGCAAGGAAGGAGTTTGACCTCAAAATTCAAGGGTGTTGTGCCTCAACAGAACGGCCACTGGGGTGCTCAAATTTACGCCAATCATCAGCGTATTTGGCTTGGTACATTCAAGTCAGAAAACGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGAAGCGGAGATTGTCATAGAAACTTTCCTTGGACCAAGGTCACAATTGAAGAGCCAAACTTTCAGACACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACACAACCAAATTTGCTGAGTATTTGAGGGACCGTTCTGAAAGTGCACAAACATCAGCCGGCCTCTCTGCAGCAAATATAAATAACAATGAAGGGACTATTAAGCAACTTTTTCAAAAGGAGCTAACACCGAGCGATGTTGGTAAGTTAAACAGATTGGTCATCCCAAAGAAATATGCTGTTAAATACTTTCCTCACGTATCAGCTAGCACGTTAGAAAACTTAGAACGTGCCGATGACGATCGTGATGTGCAGCTGATATTTTTTGACAAAACAATGAGACAGTGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTGTTCACACGTGGTTGGAATCGATTTGTGAAGGAAAAACAACTGAAAGCTAATGACACAATAGCTTTCTACTTGTGTGAAGCAGCAAAGACAAATGATGCTAAAACTACATTCTGTGTAGTAGATGTTAAAAATCGTAATGGTGCCAGCTCGGTCGAGAATGAAGCCAAAGAATTGTTATCGCCTAAGAACAAAGACGGACTAAAAGGCGATGCTGAAGTTGAGGGTTTCAAATTGTTTGGAGTGCATATTAAGTGA | 969 | 41.38 | MKQKWPSTISETRVNAIAEGSDSSCITCPFPANGCSKQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKVTIEEPNFQTLYTTEALLNMLKDGSYTTKFAEYLRDRSESAQTSAGLSAANINNNEGTIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHVSASTLENLERADDDRDVQLIFFDKTMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKTNDAKTTFCVVDVKNRNGASSVENEAKELLSPKNKDGLKGDAEVEGFKLFGVHIK | 322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2279209 | 2280177 | - | CmaCh11G004700.1 | Cma11g00470 | 302979 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00470 | 322 | Pfam | B3 DNA binding domain | 166 | 267 | IPR003340 | GO:0003677 | |
Cma11g00470 | 322 | Gene3D | - | 161 | 292 | IPR015300 | - | |
Cma11g00470 | 322 | SMART | B3_2 | 166 | 281 | IPR003340 | GO:0003677 | |
Cma11g00470 | 322 | ProSiteProfiles | B3 DNA-binding domain profile. | 166 | 281 | IPR003340 | GO:0003677 | |
Cma11g00470 | 322 | SMART | rav1_2 | 45 | 106 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00470 | 322 | Gene3D | AP2/ERF domain | 44 | 101 | IPR036955 | GO:0003700|GO:0006355 | |
Cma11g00470 | 322 | ProSiteProfiles | AP2/ERF domain profile. | 45 | 100 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00470 | 322 | SUPERFAMILY | DNA-binding pseudobarrel domain | 165 | 265 | IPR015300 | - | |
Cma11g00470 | 322 | Pfam | AP2 domain | 44 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00470 | 322 | SUPERFAMILY | DNA-binding domain | 44 | 101 | IPR016177 | GO:0003677 | |
Cma11g00470 | 322 | CDD | AP2 | 44 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
Cma11g00470 | 322 | CDD | B3_DNA | 165 | 277 | IPR003340 | GO:0003677 | |
Cma11g00470 | 322 | PANTHER | DNA-BINDING PROTEIN RAV1 | 1 | 293 | - | - | |
Cma11g00470 | 322 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 1 | 293 | IPR044800 | GO:0003700 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02012 | Cma-Chr4:12585554 | Cma11g00470 | Cma-Chr11:2279209 | 1.99E-56 | dispersed | |
Cma11g00470 | Cma-Chr11:2279209 | Cma11g00827 | Cma-Chr11:4146868 | 7.90E-106 | dispersed | |
Cma10g00479 | Cma-Chr10:2171824 | Cma11g00470 | Cma-Chr11:2279209 | 8.82E-179 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35813 | PF02362 | B3 | 6.70E-25 | CL0405 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00470 | K09287 | - | csv:101212246 | 533.102 |