Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00470 ATGAAACAGAAGTGGCCAAGTACTATTTCAGAAACCAGGGTGAATGCAATTGCAGAAGGTTCAGATTCAAGCTGCATCACTTGCCCATTCCCTGCAAATGGGTGCAGTAAGCAAGGAAGGAGTTTGACCTCAAAATTCAAGGGTGTTGTGCCTCAACAGAACGGCCACTGGGGTGCTCAAATTTACGCCAATCATCAGCGTATTTGGCTTGGTACATTCAAGTCAGAAAACGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGAAGCGGAGATTGTCATAGAAACTTTCCTTGGACCAAGGTCACAATTGAAGAGCCAAACTTTCAGACACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACACAACCAAATTTGCTGAGTATTTGAGGGACCGTTCTGAAAGTGCACAAACATCAGCCGGCCTCTCTGCAGCAAATATAAATAACAATGAAGGGACTATTAAGCAACTTTTTCAAAAGGAGCTAACACCGAGCGATGTTGGTAAGTTAAACAGATTGGTCATCCCAAAGAAATATGCTGTTAAATACTTTCCTCACGTATCAGCTAGCACGTTAGAAAACTTAGAACGTGCCGATGACGATCGTGATGTGCAGCTGATATTTTTTGACAAAACAATGAGACAGTGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTGTTCACACGTGGTTGGAATCGATTTGTGAAGGAAAAACAACTGAAAGCTAATGACACAATAGCTTTCTACTTGTGTGAAGCAGCAAAGACAAATGATGCTAAAACTACATTCTGTGTAGTAGATGTTAAAAATCGTAATGGTGCCAGCTCGGTCGAGAATGAAGCCAAAGAATTGTTATCGCCTAAGAACAAAGACGGACTAAAAGGCGATGCTGAAGTTGAGGGTTTCAAATTGTTTGGAGTGCATATTAAGTGA 969 41.38 MKQKWPSTISETRVNAIAEGSDSSCITCPFPANGCSKQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKVTIEEPNFQTLYTTEALLNMLKDGSYTTKFAEYLRDRSESAQTSAGLSAANINNNEGTIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHVSASTLENLERADDDRDVQLIFFDKTMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKTNDAKTTFCVVDVKNRNGASSVENEAKELLSPKNKDGLKGDAEVEGFKLFGVHIK 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2279209 2280177 - CmaCh11G004700.1 Cma11g00470 302979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00470 322 Pfam B3 DNA binding domain 166 267 IPR003340 GO:0003677
Cma11g00470 322 Gene3D - 161 292 IPR015300 -
Cma11g00470 322 SMART B3_2 166 281 IPR003340 GO:0003677
Cma11g00470 322 ProSiteProfiles B3 DNA-binding domain profile. 166 281 IPR003340 GO:0003677
Cma11g00470 322 SMART rav1_2 45 106 IPR001471 GO:0003700|GO:0006355
Cma11g00470 322 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700|GO:0006355
Cma11g00470 322 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700|GO:0006355
Cma11g00470 322 SUPERFAMILY DNA-binding pseudobarrel domain 165 265 IPR015300 -
Cma11g00470 322 Pfam AP2 domain 44 91 IPR001471 GO:0003700|GO:0006355
Cma11g00470 322 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Cma11g00470 322 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Cma11g00470 322 CDD B3_DNA 165 277 IPR003340 GO:0003677
Cma11g00470 322 PANTHER DNA-BINDING PROTEIN RAV1 1 293 - -
Cma11g00470 322 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 293 IPR044800 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02012 Cma-Chr4:12585554 Cma11g00470 Cma-Chr11:2279209 1.99E-56 dispersed
Cma11g00470 Cma-Chr11:2279209 Cma11g00827 Cma-Chr11:4146868 7.90E-106 dispersed
Cma10g00479 Cma-Chr10:2171824 Cma11g00470 Cma-Chr11:2279209 8.82E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35813 PF02362 B3 6.70E-25 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00470 K09287 - csv:101212246 533.102